BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13345.1
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497050 jgi|Araly1|497050|fgenesh2_kg.9__15__AT4G13345.1 2237 0.0
> Ahg497050 jgi|Araly1|497050|fgenesh2_kg.9__15__AT4G13345.1
Length=1749
Score = 2237 bits (1211), Expect = 0.0
Identities = 1412/1505 (94%), Gaps = 30/1505 (2%)
Strand=Plus/Plus
Query 475 TATTTTTTGCCAAGGATCTATATATGATCTTCCAATGTCATGAAGAAGAGAGAGTCTGCT 534
|||| ||||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 269 TATTATTTGCCAAGGATC----TATGATCTTCCAATGTCATGAAGAAGGGAGAGTTTGCT 324
Query 535 -AGATTTAAGGACTTATGGAAACCGGTACAAGCATTGACAACACTGGCTATGAAGGAATC 593
|| ||||| |||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 325 AAG-TTTAAAGACTTATGGAGACCGGTACAAGCATTGACAAGAATGGCTATGAAGGAATA 383
Query 594 AAGAACGGTTCATGGTTTATCCAGTTCCGTAATGGCTGCAATCCATGGATGGCTAGATAT 653
||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 384 AAGAACGGTTCGTGGTTTAGCCAGTTTCGTAATGGCTGCAATCCATGGATGGCTAGATAT 443
Query 654 GTGTACGGTCTAATATTCCTCTTGGCAAATCTGCTT-GCTTGGGCCTTGCGTGATTATGG 712
||||||||||| |||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct 444 GTGTACGGTCTGATATTCCTCTTGGCAAATTTG-TTGGCTTGGGCCTTGCGCGATTATGG 502
Query 713 CCGAGGCGCCTTGACCGAAATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGACTGTTT 772
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 503 CCGAGGTGCCTTGACCGAGATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGAGTGTTT 562
Query 773 AGGGACGGAAGGAGTTTTACGAGTTAGCTTCGGATGTTTTTTGTTCTATTTCATTATGTT 832
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 563 GGGGACGGAAGGAGTTTTACGAGTAAGCTTGGGATGTTTTTTGTTCTATTTCATTATGTT 622
Query 833 TCTTTCAACCGTTGGGACATCAAAGACGCATTCATCGAGAGATAAATGGCATTCAGGATG 892
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 623 TCTTTCAACCGTTGGCACATCAAAGACGAATTCATCGAGAGATAAATGGCATTCAGGATG 682
Query 893 GTGGTTTGCTAAGCTTTTCATGTTGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTC 952
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 683 GTGGTTTGCTAAGCTTTTCATGTGGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTC 742
Query 953 TTCCATTATTCAGTTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTCTTTCTCCTAAT 1012
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 743 TTCCATTATTCAGCTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTATTTCTCCTAAT 802
Query 1013 TCAGCTGATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGTTTCCAAGCACAAAA 1072
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 803 TCAGCTCATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGCTTCCAAGCACAAAA 862
Query 1073 AGATGCAGAAAGATGCCATGTCCATGTAATGCTACTAGCGACTACTGCGTACACCGTGTG 1132
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 863 AGATGCAGAAAGATGCCATGTCCATGTGATGCTACTAGCGACTACTGCGTACACCGTATG 922
Query 1133 CATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGAACCATCATGCCTTCTCAA 1192
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 923 CATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGATCCATCATGCCTTCTCAA 982
Query 1193 CATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCA 1042
Query 1253 CCCCAAAATAAATGCTGGATTCTTGACTCCAGCGCTTATGGGGCTTTACGTTGTGTTTAT 1312
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1043 CCCCAAAATAAATGCTGGATTCTTGACTCCAGCACTTATGGGGCTTTATGTTGTGTTTAT 1102
Query 1313 CTGCTGGTGCGCCATTCGAAGTGAGCCTGTAGGAGAAACTTGCAA-CAGAAAAGCAGAAG 1371
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||
