BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13340.1
Length=2448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497051 jgi|Araly1|497051|fgenesh2_kg.9__16__AT4G13340.1 1958 0.0
Ahg905564 jgi|Araly1|905564|Al_scaffold_0003_2692 1203 0.0
Ahg492992 jgi|Araly1|492992|fgenesh2_kg.7__2425__AT4G18670.1 939 0.0
> Ahg497051 jgi|Araly1|497051|fgenesh2_kg.9__16__AT4G13340.1
Length=1812
Score = 1958 bits (1060), Expect = 0.0
Identities = 1151/1194 (96%), Gaps = 10/1194 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAGACGAttcaaatcctcctcttcttcttcttcctcatcaatctcaccaacgct 60
|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 1 ATGAAGAAGACGATCCAAATCCTCTTCTTCTTCTTCCTCTTCATCAATCTCACCAA--CT 58
Query 61 ctctcaatctcctctGACGGCGGCGTTCTCTCCGATAACGAAGTCCGTCACATTCAACGC 120
|| | ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 59 CT-T---TCT-CTC--ACGGCGGTGTTCTCTCCGATAACGAAGTCCGTCACATTCAACGC 111
Query 121 CGTCAATTACTCGAATTCGCCGAACGAAGCGTCAAAATCACCGTTGATCCTTCTCTAAAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 112 CGTCAATTACTCGAATTCGCCGAACGAAGCGTCAAAATCACCGTTGATCCTTCTCTAATC 171
Query 181 TTCGAGAATCCGAGATTGCGAAATGCTTATATAGCTCTACAAGCTTGGAAACAAGCGATT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTCGAGAATCCGAGATTACGAAATGCTTATATAGCTCTACAAGCTTGGAAACAAGCGATT 231
Query 241 CTCTCTGATCCAAACAATTTCACTTCGAATTGGATCGGATCCAATGTCTGTAACTACACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CTCTCTGATCCAAACAATTTCACTTCGAATTGGATCGGATCCAATGTCTGTAACTACACC 291
Query 301 GGAGTTTTCTGTTCTCCGGCGCTTGATAATCGGAAGATTCGTACCGTCGCCGGAATCGAT 360
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 292 GGAGTTTTCTGTTCTCCGGCCCTTGATAATCGGAAGATCCGTACCGTCGCCGGAATCGAT 351
Query 361 CTCAATCACGCAGATATCGCTGGTTATTTACCTGAAGAGCTTGGTTTGTTATCAGATCTT 420
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CTCAACCACGCCGATATCGCTGGTTATTTACCTGAAGAGCTTGGTTTGTTATCAGATCTC 411
Query 421 GCTTTGTTTCATGTTAATTCAAACCGGTTTTGTGGTACTGTACCACACCGGTTTAACCGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GCTTTGTTTCATGTTAATTCAAACCGGTTTTGTGGTACTGTACCACACCGGTTTAACCGG 471
Query 481 CTTAAGCTTTTATTCGAGCTTGATCTTAGTAACAACCGGTTCGCTGGGAAGTTTCCGACG 540
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 472 CTAAAGCTTTTATTCGAGCTTGATCTTAGTAACAACCGGTTCGCTGGGAAATTTCCGACG 531
Query 541 GTTGTCTTGCAATTACCGTCGTTGAAGTTTTTAGATCTCCGGTTTAATGAATTTGAAGGA 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTTGTCTTGCAATTACCATCGTTGAAGTTTTTAGATCTCCGGTTTAATGAATTTGAAGGA 591
