BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13360.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332986 jgi|Araly1|332986|fgenesh1_pm.C_scaffold_9000014 1929 0.0
Ahg930529 jgi|Araly1|930529|scaffold_302986.1 1197 0.0
Ahg900061 jgi|Araly1|900061|Al_scaffold_0004_711 268 6e-71
> Ahg332986 jgi|Araly1|332986|fgenesh1_pm.C_scaffold_9000014
Length=1257
Score = 1929 bits (1044), Expect = 0.0
Identities = 1193/1264 (94%), Gaps = 14/1264 (1%)
Strand=Plus/Plus
Query 12 ATCATCAAAACTTTGTCTCATCGCATCTTTTTCCCCAAATTCTCA-CAAACCTTCTCTTC 70
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 4 ATCATCAAAACTTTGTCTCATCGCATCTTTTTCCCCAAATTCTCATC-AACCTTCTC-T- 60
Query 71 TCAATTCCACCAAACCCTCAGATTCTCAATCTCCGATCGTCGGAAATTCTCAGCGATGGC 130
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TC---T-CACCAAACCCTCAGATTCTCAATCTCCGATCGTCGGAAATTCTCAGCGATGGC 116
Query 131 CGGAGCTGGCGTCGATGATTTCGTTAAAGGAAATGTTTTTCCGAATGGTGTCGCTCTCAT 190
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CGGAGCTGGCGTCGACGATTTCGTTAAAGGAAATGTTTTTCCGAATGGTGTCGCTCTCAT 176
Query 191 CACTCTCGATCGAACCAAAGCTCTCAACGCCATGAAT-TTAGATATGGATATAAAGTATA 249
|||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 177 CACTCTCGATCGTACCAAAGCTCTCAACGCCATGAATCTT-GATATGGATATTAAGTATA 235
Query 250 AAAGCTTTCTTGATGAATGGGAATCTGATCCGAGAGTGAAATGTGTTATCGTTGAAGGAA 309
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 236 AAAGCTTTCTTGACGAATGGGAATCTGATCCGAGAGTCAAATGTGTTATCGTTGAAGGCA 295
Query 310 GCACATCTAGGGCCTTTTGTGCAGGGATGGATATTAAAGGAGTTGCTGCAGAAATCCAAA 369
| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 296 GTACACCTCGAGCCTTTTGTGCAGGGATGGATATTAAAGGAGTTGCTGCAGAAATCCAGA 355
Query 370 AGGACAAAAACACACCTCTTGTGCAAAAGGTATTTACAGCAGAGTATACACTGATATGTG 429
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 356 AGGACAAAAACACACCTCTTGTGCAAAAGGTGTTTACAGCAGAATATACTCTGATATGCG 415
Query 430 CAATTGCT-GCGTACAAAAAGCCATATATTTCATTGATGGATGGTATAACAATGGGATTT 488
|||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 416 CAATTGCTGGC-TACAAAAAGCCATATATCTCATTAATGGATGGTATAACAATGGGATTT 474
Query 489 GGTCTTGGTCTTTCTGGACATGGTCGCTACCGTGTGATAACAGAGAGGACGGTTCTTGCC 548
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 GGTCTAGGTCTTTCTGGACATGGTCGCTACCGTGTGATAACTGAGAGGACGGTTCTTGCC 534
Query 549 ATGCCAGAAAATGGAATTGGCTTGTTCCCTGATGTCGGGTTTTCATATATAGCAGCTCAT 608
||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 535 ATGCCAGAAAATGGAATCGGCTTATTCCCAGATGTCGGCTTTTCATATATAGCAGCTCAT 594
Query 609 AGCCCTGGAGGAGGATCTGTTGGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCG 668
