BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13370.1
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497045 jgi|Araly1|497045|fgenesh2_kg.9__10__AT4G13370.1 2911 0.0
> Ahg497045 jgi|Araly1|497045|fgenesh2_kg.9__10__AT4G13370.1
Length=2085
Score = 2911 bits (1576), Expect = 0.0
Identities = 1918/2080 (92%), Gaps = 35/2080 (2%)
Strand=Plus/Plus
Query 5 TTCTCAAACTCACAAAGCTCAAACAAAAATGGCTTCTCTTGCTCCCGGAATTCTCTTAAA 64
|||||||||||||||| |||| ||||||||||| || || || |||||||| ||| ||||
Sbjct 1 TTCTCAAACTCACAAACCTCACACAAAAATGGCGTCACTCGCCCCCGGAATCCTCCTAAA 60
Query 65 ACTCCTTCAATGCATGAACTCCGGCACTCGCCCCACCGGAGATCACAGATCTGCAATCTT 124
|||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct 61 ACTCCTTCAATGTATGAACTCCGGCACACGTCCCACCGGAGACCACAGATCCGCAATCTT 120
Query 125 ACAAGTCACCGGAATCGTCCCAGCTCTCGCCGGCTCCGATCTATGGCCTAACCAAGGCTT 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ACAAGTCACCGGAATCGTCCCAGCTCTCGCCGGCTCCGATCTATGGCCAAACCAAGGCTT 180
Query 185 CTACGTCCAAATCTCAGATTCTCTCAATTCCACTTACGTCTCTCTCTCCGAACGCGACAC 244
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CTACGTCCAAATCTCCGATTCTCTCAACTCCACTTACGTCTCTCTCTCCGAACGCGACAC 240
Query 245 AGATCTAATCCTCAGTAACCGTCTCCAGTTAGGTCAATTCATATACCTCGAACGCTTGGA 304
|||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||| ||
Sbjct 241 AGATCTAATCCTCACTAACCGTCTTCAGCTAGGTCAATTCATATACCTAGAACGCTTAGA 300
Query 305 ATTCGCTACTCCAGTCCCACGTGCCGCAGGAATTCGTCCCGTCGCTGGTCGTCATGCCTT 364
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 301 ATTCGCTACTCCAGTCCCACGCGCCGCCGGAATTCGTCCCGTCGCTGGTCGTCATGCATT 360
Query 365 CGTCGGAAAACCAGAGCCGTTGATTGCAAGAGTATCTAAC-GGATCTAAACGAGATTTCG 423
|||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 361 CGTCGGAACTCCAGAGCCGTTGATTGCAAGAGTATC-GCCTGGATCTAAACGTGATTTCG 419
Query 424 TTATTCAGCCAGTTTCTGATTCTGAGTACTCGTTAGATCCAATCGCTGTTTACTTGAACA 483
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 420 TTATTCAGCCAGTTTCTGACTCTGAGTACTCGTTAGATCCTATTGCTGTTTACTTGAACA 479
Query 484 ATAGAAGAATTGACGACGACGGTGACAGTGATG-T--GAAACCTAATGTGAGACAAGCGC 540
|||||||||||||||||||||| ||| |||||| | |||||||||| ||||||||||||
Sbjct 480 ATAGAAGAATTGACGACGACGGCGACGGTGATGTTACGAAACCTAATTTGAGACAAGCGC 539
Query 541 TTGCTCCGGTGAACCAAAACGAAGAGAATCGTAACCAAATTCGAAATCAGAAACCGAAA- 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 TTGCTCCGGTGAACCAAAACGAAGAGAATCGTAACCAAATTCGAAATCAGAAACCTAAAC 599
Query 600 AC--GACTCCACAGAGATTCTCGTCACCAGCATCTTCTAAACGATCAGTCTCATCAGGGA 657
| ||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct 600 AGATGACGCCACAGAGATTCTCGTCACCAGCGTCTTCTAAACGGTCAGTTTCATCGGGGA 659
