BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13290.1
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915064 jgi|Araly1|915064|Al_scaffold_0009_33 2106 0.0
Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881 267 3e-70
> Ahg915064 jgi|Araly1|915064|Al_scaffold_0009_33
Length=1473
Score = 2106 bits (1140), Expect = 0.0
Identities = 1369/1480 (93%), Gaps = 14/1480 (1%)
Strand=Plus/Plus
Query 399 ATGGAAATAAT-AT-T-AGTCACTTTGTGCTTAACAACGCTCCTTGCACTTCTTCTCCTT 455
||||||||||| || | | ||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1 ATGGAAATAATAATATCAATCACTTTATGCTTAACAACCCTCCTTGCACTTCTACTCCTA 60
Query 456 AAATCCATCCTCAAAAGAACCACCACGAA-CAATCTTAACCTACCACCATCTCCATGGCG 514
||||||||||| |||||||||||||| || ||| || ||||||||||| || ||| ||||
Sbjct 61 AAATCCATCCTTAAAAGAACCACCAC-AACCAAACTCAACCTACCACCGTCACCAAGGCG 119
Query 515 ACTTCCCGTGATCGGAAACCTCCACCAGCTCAGCCTCAATACTCACCGTTCTCTCCGTTC 574
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 120 ACTTCCGGTGATCGGAAACCTCCACCAGCTCAGCCTCAATACTCACCGCTCTCTCCGCTC 179
Query 575 CCTAAGTCTCCGATATGGACCACTCATGCTCCTTCATTTCGGCCGCACACCAGTCCTTAT 634
||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CCTGAGTCTCCAATATGGACCACTCATGCTTCTTCATTTCGGCCGCACACCAGTCCTTAT 239
Query 635 AGTCTCCTCAGCCGACGTTGCTCATGACATCTTGAAGACGTACGATGTTATTTGTGCCAA 694
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTCTCCTCCGCCGACGTTGCTCATGACATCTTGAAGACGTACGATGTTATTTGTGCCAA 299
Query 695 CCGCCCAAAAACAAAAGTGATTGATAAAATTTTGAGAGGTGGCAGAGATGTGGCTTTTGC 754
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 CCGCCCAAAAACAAAAGTGATTGATAAAATTTTGAAAGGTGGCAGAGATGTGGCTTTTGC 359
Query 755 CCCTTACGGAGAATATTGGAAACAAATGAAGAGTATTTGCATTCAGAATCTACTCAGCAA 814
|||||| || |||||||||| ||| || ||||||||| |||| |||||||||||||||||
Sbjct 360 CCCTTATGGGGAATATTGGAGACAGATAAAGAGTATTAGCATCCAGAATCTACTCAGCAA 419
Query 815 CAAAATGGTCCGGTCTTACAAGAAGATAAGAGAAGACGAGATAAAACTAATGATAGAAAA 874
|||||||||| ||||||| |||| ||||||||||| ||||||||||||||||| | |||
Sbjct 420 CAAAATGGTCAGGTCTTATGAGAAAATAAGAGAAGAGGAGATAAAACTAATGATTG-AAA 478
Query 875 AG-TGGAAAATGCGAGTTCTTGTTCTCCTCCCTCACCAGTAAATCTAAGCCAAC-TCTTT 932
|| ||||||| ||||||| || ||||||||||||||| |||||||||||||||| || |
Sbjct 479 AGATGGAAAAAGCGAGTTGTTCTTCTCCTCCCTCACCGGTAAATCTAAGCCAACTTC-TA 537
Query 933 ATGACTTTGACAAACGATATAATATGTAGAGCTGCCTTGGGAAGAAAATATAGCAGCAAG 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGACTTTGACAAACGATATAATATGTAGAGCTGCCTTGGGAAGAAAATATAGCAGCAAG 597
Query 993 GAAGATGGAATTGATGTTGAGAACATAGTTAGGGCATTTTCCGCACTCGTGGGTGAATTT 1052
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 598 GAAGATGGGGTTGATGTTGAGAACATAG-T--GGCATTTTCCGCACTCGTGGGTGAATTT 654
Query 1053 CCTATCGGCGAATACATTCCTAGTTTGTCGTGGATCGATAAAATCCGCGGTCAGGATCAT 1112
