BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13450.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497040 jgi|Araly1|497040|fgenesh2_kg.9__5__AT4G13450.1 1147 0.0
> Ahg497040 jgi|Araly1|497040|fgenesh2_kg.9__5__AT4G13450.1
Length=817
Score = 1147 bits (621), Expect = 0.0
Identities = 777/847 (92%), Gaps = 31/847 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGAGGGTCGTAGAGGATCATCTTCAACACCACAGTCTCGTAAGATCATGGTGATC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAAGAGGGTCGTAGAGGATCATCTTCAACACCACAATCTCGTAAGATCATGGTGATC 60
Query 61 GCTGATCCGACACGTGAATCTGCAGCAGCTCTTCAATACGCTCTTTCACACGCCGTGCTC 120
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCTGATCCGACCCGTGAATCTGCAGCCGCTCTTCAATACGCTCTTTCACACGCCGTGCTC 120
Query 121 GAGCAAGACGAGCTTATTCTTGTACATATTGAAAACTCTGGTGGTTCTTGGAAAAATGCT 180
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 121 GAGCAAGACGAGCTTATTCTTGTTCATGTTGAAAACTCTGGTGGTTCTTGGAAAAACGCT 180
Query 181 TTCTCAAGTTTTTTGAGATTACCAAGCTCAATCTCTTCCTCTAGCAGCGGCTCCTCTCCC 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 TTCTCAAGTTTTTTGAGATTACCAAGCTCCATCTCTTCCTCTAGCAGCGGCTCCTCCCCC 240
Query 241 GCTTCTAACGGTACCACAACCGCTTCTAACGCCGCAGCAAACGCCTTAGCCTCGGAGATT 300
||||||||||| ||| |||||||||||||||| ||||||| ||| |||||||| ||||||
Sbjct 241 GCTTCTAACGGCACCGCAACCGCTTCTAACGCGGCAGCAACCGCTTTAGCCTCTGAGATT 300
Query 301 GGTCAAGGAGATGGTAACTTCTTGGAACAAATGAAACGAATATGTGAAATCGCTCAGCCA 360
|||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 301 GGTCAAGGAGATGGGAATTTCTTGGAACAGATGAAACGGATATGTGAAATCGCTCAGCCA 360
Query 361 AAGGTGCGTGTACACACCGAGTGTATAGCTATAGATGGCGTCAAAGCTACAGCGATTCTT 420
|| ||||| ||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 361 AAAGTGCGAGTACACACCGAGTGTATAGCTATGGAAGGTGTCAAAGCTACAGCGATTCTT 420
Query 421 CTTCATGGTGACAAGCTTGGCGTTGATGTTATAATCATAGGCCAACGCCGGACTATCTCA 480
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 421 CTTCATGGTGACAAGCTTGGTGTTGATGTTATAATCATAGGCCAACGTCGGACAATCTCA 480
Query 481 TCCTCCCTTCTAGGAACTAGGAGGCCTGGAGGGTCACTAAGAGGTTCCAAAGGAGTAGAC 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TCCTCCCTTCTAGGAACTAGGAGGCCTGGAGGGTCACTAAGAGGTTCAAAAGGAGTAGAC 540
Query 541 ACAGCGGAATATTTAATCGAGAACAGCAAATGCACTTGTGTTGGTGTAACGAAGAAAGGT 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACAGCGGAATATCTAATCGAGAACAGCAAATGCACTTGTGTTGGTGTAACGAAGAAAGGT 600
Query 601 CAAAATGGAGGATATGTTTTAAACACAAAGACACATAAGAACTTCTGGCTCTTGGCATGA 660
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 CAAAATGGAGGTTATGTTTTAAACACCAAGACACATAAGAACTTCTGGCTCTTGGCATGA 660
Query 661 TTATATGCATTGCTCCTAGTCAGTTTTAAATGCTTTCGGGTAGTATAAATTAAAAGAGAA 720
||||||||||||||||||||||||||||||||||||| | | | | ||| || |
Sbjct 661 TTATATGCATTGCTCCTAGTCAGTTTTAAATGCTTTCTG-T-G-ACAAA------GA-A- 709
Query 721 CATGTTGTGACAAAGCATAAGAAGAAATCTAAAGGTTACCTCCACTCATTGATCTTCACT 780
| | | | | | ||| | || ||||||||||||||||||| |||||| ||
Sbjct 710 --T------A-A--G-A-A-GAA-ATAT--AAAGGTTACCTCCACTCATCGATCTTTTCT 752
Query 781 TGttttttttttCGTCATCTCTAAATT-CTAGCAATCAAGTGTTCTTTTATATGTTATTT 839
|||||||||| | ||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 753 TGTTTTTTTTC-C-TCATCTCTAAATTTCTAGCAATGAAGTGTTCTTTTGTATGTTATTT 810
Query 840 TTCCCCT 846
|||||||
Sbjct 811 TTCCCCT 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5