BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13480.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497036 jgi|Araly1|497036|fgenesh2_kg.9__1__AT4G13480.1 1271 0.0
Ahg891068 jgi|Araly1|891068|Al_scaffold_0007_3054 558 2e-158
> Ahg497036 jgi|Araly1|497036|fgenesh2_kg.9__1__AT4G13480.1
Length=802
Score = 1271 bits (688), Expect = 0.0
Identities = 756/790 (96%), Gaps = 0/790 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAAGAAGTTTGGAGAAAGGGTCCATGGACCGCCGAAGAAGACCGTCTTTTGATC 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGGTGGAAGAAGTTTGGAGAAAAGGTCCATGGACCGCCGAGGAAGACCGTCTCTTGATC 60
Query 61 GAATACGTCCGTGTTCACGGTGAAGGTCGTTGGAACTCTGTCTCTAAACTCGCAGGATTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATACGTCCGTGTTCACGGTGAAGGTCGTTGGAACTCTGTCTCTAAACTCGCAGGATTG 120
Query 121 AAAAGGAATGGCAAAAGCTGCAGACTAAGATGGGTGAATTACCTTAGACCAGACCTCAAG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 AAAAGGAATGGCAAAAGCTGCAGACTAAGATGGGTTAATTACCTTAGACCAGATCTCAAG 180
Query 181 AGAGGACAGATCACTCCACATGAAGAAAGTATAATACTTGAGCTACACGCTAAGTGGGGA 240
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 AGAGGACAGATCACTCCTCATGAAGAAAATATAATACTTGAGCTACACGCTAAGTGGGGA 240
Query 241 AATAGGTGGTCAACAATTGCACGTAGTTTACCAGGAAGAACAGACAATGAGATCAAGAAC 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATAGGTGGTCTTCAATTGCACGTAGTTTACCAGGAAGAACAGACAATGAGATCAAGAAC 300
Query 301 TATTGGAGAACCCATTTCAAGAAAAAGGCAAAGCCTACGACTAACAATGCGGAGAAGATA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATTGGAGAACCCATTTCAAGAAAAAGGCAAAGCCTACGACTAACAATGCGGAGAAGATA 360
Query 361 AAGAGTCGTCTCCTAAAAAGGCAACACTTCAAGGAACAGAGAGAAATAGAGTTGCAACAA 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 AAGAGTCGTCTCCTAAAAAGGCAACAATTCAAGGAACAGAGAGAAATAGAGTTGCAACAA 420
Query 421 GAACAGCAGTTGTTTCAGTTCGACCAACTCGGTATGAAAAAGATCATCTCTTTACTCGAA 480
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 GAACAACAGTTGTTTCAGTTCGACCAACTCGATATGAAAAAGATCATCTCTTTACTCGAA 480
Query 481 GAAAACAATAGCAGTAGCAGTAGCGATGGCGGTGGTGATGTGTTCTATTATCCTGATCAA 540
|| ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct 481 GATAACAATAGCAGTAGCAGCAGCGATGGCGGTGGTGATGTGTTCTATTCTCCTTATCAA 540
Query 541 ATAACACATTCATCAAAACCCTTTGGCTATAACTCTAATTCATTAGAGGAGCAGTTACAA 600
||||||||||| |||||||||||||| |||||| ||||||| || |||||||||||||||
Sbjct 541 ATAACACATTCTTCAAAACCCTTTGGATATAACCCTAATTCGTTGGAGGAGCAGTTACAA 600
Query 601 GGTAGATTTTCTCCTGTAAACATACCTGATGCTAATACTATGAACGAAGACAATGCCATA 660
|| || ||| |||| |||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct 601 GGGAGGTTTACTCCGGTAAACATACCTGACGCTAATACTATGAGCGAAGACAATGCGATA 660
Query 661 TGGGACGGGTTTTGGAACATGGATGTTGTAAATGGACATGGTGGGAACTTGGGTGTTGTG 720
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 661 TGGGATGGGTTTTGGAACATGGATGTTGTGGATGGAAATGGTGGGAACTTGGGTGTTGTT 720
Query 721 GCTGCTACTGCTGCTTGTGGCCCAAGGAAGCCCTATTTCCATAACTTGGTGATTCCATTT 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTGCTACTGCTGCTTATGGCCCAAGGAAGCCCTATTTCCATAACTTGGTGATTCCATTT 780
Query 781 TGTTAAGTAT 790
||||||||||
Sbjct 781 TGTTAAGTAT 790
> Ahg891068 jgi|Araly1|891068|Al_scaffold_0007_3054
Length=483
Score = 558 bits (302), Expect = 2e-158
Identities = 425/484 (88%), Gaps = 9/484 (2%)
Strand=Plus/Plus
Query 311 CCCATTTCAAG-AAAAAGGCAAAGCCTA-CGACTAACAATGCGGAGAAGATAAAGAGTCG 368
||||||||||| |||||||||||||| | | |||||||||| |||||||| ||||| |||
Sbjct 1 CCCATTTCAAGAAAAAAGGCAAAGCC-AGCAACTAACAATGTGGAGAAGACAAAGAATCG 59
Query 369 TCTCCTAAAAAGGCAACACTTCAAGGAACAGAGAGAAATAGAGTTGCAACAAGAACAGCA 428
|||| |||| |||||||| |||||| ||| |||||||| ||||||||||||||||| ||
Sbjct 60 TCTCTTAAAGAGGCAACAGTTCAAGCAACTTAGAGAAATGGAGTTGCAACAAGAACAACA 119
Query 429 GTTGTTTCAGTTCGACCAACTCGGTATGAAAAAGATCATCTCTTTACTCGAAGAAAACAA 488
||||| ||||||||||| ||||| ||||||||||||||| || ||||| ||||| | |
Sbjct 120 GTTGTGTCAGTTCGACCGACTCGATATGAAAAAGATCATGTCATTACTTGAAGATAGTAG 179
Query 489 TAGCAGTAGCAGTAGCGAT---GGCGGT---GGTGATGTGTTCTATTATCCTGATCAAAT 542
|||||| | || || ||| |||||| ||||||||||| ||| |||| |||||||
Sbjct 180 TAGCAGCAACAACAGTGATGGCGGCGGTGCCGGTGATGTGTTTTATGCTCCTCATCAAAT 239
Query 543 AACACATTCATCAAAACCCTTTGGCTATAACTCTAATTCATTAGAGGAGCAGTTACAAGG 602
|| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 240 AATACATTCATCAAAACCCTTTGGATATAACCCTAATTCGTTAGAGGAGCAGTTACAAGG 299
Query 603 TAGATTTTCTCCTGTAAACATACCTGATGCTAATACTATGAACGAAGACAATGCCATATG 662
|| ||| | || ||||| |||||||| |||||||||||||| |||||||||| |||||
Sbjct 300 TATATTAACGCCGGTAAATATACCTGAAACTAATACTATGAACCAAGACAATGCGATATG 359
Query 663 GGACGGGTTTTGGAACATGGATGTTGTAAATGGACATGGTGGGAACTTGGGTGTTGTGGC 722
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 360 GGACGGGTTTTGGAACATGGATGTTGTGGATGGACATGGTGGGAACTTGGATGTTGTGGC 419
Query 723 TGCTACTGCTGCTTGTGGCCCAAGGAAGCCCTATTTCCATAACTTGGTGATTCCATTTTG 782
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 420 TGCTACTGCTGCTTGTGGCCCAAGGAAGCCTTATTTCCATAACTTGGTTATTCCATTTTG 479
Query 783 TTAA 786
||||
Sbjct 480 TTAA 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5