||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 655 CCTATAGGGGAATACATTCCTAGTTTGTCGTGGATTGATAAAATCCGCGGTGAGGATCAT 714
Query 1113 AAAATGGAGGAAGTAGATAAAAGATTTGATGAGTTTTTGGAA-AGAGTCGTAAAAGAACA 1171
||||||||||||||||||||| |||||||||||||||| || ||||| |||||||||||
Sbjct 715 AAAATGGAGGAAGTAGATAAACGATTTGATGAGTTTTT-AAATAGAGTTGTAAAAGAACA 773
Query 1172 TGAAGATGCCAATAAAGACACCAGATCGGACTTGGTTGATACGTTACTAACGATCCAAAG 1231
||||||||| |||||||| |||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 774 TGAAGATGCAAATAAAGAGACCAAATCAGACTTGGTTGATAAGTTACTAACGATCCAAAG 833
Query 1232 TGATAAGAGTGCCTTAAAACTTATAATATGGGATATGTTTTTAGCGGGAACGGCAACAAG 1291
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 834 CGATAAGAGTGCCTTAAAACTTATCATATGGGATATGTTTTTAGCGGGAACGGCAACAAC 893
Query 1292 TCTCTCGTTTCTTGAATGGGCAATGACAGAGCTTATGAGAAATCCTAAGGTCATGAAGAA 1351
|||||| ||||||| ||||||||||||||| || |||||| |||| |||| |||||||||
Sbjct 894 TCTCTCATTTCTTGCATGGGCAATGACAGAACTCATGAGACATCCAAAGGCCATGAAGAA 953
Query 1352 ACTCCAAGAAGAGATTCGTTCGAGTTCACGACAAGGTTTATTTGTAACGGAGAAAGAAGC 1411
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 954 ACTCCAAGAAGAGATTCGTTCAAGTTCACCACAAGATTTATTTGTAACGGAGAAAGAAGC 1013
Query 1412 TGAGAAGATGGATTATTTGCAAGCAGTTATTAAGGAGGCTTTACGGTTGCGTCCTCCTGC 1471
|||||||||| ||||| | ||||| ||||||||||| || ||| |||||||||| || ||
Sbjct 1014 TGAGAAGATGAATTATCTACAAGCTGTTATTAAGGAAGCGTTAAGGTTGCGTCCACCAGC 1073
Query 1472 TCCACTAATGGTTCCACGAGTATTTAGTGAAGATGTCACGTTAAAGGGATACAATATTCC 1531
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1074 TCCACTATTGGTTCCACGAGTACTTAGTGAAGATGTCACGTTAAAGGGATACAATATTCC 1133
Query 1532 TGCAGGAACACAGGTTATAATCAATGCTTGGGCAATCCAACGAGATACTACAACATGGGG 1591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AGCAGGAACACAGGTTATAATCAATGCTTGGGCAATCCAACGAGATACTACAACATGGGG 1193
Query 1592 GATAGATGCAGAAGAGTTTAGGCCAGAAAGGCATTTAGACTCTATTTTGGATTTTCAGGG 1651
|||||||||||||||||||||||||||||||||||||||||| | |||||||| || ||
Sbjct 1194 GATAGATGCAGAAGAGTTTAGGCCAGAAAGGCATTTAGACTCAAACTTGGATTTCCAAGG 1253
Query 1652 ACAAGATTTCAAATTTATTCCATTCGGATCGGGAAAAAGGATATGTCCTGGGATAGGATT 1711
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1254 ACAAGATTTCAAATTCATTCCATTCGGCTCGGGCAAAAGGATATGTCCTGGAATAGGATT 1313
Query 1712 CACATCGGCATTGATCGGGGTGACATTGGCCAATATCGTGAAACGGTTCAACTGGAGAAT 1771
|||||| || ||||||||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 1314 CACATCCGCGTTGATCGGGGTTACATTGGCCAATATCTTGAAACGGTTTAACTGGAGAAT 1373
Query 1772 GGATGTGGAACCACAAAGGGTTCAACATGACCTAACCGAAGCAACCGGTCTCGTGGTTTT 1831
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1374 GGATGTAGAACCACAAAGAGTTCAACATGACCTAACTGAAGCAACCGGTCTCGTGATTTT 1433
