BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13410.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915048 jgi|Araly1|915048|Al_scaffold_0009_17 1441 0.0
Ahg313253 jgi|Araly1|313253|fgenesh1_pm.C_scaffold_1002033 1336 0.0
Ahg488470 jgi|Araly1|488470|fgenesh2_kg.6__1604__AT5G16190.1 1099 0.0
Ahg905719 jgi|Araly1|905719|Al_scaffold_0003_2847 621 5e-177
> Ahg915048 jgi|Araly1|915048|Al_scaffold_0009_17
Length=1569
Score = 1441 bits (780), Expect = 0.0
Identities = 912/976 (93%), Gaps = 8/976 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTTGCTTCTGAAGCCTCTCCTTTCTCTACACGATTTATCTCTTAACCTCCTCTCG 60
|||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ATGTTTCTGCTTTTGAAGCCTCTCCTTTCTCTACAAGATTTATCTCTTAACCTCATCTCG 60
Query 61 GTAATGTTCCATGGAGAAACTCTTAAAGCATCCGTGGATGGTGTGGGGATAAACAT-GAG 119
||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||
Sbjct 61 GTAATGTTCCATGGAGAAATTCTTAAAGCATCCGTGGATAGTGTGGGGATAAGCATGGA- 119
Query 120 CACTATGTGGAGAGAAACAAGGAATGTATTCATAGTTCCATTGTTCAAGTGTATAGTGGT 179
||||||||||||||||||||||| |||| ||||||||||| ||||||||||| | ||||
Sbjct 120 CACTATGTGGAGAGAAACAAGGAGTGTACTCATAGTTCCAGTGTTCAAGTGTGTGGTGGC 179
Query 180 TATGTGTTTGATCATCTCGCTCTTAG-TTTTCGTTGAGAGTGTTTACATGAACCTTGTAG 238
|||||||||| |||| || | || | ||||| | |||||||||||||||||||||||||
Sbjct 180 TATGTGTTTGGTCATATCATTATT-GATTTTCATGGAGAGTGTTTACATGAACCTTGTAG 238
Query 239 TACTCTATGTCAAGTTGTTTAACCGAAAACCAGAGAAAGTCTACAAATGGGAGGCAATGC 298
||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 239 TACTCTACGTCAAGTTGTTTAACCGAAAACCTGAGAAGGTCTATAAATGGGAGGCAATGC 298
Query 299 AGGAGGATATGGAGCTTGGTCATCAAAATTATCCGATGGTCCTTGTTCAAATCCCAATGT 358
|||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 299 AGGAAGATATGGAGCTTGGTCATCAAAACTATCCGATGGTCCTTGTCCAAATTCCAATGT 358
Query 359 ACAACGAACGAGAGGTCTTTGAATTATCTATAGGTGCTGCGTGCAGACTAACATGGCCAT 418
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 359 ACAACGAACGAGAGGTCTTCGAATTATCTATAGGTGCTGCGTGCAGACTAACGTGGCCAT 418
Query 419 CGGACCGTCTAATTGTTCAAGTTTTAGATGATTCCACCGATCCAGCAATCATGGAACTGG 478
||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 419 CGGACCGCCTAATCGTTCAAGTTTTAGATGATTCTACCGATCCAGCCATCATGGAACTGG 478
Query 479 TGAGCATGGAATGTACAAAATGGGCATCAAAAGACATAAATATAAATTATGAGAGGCGAG 538
|||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct 479 TGAGCATGGAATGTGCAAAATGGGCATCAAAAGGCATAAACATAAAGTATGAGAGGCGAG 538
Query 539 AGAACAGAAATGGCTACAAGGCTGGAGCTCTTAAGCACGGCATGAGGCACAGTTACGTCA 598