Query 601 ACTGTACCGAAAGAGCTTTTTAGTAAAGATCTTGACGCGATTTTCATAAACCATAACCGG 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 592 ACTGTACCGAAAGAGCTTTTTAGTAAAGATCTTGACGCGATTTTTATAAACCATAACCGG 651
Query 661 TTCCGGTTTGAATTACCGGAGAATTTTGGTGATTCGCCGGTTTCGGTTATTGTTTTGGCG 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTCCGGTTTGAGTTACCGGAGAATTTTGGTGATTCGCCGGTTTCGGTTATTGTTTTGGCG 711
Query 721 AATAACCGGTTCCATGGTTGTGTACCATCGAGCTTGGTGGAGATGAAGAATCTTAACGAG 780
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 712 AATAACCGGTTCCATGGTTGTGTACCTTCGAGTTTGGTGGAGATGAAGAATCTTAACGAG 771
Query 781 ATCATCTTCATGAACAATGGTCTTAATTCTTGTTTACCGTCTGATATCGGACGGTTAAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ATCATCTTCATGAACAATGGTCTTAATTCTTGTTTACCGTCTGATATCGGACGGTTAAAG 831
Query 841 AACGTGACGGTGTTTGACGTCAGTTTTAATGAACTTGTTGGGCCGTTACCGGAGAGTGTT 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 832 AACGTGACGGTGTTTGACGTCAGTTTTAACGAACTTGTTGGGCCGTTACCGGAGAGTGTT 891
Query 901 GGTGAGATGGTTTCGGTGGAGCAGCTTAATGTGGCGCATAATATGTTGTCGGGGAAGATT 960
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 892 GGTGAGATGGTTTCGGTGGAGCAGCTTAATGTGGCGCATAATAAGTTGTCGGGGAAGATT 951
Query 961 CCGGCGAGTATTTGTCAGTTACCGAAGCTTGAGAATTTCACTTATAGTTACAATTTCTTT 1020
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 952 CCGGCGAGTATTTGTCAGTTACCGAAGCTTGAGAACTTCACTTATAGTTACAATTTCTTT 1011
Query 1021 ACCGGAGAAGCGCCTGTGTGTTTGAGGTTGCCGGAGTTTGATGATCGGAGAAATTGTTTG 1080
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ACTGGAGAAGCGCCTGTGTGTTTGAGGTTGCCGGAGTTTGATGATCGGAGAAATTGTTTG 1071
Query 1081 CCGGGAAGACCTGCTCAGAGGTCTCCAGGGCAATGTAAAGCGTTTTTGTCTCGTCCGCCG 1140
|||||||||||||||||||| || || || ||||||||||| ||||||||||||||||||
Sbjct 1072 CCGGGAAGACCTGCTCAGAGATCGCCTGGTCAATGTAAAGCTTTTTTGTCTCGTCCGCCG 1131
Query 1141 GTAAATTGTGGATCGTTTAGTTGTGGCCGTTCTGTGTCGCCTCGTCC-TCCGGT 1193
|| |||||||||||||||||||| || |||||||| | ||||||||| ||||||
Sbjct 1132 GTGAATTGTGGATCGTTTAGTTGCGGTCGTTCTGTTTTGCCTCGTCCCTCCGGT 1185
Score = 774 bits (419), Expect = 0.0
Identities = 572/639 (90%), Gaps = 37/639 (6%)
Strand=Plus/Plus
Query 1798 TCTCCACCACCCACTCCGGTCTATTCCCCTCCTCCCCCACCTCCTTGTATAG----A--A 1851
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1195 TCTCCACCACCCACTCCGGTCTATTCCCCTCCTCCCCCACCTCCTTGTATAGAACCACCA 1254
Query 1852 CCACCACCACCTCCACCGTGTATAGAGTATTCACCTCCTCCTCCTCCACCAGTCGTTCAT 1911
|||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1255 CCACCACCACCTCCACCGTGTATAGATTATTCA---CCTCCTCCTCCACCAGTCATTCAT 1311
