BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13380.1
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332984 jgi|Araly1|332984|fgenesh1_pm.C_scaffold_9000012 566 8e-161
Ahg907679 jgi|Araly1|907679|Al_scaffold_0002_760 78.7 4e-14
> Ahg332984 jgi|Araly1|332984|fgenesh1_pm.C_scaffold_9000012
Length=582
Score = 566 bits (306), Expect = 8e-161
Identities = 510/603 (85%), Gaps = 36/603 (6%)
Strand=Plus/Plus
Query 1 ATGGTTACTGGTAATTTTAATTTGGaaaaattattgaaaaatctcaagaaaaaaactggt 60
||||| ||||||||||| ||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct 1 ATGGTCACTGGTAATTTCAATTTAGAAAAGTTATTGAAAACTCTCAAGAAAAAAACCGGT 60
Query 61 aaaaaGGCAGAAATCTTGACGATGAATGAGAAAGTTGAGAAAGAAGATGTTGTTCAAAAT 120
||||||||||||||||| | |||||||||||||| ||| | ||| | | |||||
Sbjct 61 AAAAAGGCAGAAATCTTAATGATGAATGAGAAAGCTGA-TATGAA-A----G---AAAAT 111
Query 121 GAAGCTAATGAACAAGAGACAGTTACAAAGAAGAATGAAGAAGGTGATATAGTCGACA-A 179
| |||||||||||||| ||||| |||||||||||||||||||||||||| | | |
Sbjct 112 ---G---ATGAACAAGAGACATTTACAGAGAAGAATGAAGAAGGTGATATAGTCCA-AGA 164
Query 180 AAAAGATGAGACTCCTGAAGTAGAAGAAAAAATTGACAAACCTGAAACAAGTACAAGAAA 239
|||||| | | |||||||||||||||||| ||||| | ||||||| ||||||||| |||
Sbjct 165 AAAAGACAAAAATCCTGAAGTAGAAGAAAACATTGATACACCTGAAGCAAGTACAACAAA 224
Query 240 ACTTGAAATACATATAGCATTTCTA-AGTGAGAAGTATGAGGCAGACATCGGAAAAGTTA 298
| | ||||| ||||| ||||||||| | ||||||||| |||| |||||||||||||||||
Sbjct 225 AGTCGAAATTCATATCGCATTTCTATA-TGAGAAGTACGAGGAAGACATCGGAAAAGTTA 283
Query 299 TTTCTAAATTCGAAGGGGTCAAAACATGTAAGGTCGATGTAGAAAAC-AAAAAAGTTGTC 357
||||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||
Sbjct 284 TTTCTAAATTCGAAGGGGTCAAAACATGTGTGGTCGACATAGAAAACCAAAAAA-TTGTA 342
Query 358 ATCACTGGCGATTTTGATGAAGAgaaattgt-ggaaagaacttgaggaaaaa-atgcgta 415
|| |||||||| ||||||||||||||||| | ||||| ||||| || ||||| ||| |||
Sbjct 343 ATAACTGGCGACTTTGATGAAGAGAAATTATTGGAAA-AACTTAAG-AAAAAGATGTGTA 400
Query 416 aaaggatagtcaaaatggaaaaggaaaa-aaaGGACGATGAA-CC----TA-T-A-AC-G 465
|||||||| |||| |||||||| |||| |||||| || ||| || || | | | |
Sbjct 401 AAAGGATAAACAAAGTGGAAAAG-AAAAGAAAGGAGGAAGAAGCCAAAATAGTTATAGAG 459
Query 466 AAAGATGAAGAAAATGAAATTGATAGAGGTGTTTATATGAACCCTAGTAGTGATGATGAG 525
||||||||||||| |||||| |||||||||||||||||| |||| | |||||||||||||
Sbjct 460 AAAGATGAAGAAATTGAAATGGATAGAGGTGTTTATATGTACCCAAATAGTGATGATGAG 519
Query 526 AAAGAAATGGCTAGATGGATGATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTTCG 585
||||| |||| | || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 520 AAAGAGGTGGCCAAATATATGATGTTTAGTGATGAAAATCCTAATGCATGTTCGATTTCG 579
Query 586 TAA 588
|||
Sbjct 580 TAA 582
> Ahg907679 jgi|Araly1|907679|Al_scaffold_0002_760
Length=732
Score = 78.7 bits (42), Expect = 4e-14
Identities = 99/125 (79%), Gaps = 9/125 (7%)
Strand=Plus/Plus
Query 470 ATGAAGAAAAT-GA-AATTGATAGAGGTGTTTATATGAACCCTAGTAGTGATGATGAGAA 527
|||||| |||| || || |||||| ||| ||| | ||||| | || |||| |||| ||
Sbjct 611 ATGAAG-AAATCGACAA-GGATAGAAATGTATATCTCAACCCAATTACTGATTATGA-AA 667
Query 528 A-GAAATGGCT--AGA-TGGATGATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTT 583
| || |||||| | | | | ||||| |||||||||||||||||||||||||||||||
Sbjct 668 AGGAGATGGCTAAACATTATAACATGTTCAGTGATGAAAATCCTAATGCATGTTCTATTT 727
Query 584 CGTAA 588
|||||
Sbjct 728 CGTAA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21519752196
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5