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 ACAACAGAAATGGCTACAAGGCTGGAGCTCTTAAGCACGGCATGAGGCACAGCTACGTCA 598
Query 599 AGCAGTGCCAA-TATCTT-GCCATCTTTGATGCTGATTTCCAGCCCGAGCCCGATTACCT 656
|||| || ||| ||| || |||||||||||||||||||||||| ||||| | || |||||
Sbjct 599 AGCACTG-CAACTAT-TTGGCCATCTTTGATGCTGATTTCCAGTCCGAGTCAGACTACCT 656
Query 657 CCAACGCGCTATCCCCTTTCTTATCCACAACCCTGAGGTCGCTCTTGTCCAAGCTCGATG 716
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 657 CCAACGCGCTATCCCCTTTCTTATCCACAACCCTGAGGTCGCTCTAGTTCAAGCTCGATG 716
Query 717 GAGATTTGTAAACGCTAACACATGCTTAATGACGAGGATGCAAGAGATGTCTCTGAACTA 776
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 717 GAGATTTGTGAACGCGAACACATGCTTAATGACGAGGATCCAAGAGATGTCTCTCAACTA 776
Query 777 CCATTTCATGGCAGAGCAACAATCTGGATCCACAAGACATGCTTTCTTTGGCTTTAATGG 836
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 777 CCATTTCATGGCAGAGCAACAATCTGGATCCACACGACATGATTTCTTTGGCTTTAATGG 836
Query 837 AACTGCGGGAGTATGGAGAATGGTGGCGATGGAAGAAGCTGGAGGATGGAAGGACCGGAC 896
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 AACTGCGGGAGTGTGGAGAATGGCGGCGATGGAAGAAGCTGGAGGATGGAAGGACCGGAC 896
Query 897 GACGGTAGAGGACATGGACTTGGCCGTTCGTGTTGGTCTTCTCGGTTGGAAATTTATCTT 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GACGGTGGAGGACATGGACTTGGCCGTTCGTGTTGGTCTTCTCGGTTGGAAATTTATCTT 956
Query 957 CGTCAATGACCTCGAG 972
||||||||||||||||
Sbjct 957 CGTCAATGACCTCGAG 972
Score = 898 bits (486), Expect = 0.0
Identities = 561/597 (94%), Gaps = 6/597 (1%)
Strand=Plus/Plus
Query 1021 CATCGGTGGTCTTGTGGTCCAGCCAATCTTATT-AGGAAAATGACGATGGAAATTATTCA 1079
||||||||||| |||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 976 CATCGGTGGTCATGTGGTCCAGCCAATCTT-TTCCGGAAAATGATGATGGAAATTATTCA 1034
Query 1080 CAATAAGAGAGTGAAGATTTGGAAGAAGTTTTACGTGATCTACAGCTTCTTTTTCCTACG 1139
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1035 CAATAAGAGAGTGAAGATTTGGAAGAAGTTTTACGTGATCTACAGCTTTTTTTTCCTACG 1094
Query 1140 GAAGATCGTAGTCCACTTCTTCACTTAT-TTCTTTTACTGTGTCATTCTTCCTACAAGTG 1198
||||||| |||||||||||||||||| | ||||| || |||||| | |||||||||||||
Sbjct 1095 GAAGATCATAGTCCACTTCTTCACTT-TCTTCTTCTATTGTGTCGTCCTTCCTACAAGTG 1153
Query 1199 TCTTCCTTCCCGAAGT-AAATATACCGAACTGGTCAACTATATATGTTCCTTCTGTCATC 1257
|||||||||||||||| ||| || ||||||||||| |||||||| ||||||||| |||||
Sbjct 1154 TCTTCCTTCCCGAAGTCAAA-ATTCCGAACTGGTCGACTATATACGTTCCTTCTATCATC 1212
Query 1258 ACCCTCTTGAGTGCCATTGCCACTCCAAGATCATTCTACCTCGTGATTTTTTGGGTCTTA 1317
|||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1213 ACCCTCTTCAGTGCCATCGCCACTCCAAGATCATTCTACCTCGTGGGTTTTTGGGTCTTA 1272