Query 1912 TATAGCTCTCCGCCTCCACCGCCAGTCTACTACAGCTCTCCGCCACCTCCACCAGTCTAT 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TATAGCTCTCCGCCTCCACCGCCAGTCTACTACAGCTCTCCGCCACCTCCACCAGTCTAT 1371
Query 1972 TACAGCTCTCCACCTCCGCCACCGCCGGTTCATTACAGCTCTCCGCCACCACCAGA-AGT 2030
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| | |||
Sbjct 1372 TACAGCTCTCCACCTCCTCCACCGCCGGTTCACTACAGCTCACCGCCACCACC-GCCAGT 1430
Query 2031 CCATTACCA-TTCTCCGCCTCCATCTCCAGTACACTACAGCTCTCCACCACCGCCACCAT 2089
||||||| | ||||||||| ||| | ||||| || ||||||||||| || ||||| ||||
Sbjct 1431 CCATTAC-AGTTCTCCGCCGCCACCGCCAGTCCATTACAGCTCTCCGCCGCCGCCGCCAT 1489
Query 2090 CAGCTCCATGTGAAGAATCTCCTccaccagcaccggtagttcaccacagtccaccaccgc 2149
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1490 CAGCTCCATGTGAAGAATCTCCTCCACCAGCACCGGTGGTTCACCACAGCCCACCACCAC 1549
Query 2150 ccatggttcaccacagcccaccacctcc---agt-gatccaccaaagcccaccaccgcca 2205
| |||||||||||||||||||||| || ||| | ||||||||||||||||||||||
Sbjct 1550 CGGTGGTTCACCACAGCCCACCACCACCGCCAGTAG-TCCACCAAAGCCCACCACCGCCG 1608
Query 2206 TCTCCTGAATATGAAGGACCACTACCACCGGTCATCGGCGTATCATACGCATCTCCTCCA 2265
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1609 TCTCCTGAATATGAAGGACCACTTCCACCGGTCATCGGAGTATCATACGCCTCTCCTCCA 1668
Query 2266 CCACCGCCGTTCTATTGATTCTTTTG-GAAAACACGAGACTGAAACGATTGACGTGACAC 2324
|||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |
Sbjct 1669 CCACCGCCGTTCTATTGATTCTTTTGAGAAA-CACGAGACTGAAACGAT-GAC---A--- 1720
Query 2325 GAACAGATCGAAACACTATACGACGTCGTTG-TCAATTCTTACaaaaagaaaaaaaaaaa 2383
|| | |||| ||||||||||||||||| |||||||||||| | ||||| |||||||
Sbjct 1721 GAT----T-GAAATACTATACGACGTCGTTGGTCAATTCTTACACAGAGAAAGAAAAAAA 1775
Query 2384 GAAATTATAAGA-AAAA-GAAATGGCTGATTAAAGAGTT 2420
|| |||||||| |||| |||||||||||||||| ||||
Sbjct 1776 -AA-TTATAAGAGAAAAAGAAATGGCTGATTAAAAAGTT 1812
> Ahg905564 jgi|Araly1|905564|Al_scaffold_0003_2692
Length=1479
Score = 1203 bits (651), Expect = 0.0
Identities = 946/1086 (87%), Gaps = 29/1086 (3%)
Strand=Plus/Plus
Query 160 ACCGTTGATCCTTCTCTAAACTTCGAGAATCCGA-GATTGCGAAATGCTTATATAGCTCT 218
||||| ||||| ||||||| |||||||||||| | || | |||| |||||| ||||||||
Sbjct 184 ACCGTAGATCCATCTCTAATCTTCGAGAATCC-ACGACTACGAAGTGCTTACATAGCTCT 242
Query 219 ACAAGCTTGGAAACAAGCGATTCTCTCTGATCCAAACAATTTCACT-TCGAATTGGATCG 277
||||||||||||||||| |||||||||||||| || ||| ||||| | ||||||||||
Sbjct 243 TCAAGCTTGGAAACAAGCTATTCTCTCTGATCCTAATAATATCACTGT-TAATTGGATCG 301