Query 1832 CCGCAAATTCCCTCTTATTGCTATTCCATCTTCTGCTTGA 1871
||||||||| ||||||||||||| ||||||| ||||||||
Sbjct 1434 CCGCAAATTTCCTCTTATTGCTACTCCATCTCCTGCTTGA 1473
> Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881
Length=1512
Score = 267 bits (144), Expect = 3e-70
Identities = 472/627 (75%), Gaps = 35/627 (6%)
Strand=Plus/Plus
Query 1257 ATATGGGATATGTTTTTA-GCGGGAACGGCAACAAG-TC-TCTCGTTTCTTGAATGGGCA 1313
|||| |||||||||| || | ||| ||| ||||||| || ||| | || |||||| |
Sbjct 892 ATATTGGATATGTTTATAGGAGGG-ACGTCAACAAGTTCAACTC--TACTAGAATGGATA 948
Query 1314 ATGACAGAGCTTATGAGAAATCCTAAGGTCATGAAGAAACTCCAAGAAGAGATTCGTTCG 1373
||||| ||||| || |||||||| || || ||||||||||||||||| |||||||| ||
Sbjct 949 ATGACGGAGCTGATCAGAAATCCAAATGTTATGAAGAAACTCCAAGACGAGATTCGGTCA 1008
Query 1374 A--GTTCA--CGACAAGGTTTATTTGTAACGGAGAAAGAAGCTGAGAAGATGGATTATTT 1429
| || | | ||| |||| || ||| || ||||||| | | || ||| | || ||
Sbjct 1009 ACCATT-AGGCCACATGGTTCATACATAAAAGAAAAAGAAGTTAATAATATGAAATACTT 1067
Query 1430 GCAAGCAGTTATTAAGGAGGCT-TTACGGTTGCGTCCTCCTGC-TCCACTAATGGTTCC- 1486
| |||| || ||||| |||| | || ||||||| ||||||| | ||||||||| ||||
Sbjct 1068 GAAAGCCGTGATTAAAGAGG-TGTTTCGGTTGCATCCTCCT-CTTCCACTAATACTTCCT 1125
Query 1487 ACGAGTATTTAGTGAAGATGTC-ACGTTAAAGGGATACAATATTCCTGCAGGAACACAGG 1545
| || |||| |||||||||||| | | |||||||||| || || | ||||| ||| |||
Sbjct 1126 A-GACTATTAAGTGAAGATGTCAAAG-TAAAGGGATATAACATAGCGGCAGGGACAGAGG 1183
Query 1546 TTATAATCAATGCTTGGGCAATCCAACGAGATACTACAACATGGGGGATAG-ATGCAGAA 1604
|||||||||||||||||||||||||| |||| | | | |||||| | | |||| |||
Sbjct 1184 TTATAATCAATGCTTGGGCAATCCAAAGAGACCCCGCGATATGGGG-ACCGGATGCCGAA 1242
Query 1605 GAGTTTAGGCCAGAAAGGCATTTAGACTCTATTTTGGATTTTCAGGGACAAG-ATTTCAA 1663
|| || | ||||| || || ||||| || | |||||||| ||| ||| ||| |||| ||
Sbjct 1243 GAATTCAAACCAGAGAGACACTTAGATTCAACTTTGGATTATCATGGA-AAGGATTTGAA 1301
Query 1664 ATTTATTCCATTCGGATCGGGAAAAAGGATATGTCCTGGGATAGGAT-TCACATCGGCAT 1722
|| || ||||||||||| || | |||||| |||||||||||| || | | | || |
Sbjct 1302 CTTCATCCCATTCGGATCAGGTAGAAGGATTTGTCCTGGGATAA-ATCTGGCTTTGGGTT 1360
Query 1723 TGATCGGGGTGACATTGGCCAATATCGTGAAACGG-TTCAACTGGAGAATGGATG-TGGA 1780
|| | | ||| ||| ||||||| | || | | | || ||||||| | || | ||||
Sbjct 1361 TGGTAGAGGTTACAGTGGCCAACCTTGT-AGGCCGATTTGACTGGAGGGTCGAGGCTGGA 1419
Query 1781 ACCACAAAG-GGTTCAACATGACCTAACCGAAGCAACCGGTCTCG-TGGTTTTCCGCAAA 1838
||| || | || ||||| ||| || | ||||| | ||||||| || ||| ||||||
Sbjct 1420 -CCA-AATGCGGATCAACCTGATCTGGCTGAAGCCGCTGGTCTCGATG-TTTGCCGCAAG 1476
Query 1839 TTCCCTCTTATTGCTATT-CCATCTTC 1864
|||||||| ||||| ||| ||||||||
Sbjct 1477 TTCCCTCTCATTGC-ATTTCCATCTTC 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77399377840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5