Query 1318 TTCGAAAATGTAATGGCTATGCACCGGACCAAGGGAACTTTGATTGGCTTATTTGAAGGA 1377
|||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1273 TTCGAAAATGTAATGGATATGCATCGGACCAAAGGAACTTTGATTGGCTTATTTGAAGGA 1332
Query 1378 GGAAGAGTCAATGAATGGGTTGTCACAGAGAAATTAGGAGATACTCTTAACACTAAGCTA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GGAAGAGTCAATGAATGGGTTGTCACAGAGAAATTAGGAGATACTCTTAACACTAAGCTA 1392
Query 1438 CTTCCCCAGAATGGACGACTTCCGAAAAGAGTAAATTTGAAGGAGATGATGATGGGTATA 1497
||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1393 CTTCCCCGGAATGGGCGACTTCTGAAAAGAGTAAATTTGAAGGAGATGATGATGGGTATA 1452
Query 1498 TACATATTATGTTGTGCTTGCTACGACTTTGCATTTGGAAATGCATTTTTATATTTGTAT 1557
||||||||||||||||| |||||||||||||| ||||| || ||||||||||||| |||
Sbjct 1453 TACATATTATGTTGTGCCTGCTACGACTTTGCCTTTGGGAACACATTTTTATATTTATAT 1512
Query 1558 CTCTTCATGCAAGCCACTGCTTTTCTCATCTCCGGAGTTGGCTTTGTTGGAACTTAA 1614
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1513 CTCTTCATGCAAGCCACTGCTTTTCTCATCTCCGGAATTGGCTTTGTTGGAACTTAA 1569
> Ahg313253 jgi|Araly1|313253|fgenesh1_pm.C_scaffold_1002033
Length=1659
Score = 1336 bits (723), Expect = 0.0
Identities = 1244/1493 (83%), Gaps = 46/1493 (3%)
Strand=Plus/Plus
Query 151 ATAGTTCCATTGTTCAAGTGTATAGTGGTTATGTGTTTGATCATCTCGCTCTTAGTTTTC 210
|||||||| || ||||||||| | |||| | | |||||||| ||||| ||||||||||||
Sbjct 184 ATAGTTCCCTTATTCAAGTGTTTGGTGGCTCTTTGTTTGATGATCTCCCTCTTAGTTTTC 243
Query 211 GTTGAGAGTGTTTACATGAACCTTGTAGTACTCTATGTCAAGTTGTTTAACCGAAAACCA 270
| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATAGAGGGTATATACATGAACCTTGTAGTACTCTATGTCAAGTTGTTTAACCGAAAACCG 303
Query 271 GAGAAAGTCTACAAATGGGAGGCAATGCAGGAGGATATGGAGCTTGGTCATCAAAATTAT 330
|| ||| |||||||||||||| | |||| |||||| || ||||| || ||| ||| ||
Sbjct 304 GAAAAAATCTACAAATGGGAGCCGATGCCGGAGGACATTGAGCTCGGACATGAAACCTAC 363
Query 331 CCGATGGTCCTTGTTCAAATCCCAATGTACAACGAACGAGAGGTCTTTGAATTATCTATA 390
|| ||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||
Sbjct 364 CCCATGGTCCTTGTTCAAATTCCAATGTACAACGAAAAAGAGGTCCTTCAATTATCTATA 423
Query 391 GGTGCTGCGTGCAGACTAA-CATGGCCATCGGACCGTCTAATTGTTCAAGTTTTAGATGA 449
||||||| || ||||||| | ||||||| ||| || ||||||||||||||| |||||||
Sbjct 424 GGTGCTGTATGTAGACTAATC-TGGCCATTGGATCGCCTAATTGTTCAAGTTCTAGATGA 482
Query 450 TTCCACCGATCCAGCAATCATGGAACTGGTGAGCATGGAATGTACAAAATGGGCAT-CAA 508
|||||| |||| | | || | || ||||||| || || ||| ||||||||| | |||
Sbjct 483 TTCCACTGATCAAACCATGAAGGGGCTGGTGAACACAGAGTGTGCAAAATGGGAAAGCAA 542
Query 509 AAGACATAAATATAAATTATGAGAGGCGAGAGAACAGAAATGGCTACAAGGCTGGAGCTC 568
