BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13280.1
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332992 jgi|Araly1|332992|fgenesh1_pm.C_scaffold_9000020 1188 0.0
> Ahg332992 jgi|Araly1|332992|fgenesh1_pm.C_scaffold_9000020
Length=1527
Score = 1188 bits (643), Expect = 0.0
Identities = 802/876 (92%), Gaps = 21/876 (2%)
Strand=Plus/Plus
Query 1 ATGGAATCCCAAACAACGTTTAAGTATGAAAGTCTTGCGTTCACAAAGTTGTCTCACTGT 60
|||||||||||||||||||| || | |||||||| ||||||||||||||||||||||| |
Sbjct 1 ATGGAATCCCAAACAACGTTCAAATGTGAAAGTCATGCGTTCACAAAGTTGTCTCACTCT 60
Query 61 CAATGGACTGATTACTTCCTCTCTGTTCCCATCGATGAATCGGAACTAGATGTTATTACA 120
||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 61 CAATGGACTGATTACTTCCTCTCTGTTCCTATCGATGAATTGGAACTAGGTGTTATTACA 120
Query 121 AGAGAGATTGACATACTCAAGCCGGAAGTTATGGAGCTCCTATCTTCCCAGGGTGACGAT 180
||||||||||| ||||||||||| ||||||| |||||| ||||||||||| ||||| |||
Sbjct 121 AGAGAGATTGAAATACTCAAGCCTGAAGTTAGGGAGCTTCTATCTTCCCACGGTGATGAT 180
Query 181 GAGACATCGAAGAGGAAAGTGCTTTTGATTCAATTGCTTCTTAGTCTTGGTCTCGCATTT 240
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 181 GAGACATCGAAGAGGAAAGTGCTTTTGATCCAATTACTTCTAAGTCTTGGTCTCGCATTT 240
Query 241 CATTTTGAAAATGAGATCAAAAATATACTAGAACATGCTTTTCGAAAGATAGATGATATA 300
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 241 CATTTTGAAAATGAGATCAATGATATACTAGAACATGCTTTTCGAAAGTTAGATGATATA 300
Query 301 ACTGGTGATGAAAAGGACTTGTCTACAATCTCCATCATGTTCCGTGTCTTTAGAACATAC 360
| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 301 ATTGGTGATGAAAAGGACTTGTCTACAATCTCCATCATGTTCCGCGTTTTTAGAACATAC 360
Query 361 GGACACAATTTACCATCAAGTGTATTCAAGAGATTTACAGGGGATGATGGGAAGTTTCAG 420
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GGACACAATTTATCATCAAATGTATTCAAGAGATTTACAGGGGATGATGGGAAGTTTGAG 420
Query 421 CAATCTCTTACGGAAGATGCTAAAGGAATACTTAGCTTGTATGAAGCGGCACACTTGGGA 480
||||||||||| |||||||||||||| ||||||||||| || | |||||||||
Sbjct 421 CAATCTCTTACAGAAGATGCTAAAGGTATACTTAGCTTC-------CG-CTCACTTGGGA 472
Query 481 ACAACGACAGATTATATATTGGACGAAGCGTTGAAGTTTACATCGAGCCACTTGAAGTCT 540
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 473 ACAACGACAGATTATGTATTGGACGAAGCGTTGAAGTTCACATCGAGCCACTTGAAGTCT 532
Query 541 TTATTGGCAGGAGGGACGTGCCGGCCTCATATCTTAAGGCTTATAAGAAACACACTTTAT 600
||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 533 TTATTGGCAGGCGGGACGTGCCAGCCTCATATCTTAAGGCTTATAAGAAACACGCTTTAT 592
Query 601 TTACCTCAACGTTGGAATATGGAAGCAGTAATTGCAAGGGAATACATTTCGTTCTATGAA 660
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 593 TTACCTCAACGTTGGAACATGGAAGCAGTAATTGCAAGGGAATACATTACGTTCTACGAA 652
Query 661 CAAGAAGAAGATCACGATAAGATGCTACTCAGATTAGCCAAGCTCAATTTCAAGTTATTG 720
|| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 653 CACGAAGAAGATCACGACAAGACGCTACTCAGATTAGCCAAGCTAAATTTCAAGTTATTG 712
