BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13266.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359005 jgi|Araly1|359005|fgenesh1_pg.C_scaffold_9000045 854 0.0
> Ahg359005 jgi|Araly1|359005|fgenesh1_pg.C_scaffold_9000045
Length=654
Score = 854 bits (462), Expect = 0.0
Identities = 586/646 (91%), Gaps = 7/646 (1%)
Strand=Plus/Plus
Query 75 CTCGAGAAGAACATCCATTCCAA-GATTCATCTGCATGGTTTCTACGGTACCTTGACCAC 133
|||||||||||||||| || ||| ||| | ||||| |||||| | || ||||||||||||
Sbjct 14 CTCGAGAAGAACATCC-TTACAATGATCCGTCTGCTTGGTTTGTCCGTTACCTTGACCAC 72
Query 134 CAAGGCGACTGGCTTGAAAAAACTAGGGGAAACCTGGTCGTTGCTGCAACAGTCATAGCT 193
||||| || |||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct 73 CAAGGTGATTGGCTTGAAAAAACCAGAGGAAACCTTGTCGTTGCAGCAACCGTCATAGCT 132
Query 194 GCAATGAGCTTTGGGGTAATGGTGAACCCTCCAGGCGGTGTTTGGCAGAGTGAAGATTGT 253
|||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||
Sbjct 133 GCAATGAGCTTTGGGGTAATGGTGAACCCTCCAGGCGGCGTGCGGCAAAGTGAAGACTGT 192
Query 254 TCCTCCAAAGGCCAAACTACTTTTCAAACCAGAACTTGTGAGGGGAAGCTTGGGACTTCG 313
||| ||||||| ||||| | |||||||||||||||||||||||||| |||| ||||||
Sbjct 193 TCCCCCAAAGGTCAAAC--C-GTTCAAACCAGAACTTGTGAGGGGAAGGTTGGAACTTCG 249
Query 314 ATACTAGAGCACAATCCTTCAAAGCGTATCTTCTATCTTGGCATGGTCATTAGCAATTTG 373
|||||||||||| ||||| |||||||| ||||||||||||| ||||| || |||||||||
Sbjct 250 ATACTAGAGCACCATCCTACAAAGCGTTTCTTCTATCTTGGTATGGTAATAAGCAATTTG 309
Query 374 GTATCGTTTTCCGCCTCAATGGGTATCATTTTCCTCGTCATCATTGGCTTCCGATTCAGG 433
|| ||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 310 GTGTCGTTTTCCGCATCAATGGGTATCATTCTCCTCGTCATCACTGGCTTCCGATTCAGG 369
Query 434 AACCGGTTAATAATGACGATCATGGTCATGTTTATGGTGGTGGCGGTTCTATGTATATCG 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AACCGGTTAATAATGACGATCATGGTCATGTTTATGGTGGTGGCGGTTCTATGTATATCA 429
Query 494 GCAGCCTTCTTCTTTGCTGCGGGGTTGGTTCAACACGAGGATGATTTCATCGAGAAGATT 553
|||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||| ||
Sbjct 430 GCAGCCTTCTTCTTTGCTGCGGCGTTGGTTCAACACGATGATGACTTCATCCAGAATATA 489
Query 554 CTTCAAATTTATTTGGGATTTTGGGTTTTGCTTCCTGTTTTAGTAATCCTGATCCAATTA 613
||||| |||||| |||||||||||||| |||||||||||||| || |||| |||||| ||
Sbjct 490 CTTCAGATTTATGTGGGATTTTGGGTTGTGCTTCCTGTTTTAATACTCCTTATCCAACTA 549
Query 614 GTGCGGTTTTTATGGTGGGTTATTAGGTTCATATGTTGTGGTT-GTGGACGTCGACCACG 672
||||||||||||||||||| ||||||||| ||||||||||||| | |||| ||||| |||
Sbjct 550 GTGCGGTTTTTATGGTGGGCTATTAGGTTAATATGTTGTGGTTCG-GGACTTCGACGACG 608
Query 673 GTCTACTCCACGGTTGCTGCCTTTGGCTCTGCCACCTGTCCGTTGA 718
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 609 GTCTACTCCACGGTTGCTGCCTTTGGCTCTGCCACCTGTCCCTTGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5