BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13395.1 Length=427 Score E Sequences producing significant alignments: (Bits) Value Ahg332982 jgi|Araly1|332982|fgenesh1_pm.C_scaffold_9000010 206 1e-52 > Ahg332982 jgi|Araly1|332982|fgenesh1_pm.C_scaffold_9000010 Length=156 Score = 206 bits (111), Expect = 1e-52 Identities = 141/156 (90%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 76 ATGTCCAATTCTTCTCTTCCAACTAAACCGAACCGGAAAACCAGGTTCGGAGATCGGTGT 135 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGTCCAATCCTTCTCTTCCAACTAAACCGAACCGGAAAACCAGCTTCGGAGATCGGTGT 60 Query 136 TTACTGATGGCCAAACAGCAACGAACCCGACTTTACATACTTCGACGATGTGTCTCCATG 195 ||||| |||||||||||||||||||| || || || || || || || || ||||| ||| Sbjct 61 TTACTAATGGCCAAACAGCAACGAACTCGGCTCTATATCCTACGGCGCTGCGTCTCAATG 120 Query 196 CTGCTTTGCTGGCACGACCACTCTATTTCTGATTAG 231 || ||||||||||| ||||||||||||||||||||| Sbjct 121 CTACTTTGCTGGCATGACCACTCTATTTCTGATTAG 156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15376702367 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5