BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13330.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332990 jgi|Araly1|332990|fgenesh1_pm.C_scaffold_9000018 1923 0.0
> Ahg332990 jgi|Araly1|332990|fgenesh1_pm.C_scaffold_9000018
Length=1287
Score = 1923 bits (1041), Expect = 0.0
Identities = 1210/1292 (94%), Gaps = 10/1292 (1%)
Strand=Plus/Plus
Query 119 ATGAACTCAATTCAACGTTTCTCGTTGACAACACAG-CGTGG-AAAAAGACTAAGCGTCG 176
||||| | |||||||||||||||||||||||||| | | ||| |||||| ||||||||||
Sbjct 1 ATGAATTTAATTCAACGTTTCTCGTTGACAACAC-GCCATGGAAAAAAG-CTAAGCGTCG 58
Query 177 TCAAGTCATGTGTACGACATTTCTGCGGAAGAGACGTCGTAATAAAAGACGAAGGAGACT 236
|| ||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 59 TCGAGTCATGTGTACGCCATTTCTGCGGAAGAGACGGCGTAATAAAGGAAGAAGGAGACT 118
Query 237 GGTTTTACTCGCCGGAATGGTGGGATCCTCAAGACGGTGGTTACACAGTCTCACGAGCTG 296
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 119 GGTTTTACTCGCCGGAATGGTGGGATCCTCACGACGGTGGTTACACAGTCTCACGAGCT- 177
Query 297 TC-TCCAATAAAGGAAACGGCGTCGTTTCTGTCGTCGCCCACCCTTCTTCTCTCCCTAGT 355
| ||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 178 ACTTCCGCTAAAGGAAACGGCGTCGTTTCAGTTGTCGCTCACCCTTCTTCTCTCCCTAGT 237
Query 356 AGAGATTCATGGGGAGAAACTGAGAAATGGTTAGAGAAAAGGTATATGGAGATTAT-TCC 414
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | |
Sbjct 238 AGAGATTCATGGGGAGAAACTGAGAGATGGTTAGAGAAAAGGTATATGGAGATAATGT-C 296
Query 415 AAGAGATACAGAGGAGAAGAATGGGAGGTTTAATGTACTTGGATATCAATGGCGATCGCT 474
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAGAGATGGAGAGGAGAAGAATGGGAGGTTTAATGTACTTGGATATCAATGGCGATCGCT 356
Query 475 TCGGTTTAACGATGATACTAGACAAAGCACTGTGAAAGTTATGGCTGCTTGTAGAACATT 534
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 357 TCGGTTTAACGATGATACTCGACAAAGTACTGTGAAAGTTATGGCTGCTTGTAGAGCATT 416
Query 535 GCAACCAAGTTCTGTTTTTTATATGCAACAGCCTCATTGTCTTGCTGTTCCATATCTGAA 594
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCAACCGAGTTCTGTTTTTTATATGCAACAGCCTCATTGTCTTGCTGTTCCATATCTGAA 476
Query 595 GAGTATGGTTTCAGTTGGATTGACTTCTCTTGCAGCTTCTAAATTTGATATGAGGAGTGT 654
||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 477 GAGCATGGTTTCAGTTGGATTGACTTCCCTTGTAGCTTCCAAATTTGATATGAGGAGTGT 536
Query 655 AGCTATTGGGGACAAACAAATGCGTGTGTTATGTATCGGTCACGGTGGAGGAAGTTTACC 714
||||||||||| ||| |||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 537 TGCTATTGGGGAGAAAGAAATGCGTATATTATGCATCGGTCACGGTGGAGGAAGTTTACC 596
Query 715 GTTGTTTATAGCTAAACACATTCTTGGTGCTGTTGTTGACATAGTTGAGCTAGACCCACT 774
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 GTTGTTTTTAGCTAAACACATTCTTGGTGCTGTTGTTGACATAGTTGAGCTCGACCCACT 656
Query 775 TGTTATCTCAGAGTCGGTTCGAGCAATGGGCTTTCCTGCATTCTCTGTGATGACAGCAAC 834
||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||
Sbjct 657 TGTTATCTCAGAGTCGGTTCGAGCAATGGGCTTCCCTGCATCCTCTGTCATGACTGCAAC 716
Query 835 TGGGAAACGTGTGTTACCAACTCCTGAAATTATTGACCAAGTGATGTGGGGAGGGATCCA 894
|||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 717 CGGGAAACGTGCGTTACCAACTCCTGAAATTATTGACCAAGTGATGTGGCGAGGCATCCA 776
Query 895 TGAGAGACTC-TCCTTATACGAATCAAAAGCTGAGGATTTCATTCTCAGGAACCAAAGTA 953
|||||||||| ||| | |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 777 TGAGAGACTCTTCC-TCTACGAATCAAAAGCAGAGGAATTCATTCTCAGGAACCAAAGTA 835
Query 954 ATACTTATGACTTGATCTTCATGGATGCTTATGATGGAGCAGACATCTTTCCCCATAGTC 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 ATACTTATGACTTGATCTTCATGGATGCTTATGATGGAGCAGACATCTTTCCTCATAGTC 895
Query 1014 TGTGGGATTCCAGTTCTGTGTTTATGAAAGCTCTGAGCAAAACACTTCACCATGAGCATG 1073
|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 896 TGTGGGATTCCAATTCTGTGTTCATGAAAGCTCTGAGCAAAATACTTCACCATGAGCATG 955
Query 1074 GAACTCTGGTGGTGAACCTTCACTCTGATGCAGACATCTCTGATATAGACAGATCAAATG 1133
||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 956 GAACTATGGTGGTGAACCTTCACTCTGATGCAGACATTTCTGACATAGACAGAACAAATG 1015
Query 1134 AAGGTGTAACAACGGGGAAGTATGTACGGAAAGTTGGTAAAGCCTATAAAAAGGGTTTAT 1193
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 1016 AAGGTGTAACAACCGGGAAGTATGTACGGAAAGTCGGTCGAGCCTATAAAAAGGGTGTAA 1075
Query 1194 TAGAGAATGAGAGGAATGGTCTGGTGTTTGCTTGTGAAGTGCCATGGCTATGTAATGTAT 1253
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TGGAGAATGAGAGAAATGGGCTGGTGTTTGCTTGTGAAGTGCCATGGCTATGTAATGTAT 1135
Query 1254 CGCTGGTGGTGAGCAGAGGGATGGGGTCAGAGGGAAGAGATAGAGAGAAAACCAAGAGTA 1313
| || ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1136 CACTAGTGGTGAGCAGGGGGATGGGGTCAGAGGGAAGACATAGAGAGAAAACCATGAGTA 1195
Query 1314 ATCTAATGAAGACTTCACTAGAAGTGGACCGAGTCCTGCGTCTGCCTTTCTCTTGCTTGG 1373
|||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1196 ATCTCATGAAGACTTCACTAGAAGTTGACCGAATCCTGCGTCTGCCTTTCTCTTGCTTGG 1255
Query 1374 ATTATCTGAAAACTGGTCTTGCCATCATATAA 1405
||||||||||||||||||||||||||||||||
Sbjct 1256 ATTATCTGAAAACTGGTCTTGCCATCATATAA 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5