| | | |||||||||| | ||||||| |||| |||||||||||||| || || |||||||
Sbjct 543 AGG-CGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAAAGCCGGAGCTC 601
Query 569 TTAAGCACGGCATGAGGCACAGTTACGTCAAGC-AGTGCCAA-TATCTTGCCATCTTTGA 626
|||| || ||||||| ||||| |||||| |||| | ||| || ||| ||| |||||||||
Sbjct 602 TTAAACAAGGCATGAAGCACAATTACGTGAAGCTA-TGC-AACTATGTTGTCATCTTTGA 659
Query 627 TGCTGA-TTTCCAGCCCGAGCCCGATTACCTCCAACGCGCTATCCCCTTTCTTATCCACA 685
|| || |||| | || ||||| ||||||||||||||| || |||| || || |||| |
Sbjct 660 CGCAGACTTTCAA-CCGGAGCCTGATTACCTCCAACGCTCTGTCCCATTCCTCGTCCATA 718
Query 686 ACCCTGAGGTCGCTCTTGTCCAAGCTCGATGGAGATTTGTAAACGCTAACACA-TGCTTA 744
|||| |||||||||||||| ||||| || |||||||| | ||||| |||| | |||||
Sbjct 719 ACCCCGAGGTCGCTCTTGTTCAAGCCCGTTGGAGATTCATGAACGCAAACA-AGTGCTTG 777
Query 745 ATGACGAGGATGCAAGAGATGTCTCTGAACTACCATTTCATGGCAGAGCAACAATCTGGA 804
||||||||||||||||||||||| || |||||||| ||||||||||| ||| ||||||||
Sbjct 778 ATGACGAGGATGCAAGAGATGTCCCTCAACTACCACTTCATGGCAGAACAAGAATCTGGA 837
Query 805 TCCACAAGACATGCTTTCTTTGGCTTTAATGGAACTGCGGGAGTATGGAGAATGGTGGCG 864
||||| |||||||| |||||| |||| |||||||||||||| ||||||||||||| |||
Sbjct 838 TCCACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGCCGCG 897
Query 865 ATGGAAGAAGCTGGAGGATGGAAGGACCGGACGACGGTAGAGGACATGGACTTGGCCGTT 924
||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||
Sbjct 898 ATGGAAGAAGCTGGAGGATGGCATGACCGGACCACTGTAGAGGACATGGACTTGGCCGTT 957
Query 925 CGTGTTGGTCTTCTCGGTTGGAAATTTATCTT-CGTCAATGACCTCGA-GGTTAAAAGCG 982
|||| |||||||||||| ||||||||| |||| | ||||||||||| | ||| |||||||
Sbjct 958 CGTGCTGGTCTTCTCGGCTGGAAATTTGTCTTTC-TCAATGACCTC-ACGGTGAAAAGCG 1015
Query 983 AGCTACCAAGCCAATTTAAGGCCTTTC-GATTCCAACAGCATCGGTGGTCTTGTGGTCCA 1041
| |||||||| ||||||||||||| | ||||||| || ||||| |||||||||||||||
Sbjct 1016 AATTACCAAGCAAATTTAAGGCCTT-CAGATTCCAGCAACATCGATGGTCTTGTGGTCCA 1074
Query 1042 GCCAATCTTATT-AGGAAAATGACGATGGAAATTATTCACAATAAGAGAGTGAAGATTTG 1100
|| ||||| || |||||||||| ||||| ||||||| |||||||||||||| ||||||
Sbjct 1075 GCTAATCTC-TTCAGGAAAATGATTATGGAGATTATTCGCAATAAGAGAGTGACGATTTG 1133
Query 1101 GAAGAAGTTTTACGTGATCTACAGCTTCTTTTTCCTACGGAAGATCGTAGTCCACTTCTT 1160
||||||||| || || ||||||||||||||||| ||||||||||| | ||||||| |||
Sbjct 1134 GAAGAAGTTGTATTTGGTCTACAGCTTCTTTTTCTTACGGAAGATCATCGTCCACTGCTT 1193
Query 1161 CACTTATTTCTTT-TACTGTGTCATTCTTCCTACAAGTGTCTTCCTTCCC-GAAGTAAAT 1218
||| | |||| || ||||| || ||||||||||||||||||||| ||||| ||||| ||
Sbjct 1194 CACGT-TTTCGTTCTACTGCGTTATTCTTCCTACAAGTGTCTTC-TTCCCCGAAGTCAAC 1251
