BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13400.1
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915049 jgi|Araly1|915049|Al_scaffold_0009_18 1443 0.0
> Ahg915049 jgi|Araly1|915049|Al_scaffold_0009_18
Length=1116
Score = 1443 bits (781), Expect = 0.0
Identities = 847/880 (96%), Gaps = 0/880 (0%)
Strand=Plus/Plus
Query 136 ATGTCTCTCTCGTCGGACTCCACCGTTCCTACTGTTTCCACGGTCACCATATCCTACTCA 195
|||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 1 ATGTCTCTCTCGCCGGAATCCACCGTTCCTACGGTTTCCACCGTCACCATATCCTACCCA 60
Query 196 GAGCTCAAGGAGAGCAACATAGATTTGTCTGCAAGGATTGAAGAAGGATTTGGACCTAAT 255
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GAGCTCAAGGAGAGCAACATAGATTTGTCTGCGAGGATTGAAGAAGGATTTGGACCTAAT 120
Query 256 GGACTTGGAATCCTCTCTGTTAAAGATGTTCCTGGATATTCTGCTTTAAGACAGAATCTA 315
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GGACTTGGAATTCTCTCTGTTAAAGATGTTCCTGGATATTCTGCTTTACGACAGAATCTA 180
Query 316 CTTCAGCTTGCACCTAGGTTAGCTGGTCTTCCTGAAGAGGTGAAGAGGGAGCTTGAAGAT 375
|||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 181 CTTCGGCTTGCACCTAGGTTAGCTGGCCTTCCTGAAGAGGTGAAGAGAGAGCTTGAAGAT 240
Query 376 CCTCATAGTAGGTATAATTTTGGTTGGAGTCATGGCAAGGAGAAACTTGAATCCGGGAAG 435
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTCATAGTAGGTATAACTTTGGTTGGAGTCATGGCAAGGAGAAACTTGAATCCGGGAAG 300
Query 436 CTTGACATGCTGAAGGGTTCTTACTATGCTAATCCTCTACAAGATGTACCTACGAGTAAT 495
||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CTTGATATGTTGAAGGGTTCTTACTATGCTAATCCTCTACAAGATGTACCGACGAGTAAT 360
Query 496 TCATATGAAATACAGCGGTATCCATCGTATTGTGGATCAAATATATGGCCAAGGAATTCT 555
|||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct 361 TCATATGAAATACAGCGGTATCCATCATATTGTGGATCAAACATATGGCCAAAGAATTCT 420
Query 556 TTACCGGAACTTGAAGGAGCTTTCAAAGCTCTTGGTAAACTGATGTTCGAAGTTGGGCTA 615
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTACCGGAACTTGAAGGAGGTTTCAAAGCTCTTGGTAAACTGATGTTCGAAGTTGGGCTG 480
Query 616 ATGGTAGCTTACCACTGTGATCAATATGTGTCAAAGGGTATAAAACAACATGAAAAGCAA 675
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 ATGGTAGCTTACCACTGTGATCAATATGTGTCGAAGGGTATAAAACAACATGAAAAGCAA 540
Query 676 AATCTTGAAAAGATACTACTTGGCTCTCGGTGTCACAAAGGACGGCTGCTTTATTATTTC 735
||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 541 AATCTTGAAAAGATACTACGTGACTCTCGGTGTCACAAAGGACGTCTGCTTTATTATTTT 600
Query 736 CCTGCACAAGAGAGCTCTACGCATGACAACGATTCCATCTCATCTTGGTGTGGATGGCAT 795
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCTGCTCAGGATAGCTCTACGCATGACAACGATTCCATCTCATCTTGGTGTGGATGGCAT 660
Query 796 ACAGACCATGGTTCACTCACAGGTCTTACTCGAGCAATATTTTCTAGAGATTCAGTTGAA 855
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 ACAGACCATGGTTCACTCACAGGTCTTACTCGTGCAATATTTTCTAGAGATTCAGTTGAA 720
Query 856 GTACCTTGCCCAGATCCTGCTTCTGGCTTATACATACAAACACGATCAGGTCAGATCGTT 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTACCTTGCCCAGATCCTGCTTCTGGCTTATACATACAAACACGATCAGGTCAGATCGTT 780
Query 916 AAGGTTGTGTATGGGGAAGATGAAATAGCATACCAAATAGGCGAGACAACATCAATTCTG 975
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 781 AAGGTTGTGTATGGGGAAGATGAAATAGCATACCAAATCGGCGAGACAACAGCAATTCTG 840
Query 976 TCTAGTGGTTATCTTTGTGCTACACCTCATTGTGTTCGGG 1015
|| |||||||||||||||||||||||||||||||||||||
Sbjct 841 TCAAGTGGTTATCTTTGTGCTACACCTCATTGTGTTCGGG 880
Score = 305 bits (165), Expect = 4e-82
Identities = 183/192 (95%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 1018 CCACAAGGAGAAGAGGCGCGTGGTCTAGAGCGATCGACATTCGCGTTGTTCATGCAACCT 1077
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 925 CCACAAGGAGAGGAGGCTCGTGGTCTAGAGCGATCGACATTCGCATTGTTCATGCAACCT 984
Query 1078 GACTGGGACCAGAAGCTTACATTCCCAAAAGAAGTTACAATACATGAAGAGTTATGTCTC 1137
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 985 GATTGGGATCAGAAGCTTACATTCCCAAAAGAAGTGACAATACATGAAGAGTTATCTCTC 1044
Query 1138 TCTGATGAAGTCTTGACGTTTGGAGAATATACAGAGAAACTGCTCAACAAATACTATGAT 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1045 TCTGATGAAGTCTTGACGTTTGGAGAATATACAGAGAAACTGCTCAACAAATACTACGAT 1104
Query 1198 ACAAAACCTTAG 1209
|||||||||||
Sbjct 1105 TCAAAACCTTAG 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50131635855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5