Query 278 GATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTCCG-GCGCTTGATAATCGGAAG 336
||||||||||||||||||||||||||||||||||||| | | || |||||||| ||||||
Sbjct 302 GATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCAC-GAGCTCTTGATAACCGGAAG 360
Query 337 ATTCGTACCGTCGCCGGAATCGATCTCAATCACGCAGATATCGCTGGTTATTTACCTGAA 396
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 361 ATCCGTACCGTCGCCGGAATCGATCTCAATCACGCCGATATCGCTGGGTATTTACCTGAA 420
Query 397 GAGCTTGGTTTGTTATCAGATCTTGCTTTGTTTCATGTTAATTCAAACCGGTTTTGTGGT 456
||||||||||||||| ||||||| |||||||||||||||||||| || || || |||||
Sbjct 421 GAGCTTGGTTTGTTAACAGATCTAGCTTTGTTTCATGTTAATTCGAATCGATTCTGTGGA 480
Query 457 ACTGTACCACACCGGTTTAACCGGCTTAAGCTTTTATTCGAGCTTGATCTTAGTAACAAC 516
||||| || || ||| || | |||||||||||| |||||||||||||||||||||||
Sbjct 481 ACTGTTCCTCATAAGTTCAAGCAGCTTAAGCTTTTGTTCGAGCTTGATCTTAGTAACAAT 540
Query 517 CGGTTCGCTGGGAAGTTTCCGACGGTTGT-CTTGCAATTACCGTCGTTGAAGTTTTTAGA 575
|| ||||| || |||||||| ||||| || ||| || || |||||||||||||| |||||
Sbjct 541 CGATTCGCCGGAAAGTTTCCAACGGTGGTTCTT-CATTTGCCGTCGTTGAAGTTCTTAGA 599
Query 576 TCTCCGGTTTAATGAATTTGAAGGAACTGTACCGAAAGAGCTTTTTAGTAAAGATCTTGA 635
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 600 TCTCCGGTTTAATGAGTTTGAAGGAACTGTACCGAAAGAGCTTTTTAGTAAAAATCTAGA 659
Query 636 CGCGATTTTCATAAACCATAACCGGTTCCGGTTTGAATTACCGGAGAATTTTGGTGATTC 695
||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 660 TGCGATTTTCATTAACCATAACCGGTTCCGGTTTGAGTTACCGGATAATTTCGGTGATTC 719
Query 696 GCCGGTTTCGGTTATTGTT-TTGGCGAATAACCGGTTCCATGGTTGTGTACC-ATCGAGC 753
|||||||||||||||||| ||| ||||||| | |||||||||||| | || | ||||
Sbjct 720 TCCGGTTTCGGTTATTGTTCTTG-CGAATAATCATTTCCATGGTTGTATTCCGA-CGAGT 777
Query 754 TTGGTGGAGATGAAGAATCTTAACGAGATCATCTTCATGAACAATGGTCTT-AATTCTTG 812
||||||||||||||||||||||| ||||| || |||||||| |||||| || ||||||||
Sbjct 778 TTGGTGGAGATGAAGAATCTTAATGAGATTATTTTCATGAATAATGGT-TTGAATTCTTG 836
Query 813 TTTACCGTCTGATATCGGACGGTTAAAGAACGTGACGGTGTTTGACGTCAGTTTTAATGA 872
||||||| | ||||||||| |||| |||||||||||||||||||| || |||||||||||
Sbjct 837 TTTACCGGCGGATATCGGAAGGTTGAAGAACGTGACGGTGTTTGATGTTAGTTTTAATGA 896
Query 873 ACTTGTTGGGCCGTTACCGGAGAGTGTTGGTGAG-ATGGTTTCGGTGGAGCAGCTT-AAT 930
|||||||| ||||| ||| |||||||||||| | ||||| |||| |||||| || |||
Sbjct 897 GCTTGTTGGTCCGTTGCCGAAGAGTGTTGGTG-GTATGGTGGCGGTTGAGCAG-TTGAAT 954
Query 931 GTGGCGCATAATATGTTGTCGGGGAAGATTCCGGCGAGTATTTGTCAG-TTACCGAAGCT 989
||||| |||||| |||| || ||||||||||||||||||||||||||| || ||||||||