Query 658 AGAAGAACT-GTTCTGGTGCTGTAGCTGTAACGGTGGAGAGAGATCCGTCACCTGTGGTT 716
||||||| | |||| ||||| || || | |||||||||||||||| ||||| | ||||
Sbjct 660 AGAAGAA-TAGTTCCGGTGC---AG-TG-A-CGGTGGAGAGAGATCCATCACCGGCGGTT 712
Query 717 TCTGGTAAAGGGAGGAGATCTGCGTCTCCGGTGCCGTCAAAATGCGTTGTGCCAAG-CTT 775
||||| |||||||||||||||||||||||||| || || ||||| |||||||| || ||
Sbjct 713 TCTGGGAAAGGGAGGAGATCTGCGTCTCCGGTTCCTTCGAAATGTGTTGTGCCGAGTCT- 771
Query 776 AGCGGCGGCGCGTGAGGAGAATAGGAAAG-TAGCTAGAGAGCCATCGATTGTTGTGCCGT 834
||||||||| ||||||||||||||||| | | ||||||||||| ||||||||||||||||
Sbjct 772 AGCGGCGGCTCGTGAGGAGAATAGGAA-GCTTGCTAGAGAGCCGTCGATTGTTGTGCCGT 830
Query 835 CAAGGTATAGACAGCCATCACCTAATGGAAGGAAGATGAATCCTTCTCCTAGTGGAAGAA 894
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CAAGGTATAGGCAACCATCACCTAATGGAAGGAAGATGAATCCTTCTCCTAGTGGAAGAA 890
Query 895 GAATGTCGATTTCACCGGGAAGAAGACTTTCTAGTGGTTTAAAGATGACTCCAATGGTTG 954
| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 891 GGATGTCGATTTCACCGGGAAGAAGGCTTTCTAGTGGTTTGAAGATGTCTCCAATGGTTG 950
Query 955 GAGATTCTTCAGGGAAGAAGAAGATGGCGGTGATTGCAGCCGGAATCTCAAAAGTTTCTG 1014
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
Sbjct 951 TAGATTCTTCAGGGAAGAAGAAGATGGCGGCGATTGCAGCCGGAATTTCCAAAGTTTCGG 1010
Query 1015 AAGCTTTAGTCGGTTCGTCTGCTAAGAATGGTAATCGGAAA-AATTGGGAGGAACCATTA 1073
|||||||||||||||||||||||||||||| |||| | ||| |||||||| |||||||||
Sbjct 1011 AAGCTTTAGTCGGTTCGTCTGCTAAGAATGTTAATAG-AAAGAATTGGGATGAACCATTA 1069
Query 1074 GCAGGTGATGGTAGTGCTAAGAATAAGCCTGATCACCAAGCAATTTTGCGTACTCAGGCT 1133
| || ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1070 GGAGCTGATGGTAGTGTTAAGAATAAGCCTAATCATCAAGCAATTTTGCGTACTCAGGCT 1129
Query 1134 GCTATGACGAGGCGTCTCAGTGATGCAAATAGGAGAAAGAGTGGTTCTTCTTCTTCAGTG 1193
|||||||||||||| |||||||||| |||||| ||||||||| |||||| || |
Sbjct 1130 GCTATGACGAGGCGACTCAGTGATGTGAATAGGCGAAAGAGTGATTCTTC------AGCG 1183
Query 1194 TGTGAAGAGAAAGCGAAGTCGTGTTCATCAGAGAGTAGTTTATTAGAAGAAGTCTCAGCC 1253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1184 TGTGAAGAGAAAGCGAAGTCGTGTTCATCAGAGAGTAGTTTACTAGAAGAAGTCTCAGT- 1242
Query 1254 T-TTGAAGGACTTGGTATCACTTATCATGAACGGAAATGGACGGATGGTAGTGTTCCACT 1312
| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 1243 TGTTGAAGGACTTGGTATCACTTATCATGAAAGGAAATGGACTGATGGTAGTGTTCCATT 1302
Query 1313 GGATAGTATCTCTGATGAACTTGCAAAACTTGGAAAGGAGGCTATGAAAAGAAGAGACTT 1372
|| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1303 GGCTAGCATCTCTGATGAACTTGCGAAACTTGGAAAGGAGGCTATGCAAAGAAGAGACTT 1362