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 595 AGCCCTGGAGGAGGATCTGTTGGTGCTTATCTTGGTTTGACTGGAAAAAGGATCTCCACA 654
Query 669 CCATCAGACGCACTGTTCGTTGGTCTTGGGACGCATTATGTACCATCTGAAAAGCTAGCT 728
|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 CCATCAGATGCATTGTTCGTTGGTCTTGGGACACATTATGTACCATCTGAAAAGCTAGCT 714
Query 729 TCATTAAAGGAAGCCATTTTGTCAGCTAACCTTTCTGAGGATCCTAATCAAGACATCCAA 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 715 TCATTAAAGGAAGCCATTTTGTCAGCTAACCTTTCTGAGGATCCTAATCAAGACATACAA 774
Query 789 GCAACTTTATCAAAATACAGCAGCAATCCTGAATCTGAGGCCCATCTCAAATCACTTTTG 848
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 775 GCAACTTTATCAAAATACAGCGGCAATCCTGAATCTGATGCCCATCTCAAATCGCTTTTG 834
Query 849 CCTCACATAGAGTCAGCCTTTAGCTCAAATAAGTCTATTAAGGAAACAATAGAAGAGCTC 908
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 835 CCTCAAATAGAGTCAGCCTTTAGCTCAAATAAGTCTGTTAAGGAAACAATAGAAGAGCTC 894
Query 909 AAAAAGTACCAGCAAAGCACTGAGTCTTCAGTTGTAGAATGGGCTAATGAGGCACTCAAA 968
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 895 AAAAAGTACCAGCGAAGCACTGAGCCTTCAGTTGTGGAATGGGCTAATGAGGCACTCAAA 954
Query 969 GGTTTGGAAAAAGGAGCACCATTTTCTCTTTACCTAACACAAAAGTATTTCTCCAATGTT 1028
|||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct 955 GGTTTGGAAAAAGGAGCACCGTTCTCTCTTTATCTAACACAAAAGTACTTCTCCAATGTT 1014
Query 1029 GCATGTGCCAAGAGTAAACCCGAAAACGAATTAGCAACACTTAATGGCGTAATGAAAACT 1088
|||| ||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1015 GCATCTGCTAAGGGTAAAACCGAAAACGAATTAGCAACACTTAATGGCGTGATGAAAACT 1074
Query 1089 GAGTATCGCATTGCACTAAGATCTGCCCTGCGTGGTGATTTTGCTGAAGGTGTTAGAGCA 1148
|| || ||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 1075 GAATACCGCATCGCACTAAGATCAGCCTTGCGTGGTGATTTTGCTGAAGGCGTTAGAGCA 1134
Query 1149 GTTTTGATTGACAAGGATCAGAATCCAAAATGGAACCCGACAAGCATTGAAGAGGTAGAC 1208
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1135 GTTTTGATTGACAAGGATCAGAACCCAAAATGGAACCCGGCAAGCATTGAAGAGGTAGAC 1194
Query 1209 GAAAACGAAGTGGAAGCTCTGTTTAAACCATTAAGTCCAG-AAGTGGAAGAGTTAAAAGT 1267
| ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1195 GGAAACGAAGTAGAAGCTCTGTTTAAACCATTAAGTC-AGGAAGTGGAAGAGTTAAAAGT 1253
Query 1268 CTGA 1271
||||
Sbjct 1254 CTGA 1257
> Ahg930529 jgi|Araly1|930529|scaffold_302986.1
Length=1293
Score = 1197 bits (648), Expect = 0.0
Identities = 1009/1181 (85%), Gaps = 33/1181 (3%)
Strand=Plus/Plus
Query 106 ATCGTCGGAAATTCTCAGCGATGGCCGGAGCTGG-CGTCGATGATTTCGTTAAAGGAAAT 164
|||| ||||||||||||| ||||||| | ||| | ||| || ||||| |||||||||
Sbjct 110 ATCGCCGGAAATTCTCAGTGATGGCC--A-ATGGAAG-CGACGAGTTCGTGAAAGGAAAT 165
Query 165 GTTTTTCCGAATGGTGTCGCTCTCATCACTCTCGATCGAACC-AAAGCTCTCAACGCCAT 223