Sbjct 1103 CTGCTGGTGCGCCATTCGAAGTGAGCCAGTAGGAGAAACTTGCAATC-GAAAAGCCGAAG 1161
Query 1372 GTTCTAGTAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGCTTGCAATGG 1431
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1162 GTTCTAGCAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGGTTGCAATGG 1221
Query 1432 TAATAGCGACATTCTCGACGGGAGTAGATTCACAATGTTTTCAGTTTAGAAAAGATGAGA 1491
|||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1222 TAATTGCGACATTCTCCACGGGCGTAGATTCCCAATGTTTCCAGTTTAGAAAAGATGAGA 1281
Query 1492 ATCATGAGGAAGATGCAATTCCTTACGGATACGGATTCTTTCATTTTGTGTTTGCTACTG 1551
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1282 ATCATGAGGAAGATGCAATTCCTTACGGATATGGATTCTTCCATTTTGTGTTTGCTACCG 1341
Query 1552 GAGCAATGTACTTTGCAATGCTACTTGTTGGTTGGAACATTCACCATTCCATGAAAAAGT 1611
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1342 GAGCAATGTACTTTGCGATGCTACTTGTTGGCTGGAACATTCATCATTCCATGAAAAAGT 1401
Query 1612 GGACGATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATTGTAAACGAATGGCTCGCGG 1671
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1402 GGACCATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATAGTGAACGAATGGCTCGCGG 1461
Query 1672 TTGGCGTTTACATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACAT 1731
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 TTGGCGTTTATATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACAT 1521
Query 1732 GAGAGATCACCACAGAGAGATTTTTGTCACCTCTCAATTCATCTCCGCATTGTGGATCTT 1791
|||||||||| |||||||||||||| ||| |||| | || | | | | | |||||
Sbjct 1522 GAGAGATCACTACAGAGAGATTTTT-TCA--TCTCGGT--AT-T--G--T-G-G-ATCTT 1568
Query 1792 GTCGAAAAATAGAATAGAAGATTTAAGATTG-AGGAACTGTGTGAAATCAAT-ATATATT 1849
||||||||||||||||||||||| ||||||| | ||||||||||||||| | |||||||
Sbjct 1569 GTCGAAAAATAGAATAGAAGATT-AAGATTGGAT-AACTGTGTGAAATCA-TCATATATT 1625
Query 1850 TGTACTTAGATTGTTTAGGATCAAAGAAAGATGGATACAAATATAGCTATACACTAGTAA 1909
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1626 TGTACTTAGATTCTTTAGGATCAAAGAAAGATGGATACAAATATAGCTATAGATTAGTAA 1685
Query 1910 TACTGTCCCTAA-AGAGTTCTCTAATCATGAAGCGTGTACACATTATAACACATACATCT 1968
||||| |||||| || || ||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 1686 TACTGACCCTAATAGGGT-CTCTATTCATGAAGCGTGTACACGTTATTACACATACATCT 1744
Query 1969 CTCTA 1973
|||||
Sbjct 1745 CTCTA 1749
Score = 359 bits (194), Expect = 5e-98
Identities = 243/265 (92%), Gaps = 9/265 (3%)
Strand=Plus/Plus
Query 7 AAGAAAGAAAGTGTTTTAAAAGAGAGC-AAACTCAGAAGAAACAACAAAACCTGAAATCA 65
||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAAGAAAGTG-TTTAAAA-AGAGCAAAACTCAGAAGAAACAACAAAACCTGAAATCA 58
Query 66 TTCATTTTCTTCTTCTTCACAATTTTCTCTCTGATCGTTTTT-GGGTTTCTCATTTATAA 124
|| ||||||||||| |||||||||| ||||| |||| ||||| ||||||||||||| |||
Sbjct 59 TTAATTTTCTTCTTTTTCACAATTTCCTCTCAGATCTTTTTTGGGGTTTCTCATTTGTAA 118
Query 125 GTAAAACCTCTAATAAGAAACATTTTTCACATCACCAGATCCGATCTTGAGCTTTTGCAC 184
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 119 GTAAAACCTCTAATAAGAAACATTTTTCACATCTCCAGATCTGATCTTGAGCTTTTGCAC 178
Query 185 CAGCaaaaaaaaaaCAGGTTCTTTGTTCTACTGAAGGAAGACAACTAAACGCTACTGGAG 244
|||||||||||||||| |||||||||||| |||||||||||| |||| ||| ||||||
Sbjct 179 CAGCAAAAAAAAAACAAGTTCTTTGTTCT---GAAGGAAGACAAGTAAAGGCTTCTGGAG 235
Query 245 TGTCTTTCTTGTGTTTAGTCCGGTC 269
| ||||||||||||||||| ||||
Sbjct 236 T--CTTTCTTGTGTTTAGTCTGGTC 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999692405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5