Query 1373 TGCTGCTAAAGCTGCAGCTAGAGCATTGGAGGAAGCTAATGCCAATGAGTGCATCATAAG 1432
|||||||| ||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1363 TGCTGCTAGAGCCGCAGCTCGAGCATTGGAGGAAGCTAATGCTAATGAGTGCATCATAAG 1422
Query 1433 ATGTTTAAGTAAATTCTCCGAACTTTCTTCGGCTTCCAAGGTGGGGAATCCATTGCGAAT 1492
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1423 ATGTTTAAGTAAATTCTCGGAACTTTCTTCGGCTTCCAAGGTGGGGAATCCGTTGCGAAT 1482
Query 1493 CATCAACGAGTTTTTGAA-AATCTATGAAGATGTCATGAAATACAGTAAGATAGCTTCAG 1551
||||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1483 CATCAACGAGTTTTT-AACAATCTATGAAGATGTTATGAAATACAGTAAGATAGCCTCAG 1541
Query 1552 AAAACAGTTTCAGCTTGTCATCTGATCAACAAAACCCAATCTCTCTTTGGGTTGAAGCTG 1611
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1542 AAAACAGTTTCAGCTCGTCATCTGATCAACAAAACCCAATCGCTCTTTGGGTTGAAGCTG 1601
Query 1612 CATTAGCTACTAACCTCGAGGTGGTGTCACTAGTGAAAAGCCATGAATCACCATCGTCTC 1671
||||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||||
Sbjct 1602 CATTAGCTACTAACCTCGACGTAGTCTCACTAGTGAAAAGCCAGGAATCGCCATCGTCTC 1661
Query 1672 TGAAGAAATCAATGCCTACTCGTCTCTCTCCTAGACCTTCTAGCAAGACAGACAATATTG 1731
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TGAAGAAATCTATGCCTACTCGTCTCTCTCCTAGACCTTCTAGCAAGACAGACAATATTG 1721
Query 1732 TTGGGATGTGGACAGACTTAGATGGCTTGAAGGAAACGGCTAAGTTTGCGGTGAATCTAC 1791
||||||||||||||||| ||||||| || |||||||| ||||| || || ||||| ||||
Sbjct 1722 TTGGGATGTGGACAGACATAGATGGATTAAAGGAAACAGCTAAATTCGCAGTGAACCTAC 1781
Query 1792 AATCTGAAATGCAAGTGTGGTTCATTGAGTTCGTGGAAGAATCGTTAGACAACAAAAACG 1851
|||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1782 AATCCGAAATGCAAATGTGGTTCATTGGGTTCGTGGAAGAATCATTAGACAACAAAAACG 1841
Query 1852 CAGCAAAACGATCTTTAGACGGTAGTTCCATAGCTGCAGTTTTGTCTCAGCTGAAACAAG 1911
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1842 CAGCAAAACGATCTTTAGACGGTAGTTCCATAGCTGCAGTTCTGTCTCAGCTGAAACAAG 1901
Query 1912 TTAACGAGTGGCTGGACCGGGTCTCGTCGAACCAAGAAAACAAGATCACAACAATGGACA 1971
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1902 TTAACGAGTGGCTGGACCGGGTCTTGTCGAACCAAGAAAACCAGATCACAACAATGGACA 1961
Query 1972 AGATCGAGCGGCTGAAACGCAAGATCTATGGATTCGTTATCCATCACGTCGGATCTACAT 2031
|||||||||| || |||||||| ||||| ||||||||||||||||| || |||||||| |
Sbjct 1962 AGATCGAGCGACTAAAACGCAAAATCTACGGATTCGTTATCCATCATGTTGGATCTACTT 2021
Query 2032 ATGACAACTCTGCTTCTTCTT---GATTTCATCttttttt 2068
||||||||||||||||||||| ||||||||||||||||
Sbjct 2022 ATGACAACTCTGCTTCTTCTTCTTGATTTCATCTTTTTTT 2061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81932116995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5