Query 1219 ATACCGAACT-GGTCAACTATATATGTTCCTTCTGTCATCACCCTCTTG-AGT-GCCATT 1275
|| || | || |||||||| | || |||| ||| | ||||| |||| | | | | ||||
Sbjct 1252 ATTCC-AGCTTGGTCAACTTTTTACATTCCGTCTATGATCACTCTCT-GCA-TCGTCATT 1308
Query 1276 GCCACTCCAAGATCATTCTACCTCGTGATTTTTTGGGTCTTATTCGAAAATGTAATGGCT 1335
|| || ||||||||||||||| ||||||| |||||| |||| || ||||| |||||| ||
Sbjct 1309 GCGACACCAAGATCATTCTACTTCGTGATATTTTGGATCTTGTTTGAAAACGTAATGTCT 1368
Query 1336 ATGCACCGGACCAAGGGAACTTTGATTGGCTTATTTGAAGGAGGAAGAGTCAATGAATGG 1395
||||||||||| ||||||||||| || ||| || | ||| | |||||| || ||||||
Sbjct 1369 ATGCACCGGACGAAGGGAACTTTCATCGGCATACTCGAAAAACAAAGAGTTAACGAATGG 1428
Query 1396 GTTGTCACAGAGAAATTAGGAGATACTCTTAACACTAAGCTACTTCCCCAGAATGGA--- 1452
|||||||| ||||||||||||||| ||||||| |||||||||||||| | || ||||
Sbjct 1429 GTTGTCACTGAGAAATTAGGAGATGCTCTTAAGACTAAGCTACTTCCTCGGATTGGAAAA 1488
Query 1453 C---G-A-C---TTCC--GAAAAGAGTAAATTTGAAGGAGATGATGATGGGTATATACAT 1502
| | | | || | |||| ||||||| | |||||| | ||| |||| ||||||||
Sbjct 1489 CCTAGTAACGGGTTTCTTGAAA-GAGTAAACTCCAAGGAGGTAATGGTGGGGATATACAT 1547
Query 1503 ATTATGTTGTGCTTGCTACG-ACTTTGCATTTGGAAATGCATTTTTATATTTGTATCTCT 1561
|| |||||||||||||| | ||||| | ||||| || |||| |||||| | |||||||
Sbjct 1548 CTTGTGTTGTGCTTGCTATGGACTTTTC-TTTGGGAACACATTGTTATATCTCTATCTCT 1606
Query 1562 TCATGCAAGCCACTGCTTTTCTCATCTCCGGAGTTGGCTTTGTTGGAACTTAA 1614
|||||||||| |||||||||| | ||||||||||||||||| || ||||||
Sbjct 1607 TCATGCAAGCGGTTGCTTTTCTCGTATCCGGAGTTGGCTTTGTCGGCACTTAA 1659
> Ahg488470 jgi|Araly1|488470|fgenesh2_kg.6__1604__AT5G16190.1
Length=1332
Score = 1099 bits (595), Expect = 0.0
Identities = 1109/1352 (82%), Gaps = 56/1352 (4%)
Strand=Plus/Plus
Query 295 ATGCAGGAGGATATGGAGCTTGGTCATCAAAA-TTATCCGATGGTCCTTGTTCAAATCCC 353
||||| ||||| |||||||| || ||||||| || ||| ||||| ||||| ||||||||
Sbjct 1 ATGCAAGAGGACATGGAGCTCGGAAATCAAAACTT-TCCCATGGTTCTTGTCCAAATCCC 59
Query 354 AATGTACAACGAACGAGAGGTCTTTGAATTATCTATAGGTGCTGCGTGCAGACTAACATG 413
||||||||| ||||||||||| ||| | ||||| || |||||||| |||||||| | |||
Sbjct 60 AATGTACAATGAACGAGAGGTGTTTCAGTTATCCATTGGTGCTGCTTGCAGACTCATATG 119
Query 414 GCCATCGGACCGTCTAATTGTTCAAGTTTTAGATGATTCCACCGAT-CCAGCAATCATGG 472
||||| ||| || ||||| ||||||||||||||||||||||| ||| ||| | |||||||
Sbjct 120 GCCATTGGAGCGACTAATCGTTCAAGTTTTAGATGATTCCACTGATCCCA-CCATCATGG 178
Query 473 AACTGGTGAGCATGGAATGTACAAAATGGGCATCAAAAGACATAAATATAAATTATGAGA 532
|| |||||| ||| || ||| |||||||||| | |||| ||| || ||||| | |||||
Sbjct 179 AAATGGTGAACATAGAGTGTGGAAAATGGGCAACCAAAGGCATTAACATAAAATGTGAGA 238