Sbjct 955 GTGGCTCATAATCTGTTATCTGGGAAGATTCCGGCGAGTATTTGTCAGCTT-CCGAAGCT 1013
Query 990 TGAGAATTTCACTTATAGTTACAATTTCTTTACCGGAGAAGCGCCTGTGTGTTTGAGGTT 1049
||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 1014 TGAGAATTTCACTTATAGTTATAATTTCTTTACTGGTGAAGCTCCTGTGTGTTTGAGGTT 1073
Query 1050 GCCGGAGTTTGATGATCGGAGAAATTGTTTGCCGGGAAGACCTGCTCAGAGGTCTCCAGG 1109
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |
Sbjct 1074 GCCTGAGTTTGATGATCGGAGAAATTGTTTGCCTGGAAGACCTGCTCAGAGATCTTCACG 1133
Query 1110 GCAATGTAAAGCGTTT-TTGTCTCGTCCGCCGGTAAATTGTGGATCGTTTAGTTGTGGCC 1168
|||||| ||| ||| ||||| || ||||| || |||||||||| ||| ||||||| |
Sbjct 1134 TCAATGTTCAGC-TTTCTTGTCACGGCCGCCAGTGGATTGTGGATCTTTTGGTTGTGGTC 1192
Query 1169 GTTCTGTGTCG-CC-TCGTCCTCCGGTTGTAACGCCGTTACCACCGCCTTCTTTGCCATC 1226
||||||| | || || |||||| ||||| || ||||| ||||| || ||||||
Sbjct 1193 GTTCTGT-TAAACCGTC-TCCTCCTATTGTA--GCA-TTACCGCCGCCGCCTCCGCCATC 1247
Query 1227 TCCGCC 1232
|||||
Sbjct 1248 GCCGCC 1253
> Ahg492992 jgi|Araly1|492992|fgenesh2_kg.7__2425__AT4G18670.1
Length=2467
Score = 939 bits (508), Expect = 0.0
Identities = 865/1033 (84%), Gaps = 42/1033 (4%)
Strand=Plus/Plus
Query 162 CGTTGATCCTTCTCTAAACTTCGAGAATCCGA-GATTGCGAAATGCTTATATAGCTCTAC 220
||||||||| || ||| |||||||||||| | || | |||| |||||| |||||||| |
Sbjct 201 CGTTGATCCATCACTAGTCTTCGAGAATCC-ACGACTACGAAGTGCTTACATAGCTCTTC 259
Query 221 AAGCTTGGAAACAAGCGATTCTCTCTGATCCAAACAATTTCACTTCGAATTGGATCGGAT 280
|||||||||||||||| |||||||||||||||||||| ||||| | || |||||||| |
Sbjct 260 AAGCTTGGAAACAAGCTATTCTCTCTGATCCAAACAACTTCACAACAAACTGGATCGGTT 319
Query 281 CCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTCCGGCGCTT-GATAATCGGAAGATT 339
| |||| || | ||||||||||||| |||| |||||||| || |||||||| |||
Sbjct 320 CTGATGTTTGCAGTTACACCGGAGTTTACTGTGCTCCGGCG-TTAGATAATCGCCGGATC 378
Query 340 CGTACCGTCGCCGGAATCGATCTCAATCACGCAGATATCGCTGGTTATTTACCTGAAGAG 399
||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||| |||||
Sbjct 379 CGTACCGTCGCCGGAATAGATCTCAATCACGCTGATATTGCTGGTTATTTGCCTCAAGAG 438
Query 400 CTTGGTTTGTTATCAGATCTTGCTTTGTTTCATGTTAATTCAAACCGGTTTTGTGGTACT 459
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 439 CTTGGTTTGTTAACAGATCTCGCTTTGTTTCATGTTAATTCAAACCGGTTTTGTGGAACC 498
Query 460 GTACCACACCGGTTTAACCGGCTTAAGCTTTTATTCGAGCTTGATCTTAGTAACAACCGG 519
||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 499 GTACCGCATCGGTTTAATCGGCTTAAGCTTTTATTCGAGCTTGATCTCAGTAATAACCGG 558
Query 520 TTCGCTGGGAAGT-TTCCG-ACGGTTGT-CTTGCAATTACCGTCGTTGAAGTTTTTAGAT 576
