BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13440.1

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg358968 jgi|Araly1|358968|fgenesh1_pg.C_scaffold_9000008           723    0.0  


> Ahg358968 jgi|Araly1|358968|fgenesh1_pg.C_scaffold_9000008
Length=579

 Score =  723 bits (391),  Expect = 0.0
 Identities = 433/454 (95%), Gaps = 0/454 (0%)
 Strand=Plus/Plus

Query  1    ATGGATGAGCTCCACGAAGCCGCGATTGCTTATTACAACAATGGCTCCATGGAACAACAA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  1    ATGGATGAGCTCCACGAAGCCGCGATTGCTTATTACAACAATGGCTCCATGGAACAGCAG  60

Query  61   AATTTGTCGTGGCAGTTTTTCCGGGCAATGGATGTTAACGGAGACGGCCGTGTCAGCCTT  120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AATTTGTCGTGGCAGTTTTTCCGGGCAATGGACGTTAACGGAGACGGCCGTGTCAGCCTT  120

Query  121  CAAGAATACACCGACTTCTTGCGTCAAACCGCTGGTTTAGCTTGGATCCATCCCGAGATG  180
            ||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  121  CAAGAGTACACCGAGTTCTTGCGTCAAACCGCTGGTTTAGCTTGGGTCCATCCTGAGATG  180

Query  181  TTTCGGGAGCTCGACCGAAATGGAGATGGTCAGCTTGACTTTTGGGAGGTCTTGACGCTT  240
            ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  181  TTTCGCGAGCTAGACCGAAATGGAGATGGTCAGCTCGACTTTTGGGAGGTCTTGACTCTT  240

Query  241  TACTACGTGGCTCGGACCCGGACCATTAACTGCCGCACATGCCTCCGGATTCTCAATGGT  300
            ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||| 
Sbjct  241  TACTATGTGGCTCGGACCAGGACCATTAGCTGCCGCACGTGCCTCCGGATTCTCAATGGC  300

Query  301  CTATACTTCACGTGTGTCACATGCTTTGAATCTTCATGTGGCAACACGTTTGATCTTTGC  360
            ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  301  CTATACTTCACGTGTGTCACATGCTTTGAGTCTCCATGTGGCAACACGTTTGATCTTTGC  360

Query  361  GTCAAGTGTTATATGCGTCGGACGTATTGTCATCCGCATCGTCTCTTTTTGGATAGTTAT  420
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  361  GTCAAGTGTTATATGCGTCGGACGTATTGTCATCCACATCGTCTCTTCTTGGATAGTTAT  420

Query  421  GTCTTATTACGATCAAGACGTATCCACCATCCTT  454
            |||||||||||||| |||||||||||||||||||
Sbjct  421  GTCTTATTACGATCTAGACGTATCCACCATCCTT  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16826614749


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5