Query 533 GGCGAGAGAACAGAAATGGCTACAAGGCTGGAGCTCTTAAGCACGGCATGAGGCACAGTT 592
|| |||| || ||||||||||| ||||||||||||||||| || || |||||||| ||||
Sbjct 239 GGAGAGATAATAGAAATGGCTATAAGGCTGGAGCTCTTAAACAAGGTATGAGGCATAGTT 298
Query 593 ACGTC-AAGCAGTGCCA-ATATC-TTGCCATCTTTGATGCTGATTTCCAGCCCGAGCCCG 649
||||| || || || || || | |||| ||||| ||||| || |||||||| ||||| |
Sbjct 299 ACGTCAAAACA-TG-CACCTA-CATTGCAATCTTCGATGCCGACTTCCAGCCAGAGCCTG 355
Query 650 ATTACCTCCAACGCG-CTATCCCCTTTCTTATCCACAA-CCCTGAGGTCGCTCTTGTCCA 707
| ||||| ||||| | || | || |||||||||||||| || ||| |||||||||| ||
Sbjct 356 ACTACCTACAACG-GACTGTTCCATTTCTTATCCACAATTCC-GAGCTCGCTCTTGTTCA 413
Query 708 AGCTCGATGGAGATTTGTAAACGCTAACACA-TGCTTAATGACGAGGATGCAAGAGATGT 766
||||||||||| |||||| || || || | | ||||| ||||| |||||||| |||||||
Sbjct 414 AGCTCGATGGAAATTTGTGAATGCGAAGA-AGTGCTTGATGACTAGGATGCAGGAGATGT 472
Query 767 CTCTGAACTACCATTTCATGGCAGAGCAACAATCTGGATCCACAAGACATGCTTTCTTTG 826
| || || |||||||||| |||||||||| |||| |||||||| |||||||| |||||||
Sbjct 473 CCCTCAATTACCATTTCACGGCAGAGCAAGAATCCGGATCCACTAGACATGCCTTCTTTG 532
Query 827 GCTTTAATGGAACTGCGGGAGTATGGAGAATGGTGGCGATGGAAGAAGCTGGAGGATGGA 886
|||| ||||| ||||| || ||||||||| ||| ||| ||||||||||| || || ||||
Sbjct 533 GCTTCAATGGGACTGCTGGTGTATGGAGACTGGCGGCAATGGAAGAAGCCGGTGGTTGGA 592
Query 887 AGGACCGGACGACGGTAGAGGACATGGACTTGGCCGTTCGTGTTGGTCTTC-TCGGTTGG 945
| ||||| || || ||||| ||||||||||||||||||||||||||||| | | || |||
Sbjct 593 AAGACCGAACCACCGTAGAAGACATGGACTTGGCCGTTCGTGTTGGTCTACAT-GGCTGG 651
Query 946 AAATTTATCTTCGTCAATGACCTCGAGGTTAAAAGCGAGCTACCAAGCCAATTTAAGGCC 1005
|||||| ||||||||||||| | | ||| ||||| |||||||||||||||||||||| |
Sbjct 652 AAATTTGTCTTCGTCAATGATGTTGCGGTGAAAAGTGAGCTACCAAGCCAATTTAAGG-C 710
Query 1006 TTTC-GATTCCAACAGCATCGGTGGTCTTGTGGTCCAGCCAATCTTATT-AGGAAAATGA 1063
|||| | ||||| || ||||| ||||| || |||||||| |||| | || || |||||||
Sbjct 711 TTTCAGGTTCCAGCAACATCGATGGTCATGCGGTCCAGCTAATC-TCTTCAGAAAAATGA 769
Query 1064 CGATGGAAATTATTCACAATAAGAGAGTGAAGATTTGGAAGAAGTTTTACGTGATCTACA 1123
| ||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 770 CTATGGAAATTATTCGCAATAAGAGAGTGACGATTTGGAAGAAATTTTATGTGATCTACA 829
Query 1124 GCTTCTTTTTCCTACGGAAGATCGTAGTCCACTTCTTCACTTAT-TTCTTTTACTGTGTC 1182
| ||||||||| || |||||||| ||||||| |||||||||| | ||||| || ||| ||
Sbjct 830 GTTTCTTTTTCGTAAGGAAGATCATAGTCCATTTCTTCACTT-TCTTCTTCTATTGTTTC 888
Query 1183 ATTCTTCCTACAAGTGTCTTCCTTCCCGAAGTAAATATACCGAAC-TGGTCAACTATATA 1241
|||||||||| || || ||| |||||||||| || || ||| || ||||||||| | ||