|||| ||| ||||| || ||| |||||||||| | | | ||| |||||||||||||||||
Sbjct 166 GTTTATCCAAATGGCGTTGCTTTCATCACTCTTGTTTG-ACCTAAAGCTCTCAACGCCAT 224
Query 224 GAATTTAGATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGAG 283
|||| |||| |||||| | ||||| |||||||| |||||||||||||||||||| || ||
Sbjct 225 GAATCTAGAAATGGATTTGAAGTACAAAAGCTTGCTTGATGAATGGGAATCTGACCCTAG 284
Query 284 AGTGAAATGTGTTATCGTTGAAGGAAGCACATCTAGGGCCTTTTGTGCAGGGATGGATAT 343
|| ||||||||| | |||||||| |||||| || |||||||||||||||||||||||||
Sbjct 285 TGTCAAATGTGTTGTTGTTGAAGGCAGCACACCTCGGGCCTTTTGTGCAGGGATGGATAT 344
Query 344 TAAAGGAGTTGCTGCAGAAATCCAAAAGGACAAAAACACACCTCTTGTGCAAAAGGTATT 403
||||||||||| |||||| |||| || |||||||||||| |||||||| ||||||||||
Sbjct 345 TAAAGGAGTTGTTGCAGAGATCCTAATGGACAAAAACACGTCTCTTGTGAAAAAGGTATT 404
Query 404 TACAGCAGAGTATA-CACTGATATGTGCAA--TTGCTGCG-TACAAAAAGCCATATATTT 459
|||||| || |||| | |||||||| ||| |||||| | ||||||||||||||||| |
Sbjct 405 TACAGCTGAATATAGC-CTGATATG--CAAGATTGCTG-GATACAAAAAGCCATATATCT 460
Query 460 CATTGATGGATGGTATAACAATGGGATTTGGTCTTGGTCTTTCTGGACATGGTCGCTACC 519
| || |||||||| |||||||||||||||||||| || || |||||||||||||||||||
Sbjct 461 CTTTAATGGATGGCATAACAATGGGATTTGGTCTAGGCCTCTCTGGACATGGTCGCTACC 520
Query 520 GTGTGATAACAGAGAGGACGGTTCTTGCCATGCCAGAAAATGGAATTGGCTTGTTCCCTG 579
| |||||||||||||||||||| || || ||||||||||||||||| |||||||| || |
Sbjct 521 GCGTGATAACAGAGAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCGG 580
Query 580 ATGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTGGTGCTTATC 639
|||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 581 ATGTTGGATTTTCATATATAGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTACC 640
Query 640 TTGGTTTGACTGGTAAAAGGATCTCCGCGCCATCAGACGCACTGTTCGTTGGTCTTGGGA 699
||||| ||||||| | |||||| ||| | || ||||| |||||||| || ||||||||||
Sbjct 641 TTGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGA 700
Query 700 CGCATTATGTACCATCTGAAAAGCTAGCTTCATT-AAAGGAAGCCATTTTGTCAGCTAAC 758
| |||||||||||||||| |||||||| ||| | |||| ||||||||||||||||| ||
Sbjct 701 CACATTATGTACCATCTGGAAAGCTAGGGTCACTCAAAG-AAGCCATTTTGTCAGCTGAC 759
Query 759 CTTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAGCAATCCT 818
|||| ||||||| ||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 760 ATTTCCAAGGATCCCCATCAACACATCCAAGCAACTTTATCAAATTACAGCAGTGATCCT 819
Query 819 GAATCTGAGGCCCATCTCAAA-TCACTTTTGCCTCACATAGAGTCAGCCTTTAGCT-CAA 876
|||||||| |||| |||||| | ||||||||||| ||||| ||||| |||| || |||
Sbjct 820 GAATCTGAATCCCACCTCAAAATG-CTTTTGCCTCAGATAGAATCAGCTTTTA-CTGCAA 877
Query 877 ATAAGTCTATTAAGGAAACAATAGAAGAGCTCAAAAAGTACCAGCAAAGCACTGAGTCTT 936
||||||| |||||||||| ||||||||||| || ||||||||||| ||||||||| |||
