BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13350.1
Length=2339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358984 jgi|Araly1|358984|fgenesh1_pg.C_scaffold_9000024 2817 0.0
> Ahg358984 jgi|Araly1|358984|fgenesh1_pg.C_scaffold_9000024
Length=1806
Score = 2817 bits (1525), Expect = 0.0
Identities = 1716/1810 (95%), Gaps = 5/1810 (0%)
Strand=Plus/Plus
Query 131 ATGGCGGGTCGAGTTAAAGAAGACGAGAAGAACGAGAAGATTATTAGGAGTCTTCTTAAA 190
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGAATCGAGTTAAAGAAGACGAGAAGAACGAGAAGATTATTAGGAGTCTTCTCAAA 60
Query 191 CTTCCTGAGAATAAGAGGTGTATAAACTGTAACAGCCTTGGACCACAATATGTTTGCACT 250
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTTCCTGAGAATAAGAGATGTATAAACTGTAACAGCCTTGGACCACAATATGTTTGTACT 120
Query 251 ACTTTCTGGACTTTTGTTTGTACCAACTGCAGTGGAATACATCGTGAGTTTACACATCGT 310
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 ACTTTCTGGACTTTTGTTTGTACCAACTGCAGTGGAATACACCGTGAGTTTACACACCGT 180
Query 311 GTTAAATCGATATCAATGGCGAAATTTACCTCACAAGAAGTTACTGCTTTGAAAGAAGGT 370
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTTAAATCGATATCAATGGCGAAATTTACCTCACAAGAAGTTACTGCTTTAAAAGAAGGT 240
Query 371 GGAAATCAGCATGCTAAGGATATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTG 430
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 241 GGAAATAAGCATGCTAAGGATATTTATTTTAAAGGACTGGATCAACAGAGGCAGTCAGTG 300
Query 431 CCTGACGGAAGTAATGTTGAGCGGTTAAGGGACTTCATCAGACATGTGTATGTAAATAAA 490
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CCTGACGGAAGTAATGTTGAGCGGTTAAGGGACTTCATCAGACATGCGTATGTAAATAAA 360
Query 491 AGGTATACGAATGAGAAGAATGATGATAAGTCTCCAAGTGAGACACGTAGTTCTAGTGGT 550
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AGGTATTCGAATGAGAAGAATGATGACAAGTCTCCAAGTGAGACACGTAGTTCTAGTGGC 420
Query 551 TCTCGGAGTCCACCTTATGAAGATGGATATGACCGTCGTTACGGCGACAGATCAAGTCCT 610
||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 421 TCTCGAAGTCCACCATATGAAGATGTATATGACCGTCGTTACAGCGACAGATCAAGTCCT 480
Query 611 GGTGGGAGAAGTCCAGGGTTCGAGACGGGTAGTAGGAATGCTGTTAATAACAGAAAAAGC 670
|||||||||||||||||||| ||| | ||||| |||||||||||||||||||| ||||||
Sbjct 481 GGTGGGAGAAGTCCAGGGTTTGAGCCAGGTAGCAGGAATGCTGTTAATAACAGGAAAAGC 540
Query 671 CCTGCTCGTCCTGAGATCCTGAATGATTGGCGCAGAGAGGATAGGTTTGGGGGTAGAAAA 730
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 541 CCTGCTCGTCCTGAGATCCTGAATGATTGGCGCAGAGAAGATAGATTTGGGGGTA-AAAA 599
Query 731 -ACATCAGAAGAGGGCTCCCAGTCACCTGAGCAAGTAAAAGACTTGGGTTCAGCTAGCCC 789
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 GACATCAGAAGAGGGCTCCCAGTCACCTGAGCAAGTAAAAGACTTGGGCTCAGCTAGCCC 659
Query 790 TCCTGTAGCTCGACCTGTTAGGGAAATTTTGGGTGACAGTGTTATTCCTCTTCGTGTGGG 849
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 660 TCCTGTAGCTCGACCTGTTAGGGAAATTTTAGGTGACAGTGTTATTCCTCTTCGCGTGGG 719
Query 850 AGAGCCTCCAAAACCCCCTGTCAGTAGAAATACCGATGCTTCAGCACATGCAAAGTCAGG 909
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 720 AGAGCCTCCAAAACCCCCTGTCAGCCGAAATACCGATGCTTCAACACATGCAAAGTCAGC 779
Query 910 TACATCATTGAGTAGTTTAATGTCCACAAATGAGAAGCCACCAGAAGTGAAGCTGGAGAC 969
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 780 TACACCATTGAGTAGTTTAATGGCCACAAATGAGAAGCCACCAGAAGCAAAGCTAGAGAC 839
Query 970 TGCTTTAAGCCTGATTGATTTTGATACTGATTTTGAAACTCCTGCTCCATCTGTTGCAAT 1029
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 TGCTTTAAGCCTGATTGATTTTGATACTGATTTTGAACCTCCTGCTCCATCTGTTGCAAT 899