Sbjct 889 ATTCTTCCTATGAGCGTATTCTTTCCCGAAGTCAACATTCCG-ACTTGGTCAACTGTTTA 947
Query 1242 -TGTTCCTTCTGTCATCACCCTCTTGAGTGCCATTGCCACTCCAAGATCATTCTACCTCG 1300
| |||||| | | ||||| || || | ||||||||| || || |||| || |||||||
Sbjct 948 CT-TTCCTTTTATGATCACTCTATTCAATGCCATTGCGACACCGCGATCTTTTTACCTCG 1006
Query 1301 TGATTTTTTGGGTCTTATTCGAAAATGTAATGGCTATGCACCGGACCAAGGGAACTTTGA 1360
|||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |
Sbjct 1007 TGATTTTTTGGGTCTTATTCGAAAATGTAATGGCTATGCATCGGACCAAAGGCACTTTCA 1066
Query 1361 TTGGCTTATTTGAAGGAGGAAGAGTCAATGAATGGGTTGTCACAGAGAAATTAGGAGATA 1420
| || ||| |||||||||| ||||| || |||||||| ||||| |||||||||||||||
Sbjct 1067 TCGGTTTACTTGAAGGAGGGAGAGTGAACGAATGGGTCGTCACCGAGAAATTAGGAGATG 1126
Query 1421 CTCTTAACACTAAGCTACTTCCCCA-G--A-A-----TGG--ACGACTT-C-CGAAAAGA 1467
|||| | |||||| |||||||||| | | | | | | | || | ||| | ||
Sbjct 1127 CTCTCGAGACTAAGTTACTTCCCCAAGTCAGAAAACCTCGCTATGGGTTTCTCGACAGGA 1186
Query 1468 GTAAATTTGAAGGAGATGATGAT-GGGTATATACATATTATGTTGTGCTTGCTACGACTT 1526
|||| | |||||||||||| | ||| ||||||||||| |||||||| | ||| || |
Sbjct 1187 -TAAACTCAAAGGAGATGATGGTCGGG-ATATACATATTGTGTTGTGCCTCCTATAACCT 1244
Query 1527 TG-CATTTGGAAATG-CATTTTTATAT-TTGTATCTCTT-CATGCAAGCCACT-GCTTTT 1581
|| | ||||| || | |||| |||||| || ||||| || |||||| || || ||||||
Sbjct 1245 TGTC-TTTGGGAA-GACATTGTTATATATT-TATCT-TTACATGCAGGCT-CTTGCTTTT 1299
Query 1582 CTCATCT-CCGGAGTTGGCTTTGTTGGAACTT 1612
| || | ||||| |||| ||||| |||||||
Sbjct 1300 ATTAT-TGCCGGAATTGGTTTTGTAGGAACTT 1330
> Ahg905719 jgi|Araly1|905719|Al_scaffold_0003_2847
Length=969
Score = 621 bits (336), Expect = 5e-177
Identities = 751/942 (80%), Gaps = 66/942 (7%)
Strand=Plus/Plus
Query 82 CTTAAAGCATCCGTGGATGGTGTGGGGATAAACAT-GAGCACTATGTGG--A-GAGAAAC 137
||| |||||||||| |||||||| |||||| ||| || ||| | ||| | |||||
Sbjct 31 CTTGAAGCATCCGTTAATGGTGTGAGGATAAGCATCGA-CACAACATGGACACGAGAATT 89
Query 138 AAGGA-ATGT-ATTCATAGTTCCATTGTTCAAGTGTATAGTGGTTATGTGTTTGATCATC 195
|||| | | || |||||||| || ||||||||| | |||| | | |||||||| |||
Sbjct 90 GAGGAGCT-TCCTT-ATAGTTCCCTTATTCAAGTGTTTGGTGGCTCTTTGTTTGATAATC 147
Query 196 TCGCTCTTAGTTTTCGTTGAGAGTGTTTACATGAACCTTGTAGTACTCTATGTCAAGTTG 255
|| |||||||||||| | ||| || | ||||||||||||||||| ||||| |||||||||
Sbjct 148 TCCCTCTTAGTTTTCATAGAGGGTATATACATGAACCTTGTAGTGCTCTACGTCAAGTTG 207
Query 256 TTTAACCGAAAACCAGAGAAAGTCTACAAATGGGAGGCAATGCAGGAGGATATGGAGCTT 315
||||| |||||||| || ||| ||||||||| |||| | |||| |||||| || |||||
Sbjct 208 TTTAAGCGAAAACCCGA-AAAATCTACAAATAGGAGCCGATGCCGGAGGACATTGAGCTC 266
