BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13270.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497058 jgi|Araly1|497058|fgenesh2_kg.9__23__AT4G13270.1 1077 0.0
> Ahg497058 jgi|Araly1|497058|fgenesh2_kg.9__23__AT4G13270.1
Length=913
Score = 1077 bits (583), Expect = 0.0
Identities = 689/738 (93%), Gaps = 15/738 (2%)
Strand=Plus/Plus
Query 1 CTAATTCTCACGAAAAAGCCCCATAACTTCCAAAATCAACTTTTCACCCCCAAAAAACTC 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1 CTAATTCTCACGAAAAAACCCCAAAACTTCCAAAATCAACTTTTCACCCCC-AAGAACTC 59
Query 61 ATCTTCTTCGTTGAAACGATCGAAATCGATAATGGCGTCGTCGAAGCACGAAGACTATGG 120
|||||||||| | | |||| ||||||||||||||||||||||||||||||| ||
Sbjct 60 ATCTTCTTCG-T-------T-GAAA-CGATAATGGCGTCGTCGAAGCACGAAGACTACGG 109
Query 121 CATCCCTTACACACCTCTTCCATCATCACAACCATCTCAATCCGTAATCCTTCTAACTCC 180
| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 110 CGTTCCTTACACACCTCTTCCTTCATCACAACCATCTCAAACCGTAATCCTTCTAACTCC 169
Query 181 TTATCGCCGTCACCGTCGTCCTTCACTTCTCCGTAACCTCCGTTGTTCTCTCCTCTTCAC 240
|||||||||| ||||| ||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 170 TTATCGCCGTAACCGTTATCCCTCAATCCTCCGTAACCTCCGTTGTTCTCTCCTCTTCAC 229
Query 241 CGCCGTAATCCTCCTCCTCTCCGCCGCCGTTTACTTACTCTACCCTTCAGATCCAGACAT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CGCCGCAATCCTCCTCCTCTCCGCCGCCGTTTACTTACTCTACCCTTCAGATCCAGACAT 289
Query 301 CACTGTCTCACGAATCAATCTCAACCACATAAGCGTCGTTGATTCTCATAAAATCGCTTT 360
||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 290 CACCGTCTCACGAATCAATCTCAACCACATAAGCGTCGTAGATTCACACAAAATCGCTTT 349
Query 361 AGATCTCTCGTTTTCGCTCACAATCAAAGTTCGAAACCGAGATTTCTTCTCACTTGATTA 420
||||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||
Sbjct 350 AGATCTCTCGTTTTCACTCACAATCAAAGTTCGAAACCGCGACTTCTTCTCTCTAGATTA 409
Query 421 CGATTCGCTTGTTGTTTCGATTGGGTATAGAGGAAGAGAGTTAGGTCTTGTTAAGTCTAA 480
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 410 CGATTCGCTTGTTGTTTCGATTGGGTATAGAGGAAGAGAGTTAGGGCTTGTGAAGTCTAA 469
Query 481 AGGTGGACATCTTAAAG-CTCGTGATAGCTCTTATATTGATGCTACGCTTGAGCTTGATG 539
|||||||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct 470 AGGTGGACATCT-AAAGGCTCGTGCTAGCTCTTATATTAATGCTACGCTTGAGCTTGATG 528
Query 540 GTCTTGAGGTTGTTCATGATGTTATTTATTTGATTGGTGATTTGGCTAAAGGTGTTATTC 599
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 529 GTCTTGAGGTTGTTCATGATGTGATTTATCTGATTGGTGATTTGGCTAAAGGTGTTATTC 588
Query 600 CTTTTGATACTATTGCTCAAGTTCAAGGTGATCTTGGTGTTCTCTTGTTC-AATATCCCA 658
||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 589 CTTTTGATACTATTGCTCAAGTTAAAGGTGATCTTGGTGTTCTCTTGTTCCAA-ATCCCT 647
Query 659 ATTCAGGGTAAAGTGTCGTGTGAGGTGTATGTTAATGTTAACAACCAGAAAATTTCACAC 718
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 648 ATTCAGGGTAAAGTGTCGTGTGAGGTATATGTTAATGTTAACAACCAGAAAATTTCACAC 707
Query 719 CAAGATTGTCATCGTAAG 736
|||||||||| |||||||
Sbjct 708 CAAGATTGTCGTCGTAAG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5