Query 1030 TCAAGCACCACTATCGACCACATCTCAGCCTGCTCCACAGCCAACAACTTCATCTAATGA 1089
|||||| | | |||||||||| ||||| ||| |||||||||| ||| ||||||||||||
Sbjct 900 ACAAGCA-C-C-ATCGACCACACCTCAGACTGTTCCACAGCCAGCAAGTTCATCTAATGA 956
Query 1090 TAACTGGGCATCTTTCGATGCTGCACCCAGTGCCCCTAGTTTAAATGTATCGCAACCACC 1149
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 TAACTGGGCGTCTTTCGATGCTGCACCCAGTGCCCCTAGTTTAAATGTGTCGCAACCACC 1016
Query 1150 ACCCAGTGGAAACACACTGGATTCACTTCTCTCCCAGTTGGCAGTGACTTCTTCTGTGCC 1209
||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||
Sbjct 1017 ACCCAATGGAAACACACTGGATTCAATTCTCTCTCAGTTGGCAGTGAATTCTTCTGTGCC 1076
Query 1210 AGGTCAGGCGTCTACACCATCTAACGGACCTGTGAATCTTGGTCATTCCACGTCACAAAT 1269
|||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1077 GGGTCAGACGTCTATACCATCTAACGGACCTGTGCATCTTGGTCATTCCACGTCACAAAT 1136
Query 1270 CTTTGCACCCTTTCAGAATGAGCATTCGAGTGAACAGCCATGGAACACAGCACTTGCATC 1329
||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1137 CTTTGCACCATTTCCGAATGAGCATTCGAGTGAACAGCCATGGAACACAGAACTTGCATC 1196
Query 1330 TAATGTACAGAGGTCAATGAGTGCACCGTCATTGCAACCTCTTCAAGGAGTCCCTTCTGG 1389
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1197 TAATGTACATAGGTCAATGAGTGCACCGTCATTACAACCTCTTCATGGAGTCCCTTCTGG 1256
Query 1390 TGGCCTGCAGTCTTCTGAAGTTAAACCTTCGGGAAGATCAGAATTACCTGCGGATTTATT 1449
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 TGGCCAGCAGTCTTCTGAAGTTAAACCTTCCGGAAGATCAGAATTACCTGCGGATTTATT 1316
Query 1450 CGCTGTAAACTACCCATCATACCATGCACCAGTGCCTGGATGGCAAGCTGGTCCACCTCA 1509
|||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1317 CGCTGTAACCTACCCATCATACCATGCACCAGCGCCTGGGTGGCAAGCTGGTCCACCTCA 1376
Query 1510 TGCTATGCACTATGGCATGCAGCAGTATAATAACCCCGTGCCGTATCAGAATGTTCCGCA 1569
||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1377 TGCTATGCATTATGGCATGCAGCAGTATAATAACCCTGTGCCATACCAGAATGTTCCGCA 1436
Query 1570 GCCAGGCAAGTCAATGAACCCTTTTGACTTCAGCCCTGGGCCGCCATCACAAACACAAAC 1629
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1437 ACCAGCCAAGTCAATGAACCCTTTTGACTTCAGCCCTGGGCCTCCATCACAAACGCAAAC 1496
Query 1630 GGAAAATATGTTCCCTTCCATGGCTCCTCTGCAAGGTGCATTACCTCCTTCAGGCATGAT 1689
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GGAAAATCTGTTCCCTTCCATGGCTCCTCTGCAAGGTGCATTACCTCCTTCAGGCATGAT 1556
Query 1690 GCCTTCTCAAGGAGTACACAATCAATTCAATATACCTTCTCAAGGCTCAGCCCATCCATC 1749
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1557 GCCTTCTCAAGGAGTACACAACCAATTCAATATACCTTCTCAAGTCTCAGCCCATCCATC 1616
Query 1750 TGCAATGCCACCAAGGTACATGCCTTCTCAAATACCAGGAAGCATGCCACCTAGCAATGT 1809
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1617 GGCAATGCCACCAAGGTACATGTCTTCTCAATTACCAGGAAGCATGCCACCTAGCAATGT 1676
Query 1810 AAACCCAATTGGCGACATAAACACGTCATATGACACTCAACAAACATATCAAAATTTTGG 1869
|||||||||||||| ||| ||| | ||||||||| | |||||||||||||||||||| ||
Sbjct 1677 AAACCCAATTGGCGGCATGAACGCTTCATATGACGCCCAACAAACATATCAAAATTTCGG 1736
Query 1870 AAGCTCGTTTGCTGCTGCAGTTCCTTTGAACCCACCTTCTTTCCAATCAGGAGGAAACCC 1929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 AAGCTCGTTTGCTGCTGCAGTTCCTTTGAACCCACCTTCTTTCCAATCAGGAGGAAACCC 1796
Query 1930 ATTTGGGTAA 1939
|||||||||
Sbjct 1797 GTTTGGGTAA 1806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88102736685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5