Query 316 GGTCATCAAAATTATCCGATGGTCCTTGTTCAAATCCCAATGTACAACGAACGAGAGG-- 373
|| ||| ||| || || ||||||||||||||||| ||||||||||||||| |||||
Sbjct 267 GGACATGAAACCTACCCCATGGTCCTTGTTCAAATTCCAATGTACAACGAAAAAGAGGTA 326
Query 374 ----T-C---T-TT--G------AATTATCTATAGGTGCTGCGTGCAGACTAA-CATGGC 415
| | | || | ||||||||||||||||||| || ||||||| | ||||
Sbjct 327 TATCTACATGTATTCAGTCCTTCAATTATCTATAGGTGCTGCATGTAGACTAATC-TGGC 385
Query 416 CATCGGACCGTCTAATTGTTCAAGTTTTAGATGATTCCACCGAT-----C--C-AGCA-- 465
||| |||||| ||||||||||||||| ||||||||||||| ||| | | || |
Sbjct 386 CATTGGACCGCCTAATTGTTCAAGTTCTAGATGATTCCACTGATCAAACCATCAAGAAGT 445
Query 466 AT----C---A--T--GGAACTGGTGAGCATGGAATGTACAAAATGGG-CATCAAAAGAC 513
|| | | | || ||||||| || || ||| |||| |||| | | ||| |
Sbjct 446 ATAGAACTGAATTTCAGGGGCTGGTGAACACAGAGTGTGCAAAGTGGGAAAGC-CAAGGC 504
Query 514 ATAAATATAAATTATGAGAGGCGAGAGAACAGAAATGGCTACAAGGCTGGAGCTCTTAAG 573
|||||||||| | ||||||| |||| |||||||||||||| || || |||||||||||
Sbjct 505 GTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAAAGCCGGAGCTCTTAAA 564
Query 574 CACGGCATGAGGCACAGTTACGTCAAGC-AGTGCCA-ATATCTTGCCATCTTTGATGCTG 631
|| ||||||| ||||| ||||| |||| | || || |||| ||| ||||||||| || |
Sbjct 565 CAAGGCATGAAGCACAACTACGTGAAGCTA-TG-CAGATATGTTGTCATCTTTGACGCAG 622
Query 632 A-TTTCCAGCCCGAGCCCGATTACCTCCAACGCGCTATCCCCTTTCTTATCCACAACCCT 690
| ||| || || ||||| ||||||||||||||| || ||||||| || | || |||||
Sbjct 623 ACTTT-CAACCGGAGCCTGATTACCTCCAACGCTCTGTCCCCTTCCTCGTTCATAACCCC 681
Query 691 GAGGTCGCTCTTGTCCAAGCTCGATGGAGATTTGTAAACGCTAACACA-TGCTTAATGAC 749
|||||||||||||| ||||| ||||||||||| | ||| | |||| | ||||| |||||
Sbjct 682 GAGGTCGCTCTTGTTCAAGCCCGATGGAGATTCATGAACTCAAACA-AGTGCTTGATGAC 740
Query 750 GAGGATGCAAGAGATGTCTCTGAACTACCATTTCATGGCAGAGCA-ACAATCTGGATCCA 808
|||||||||||||||||| || |||||||| |||||||| || | | ||||||||||||
Sbjct 741 GAGGATGCAAGAGATGTCCCTCAACTACCACTTCATGGCGGA-AATAGAATCTGGATCCA 799
Query 809 CAAGACATGCTTTCTTTGGCTTTAATGGAACTGCGGGAGTATGGAGAATGGTGGCGATGG 868
| |||||||| |||||| |||| |||||||||||||| ||||||||||||| || ||||
Sbjct 800 CTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGACGCAATGG 859
Query 869 AAGAAGCTGGAGGATGGAAGGACCGGACGACGGTAGAGGACATGGACTTGGCCGTTCGTG 928
||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||
Sbjct 860 AAGAAGCTGGAGGATGGCATGACCGGACCACTGTAGAGGACATGGACTTGGCCGTTCGTG 919
Query 929 TTGGTCTTCTCGGTTGGAAATTTATCTT-CGTCAATGACCTC 969
|||||||||||| ||||||||| |||| | |||||||||||
Sbjct 920 CTGGTCTTCTCGGCTGGAAATTTGTCTTTC-TCAATGACCTC 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5