||||| || || | |||| || ||||| || || || ||||||||||||||| | |||
Sbjct 559 TTCGCCGG-AA-TATTCCCTACCGTTGTACTC-CAGTTGCCGTCGTTGAAGTTTCTGGAT 615
Query 577 CTCCGGTTTAATGAATTTGAAGGAACTGTACCGAAAGAGCTTTTTAGTAAAGATCTTGAC 636
|| ||||||| || || |||||| |||| || | |||||| || || |||||||||||
Sbjct 616 CTAAGGTTTAACGAGTTCGAAGGACCTGTGCCTAGAGAGCTCTTCAGCAAAGATCTTGAT 675
Query 637 GCGATTTTCATAAACCATAACCGGTTCCGGTTTGAATTACCGGAGAATTTTGGTGATTCG 696
||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 676 GCGATTTTCATTAACCATAACCGGTTCCGGTTTGAGTTACCGGATAATTTGGGAGATTCT 735
Query 697 CCGGTTTCGGTTATTGTTTTGGCGAATAACCGGTTCCATGGTTGTGTACC-ATCGAGCTT 755
|||||||| ||||| ||| |||||||||| | ||||| |||||| | || | |||| ||
Sbjct 736 CCGGTTTCCGTTATCGTTGTGGCGAATAATCATTTCCACGGTTGTATTCCGA-CGAGTTT 794
Query 756 GG-TGGAGATGAAGAATCTT-AACGAGATCATCTTCATGAACAATGG-TCTTAATTCTTG 812
|| || | |||||||||||| || |||||||| || ||||||||||| | || |||||||
Sbjct 795 GGGTG-ATATGAAGAATCTTGAA-GAGATCATTTTTATGAACAATGGGT-TTGATTCTTG 851
Query 813 TTTACCGTCTG-ATATCGGACGGTT-AAAGAACGTGACGGTGTTTGACGTCAGTTTTAAT 870
||||||| | | | ||||||||||| ||| ||||| ||||| ||||| ||||||||||
Sbjct 852 TTTACCGCC-GCAGATCGGACGGTTGAAA-AACGTAACGGTTTTTGATTTCAGTTTTAAC 909
Query 871 GAACTTGTTGGGCCGTTACCGGAGAGTGTTGGTGAGATGGTTTCGGTGGAGCAGCTTAA- 929
||||| |||||| ||||||||| |||| |||| | |||||||||| |||||||| ||||
Sbjct 910 GAACTGGTTGGGTCGTTACCGGCGAGTATTGGCGGGATGGTTTCGTTGGAGCAG-TTAAA 968
Query 930 TGTGGCGCATAATATG-TTGTCGGGGAAGATTCCGGCGAGTATTTGTCAGTTACCGAAGC 988
|||||||||||||| | || || || | |||||||||||||||||||||||| |||| |
Sbjct 969 TGTGGCGCATAATA-GATTCTCTGGTAGGATTCCGGCGAGTATTTGTCAGTTGCCGAGG- 1026
Query 989 TTG-AGAATTTCACTTAT-AGTTACAATTTCTTTACCGGAGAAGCG-CCTGTGTGTTTGA 1045
||| |||||||||||| | |||||||||||||| |||||||| || || |||||| |
Sbjct 1027 TTGGAGAATTTCACTT-TCAGTTACAATTTCTTCACCGGAGA-GCCACCCGTGTGTCTC- 1083
Query 1046 GGTT-GCC-GGAGTTTGATGATCGGAGAAATTGTTTGCCGG-GAAGACCTGCTCAGAGGT 1102
|||| ||| || ||||||||||| | | ||||||||||||| || ||||||| ||||| |
Sbjct 1084 GGTTTGCCTGG-GTTTGATGATCAGCGGAATTGTTTGCCGGCGA-GACCTGCGCAGAGAT 1141
Query 1103 CTCCAGGG-CAATGTAAAGCGTTTTTGT-CTCGTCCGCCGGTAAATTGTGGATCGTTTAG 1160
|||| ||| |||||| || ||| | | ||| ||| ||||| ||||||| || ||| |
Sbjct 1142 CTCC-GGGACAATGTGCGGC-TTTCTCTTCTCTTCCACCGGTGGATTGTGGTTCATTTGG 1199
Query 1161 TTGTGGCCGTTCT 1173
||||||||||||
Sbjct 1200 ATGTGGCCGTTCT 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92254573390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5