BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13395.1

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332982 jgi|Araly1|332982|fgenesh1_pm.C_scaffold_9000010           206    1e-52


> Ahg332982 jgi|Araly1|332982|fgenesh1_pm.C_scaffold_9000010
Length=156

 Score =  206 bits (111),  Expect = 1e-52
 Identities = 141/156 (90%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  76   ATGTCCAATTCTTCTCTTCCAACTAAACCGAACCGGAAAACCAGGTTCGGAGATCGGTGT  135
            ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGTCCAATCCTTCTCTTCCAACTAAACCGAACCGGAAAACCAGCTTCGGAGATCGGTGT  60

Query  136  TTACTGATGGCCAAACAGCAACGAACCCGACTTTACATACTTCGACGATGTGTCTCCATG  195
            ||||| |||||||||||||||||||| || || || || || || || || ||||| |||
Sbjct  61   TTACTAATGGCCAAACAGCAACGAACTCGGCTCTATATCCTACGGCGCTGCGTCTCAATG  120

Query  196  CTGCTTTGCTGGCACGACCACTCTATTTCTGATTAG  231
            || ||||||||||| |||||||||||||||||||||
Sbjct  121  CTACTTTGCTGGCATGACCACTCTATTTCTGATTAG  156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15376702367


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5