Query 721 CAGCTGCATTACATTAAAGAACTGAAATCTTTTATCAAATGGTGGATGGAGCTAGGCCTT 780
|||||||||||||| |||||||| ||| |||||||||| | | | | | | ||
Sbjct 713 CAGCTGCATTACATCAAAGAACTCAAAACTTTTATCAACT-----A-G-A-C----C-TT 759
Query 781 ACATCTAAGTGGCCTAGTCAATTTAGAGAGAGGATCGTGGAGGCTTGGCTAGCTGGATTG 840
|||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 760 ACATCTAAGTGGCCAAGTCAATTTAGAGAGCGGATCGTAGAGGCTTGGCTAGCAGGATTG 819
Query 841 ATGATGTATTTCGAACCACAATTTTCGGGTGGAAGG 876
|||||||||| ||||||||||||||| ||||| |||
Sbjct 820 ATGATGTATTACGAACCACAATTTTCAGGTGGGAGG 855
Score = 385 bits (208), Expect = 7e-106
Identities = 267/296 (90%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 1281 CGACATGAGTAATGGGTTTGCTGCAAATGCGATCAACTATTATATGAAGCAATTTGTAGT 1340
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 CGACATGAGTAACGGGTTTGCTGCAAATGCGATCAACTATTATATGAAGCAATTTGTAGT 1292
Query 1341 TACCAAGGAAGAGGCTATTCTCGAGTGTCAAAGAATGATCGTGGACATCAATAAGACCAT 1400
|||||| |||| ||||||||| |||||||||| |||||||| | |||||||||| |||
Sbjct 1293 TACCAAAGAAGGGGCTATTCTAGAGTGTCAAAAAATGATCGCAAATATCAATAAGATCAT 1352
Query 1401 AAATGAGGAGCTACTGAAGACAACCAGC-GTACCAGGTCGAGTACTCAAGCAAGCACTTA 1459
|||||| |||||||| |||||||| || || || ||| || |||||||||||||| |
Sbjct 1353 AAATGAAGAGCTACTTAAGACAACT-GCCGTGTCACCTCGTGTTCTCAAGCAAGCACTCA 1411
Query 1460 ATTTTGGACGCTTATTGGAACTCCTCTACACCAAGTCCGATGATATATACAATTGTAGTG 1519
||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 1412 ATTTTAGACGCTTATTGGAAGTCCTTTACACCAAGTCCGATGATATATTCAATTGTAGTG 1471
Query 1520 AAGGAAAACTGAAGGAGTATATAGTAACTCTGCTCATAGATCCCATACGTCTTTGA 1575
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1472 AAGGAAAACTCAAGGAATATATAGTAACTCTGCTCATAGATCCAATACGTCTTTGA 1527
Score = 372 bits (201), Expect = 5e-102
Identities = 239/257 (93%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 916 GATGACGCGTGCGATCATTATTTCTCTATTCATGAGCTTACAAGACTCGTAGCTTGTGTG 975
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 855 GATGACGCGTGCGATCATTATTTCTCTA--GATGAGCTTACAAGACTCGTAGATTGTGTG 912
Query 976 GAAAGATGGAGTCCTGATGGCATTGACACACTTGAAGATATATCGCGAAGTGTCTTTAAA 1035
|||||||||| || ||||||| |||||||||| | |||||||||||||| |||||| |||
Sbjct 913 GAAAGATGGATTCTTGATGGCGTTGACACACTAGGAGATATATCGCGAACTGTCTTCAAA 972
Query 1036 CTTATGTTGGATGTTTTCGACGATATCGGAAA-AGGAGTGAGGTCTGAAGGAAGCTCCTA 1094
||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
Sbjct 973 CTTATGTTGGATGTTTTCGACGAGATC-GAAAGAGGAGTGAGGTCTAAAGGAAGCTCTTT 1031
Query 1095 CCACTTGAAGGAGATGTTAGAAGAGCTCAATACACTCGTGAGAGCAAATCTTGATCTTGT 1154
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1032 CCACTTGAAGGAGATGTTAGAAGAGCTCAAGACACTCGTGAGAGCAAATCTTGATCTTGT 1091
Query 1155 CAAATGGGCACGAGGAA 1171
|||||||||||||||||
Sbjct 1092 CAAATGGGCACGAGGAA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792031020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5