Sbjct 878 GTAAGTCTGTTAAGGAAACTATAGAAGAGCTGAAGAAGTACCAGCAGAGCACTGAGGCTT 937
Query 937 CAGTTGTAGAATGGGCTAATGAGGCACTCAAAGGT-TTGGAAAAAGGAGCACCATTTTCT 995
|||||| ||||||||||||||| |||||| |||| ||| ||||||| ||||| ||||||
Sbjct 938 CAGTTGCAGAATGGGCTAATGAAGCACTCCAAGGCCTTG-AAAAAGGTGCACCGTTTTCT 996
Query 996 CTTTACCTAACACAAAAGTATTTCTCCAATGTTGCATG-TGCCAAGAGTAAACCCGA-AA 1053
|||||||||||||| ||||| ||||| || ||||| || ||||||| ||||| || | ||
Sbjct 997 CTTTACCTAACACATAAGTACTTCTCGAAAGTTGC-TGGTGCCAAGGGTAAAACCAACAA 1055
Query 1054 -ACGAATTAGCAACACTTAATGGCGTAATGAAAACTGAGTATCGCATTGCACTAAGATCT 1112
|| ||| | |||||||||| || || |||||||||||||| |||||||| |||||||||
Sbjct 1056 CAC-AATGA-CAACACTTAACGGTGTGATGAAAACTGAGTACCGCATTGCTCTAAGATCT 1113
Query 1113 GCCCTGCGTGGTGATTTTGCTGAAGGTGTTAGAGCAGTTTTGATTGACAAGGATCAGAAT 1172
|| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1114 GCATTGCGTAATGATTTCACTGAAGGTGTTAGAGCAGTCTTGATTGACAAGGATCAGAAC 1173
Query 1173 CCAAAATGGAACCC-GACAAGCATT-GAAGAGGTAGACGAAAACGAAGTGGAAGCTCTGT 1230
|| |||||||| || | | ||| || || |||||||| | || ||||||||| ||||| |
Sbjct 1174 CCGAAATGGAAACCAG-CGAGC-TTAGACGAGGTAGATGTAACCGAAGTGGATGCTCTCT 1231
Query 1231 TTAAACCATTAAGTCCAGAAGTGGAAGAGTTAAAAGTCTGA 1271
|||| ||||||||||| ||| |||||||| |||| || |||
Sbjct 1232 TTAAGCCATTAAGTCCTGAATTGGAAGAGCTAAACGTATGA 1272
> Ahg900061 jgi|Araly1|900061|Al_scaffold_0004_711
Length=729
Score = 268 bits (145), Expect = 6e-71
Identities = 249/296 (84%), Gaps = 20/296 (7%)
Strand=Plus/Plus
Query 397 AGGTATTTACAGCAGAGTATA-CACTGATATGTGC-A-ATTGCTGCG-TAC-AAAAAGCC 451
||||||||||||| ||||||| | |||||| ||| | ||||||| | ||| ||||| ||
Sbjct 146 AGGTATTTACAGCTGAGTATAGC-CTGATA--TGCAAGATTGCTG-GATACAAAAAAACC 201
Query 452 ATATATTTCATTGATGGATGGTATAACAATGGGATTTGGTCTTGGTCTTTCTGGACAT-G 510
|||| | || || |||||||| |||||||||||| ||||||||||||||||| |
Sbjct 202 ATATGTCTCTTTAATGGATGGCATAACAATGGGA-------TTGGTCTTTCTGGACATAG 254
Query 511 GTCGCTACCGTGTGATAACAGAGAGGACGGTTCTTGCCATGCCAGAAAATGGAATTGGCT 570
| |||||||| |||||||||||||||| ||| || || ||||||||||||||||| || |
Sbjct 255 G-CGCTACCGAGTGATAACAGAGAGGATGGTCCTCGCAATGCCAGAAAATGGAATCGGGT 313
Query 571 TGTTCCCTGATGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGG-AGGAGGATCTGTT 629
|||| || ||||| |||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 314 TGTTTCCAGATGTTGGGTTTTCATATATAGCAGCTCATAGCCCTGGCAG-AGGATATGTT 372
Query 630 GGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCGCCATCAGACGCACTGTT 685
|||||||| |||||| ||||||| | |||||| ||| | || ||||| ||||||||
Sbjct 373 GGTGCTTACCTTGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTT 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5