BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13490.1

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg358962 jgi|Araly1|358962|fgenesh1_pg.C_scaffold_9000002           342    2e-93


> Ahg358962 jgi|Araly1|358962|fgenesh1_pg.C_scaffold_9000002
Length=672

 Score =  342 bits (185),  Expect = 2e-93
 Identities = 228/248 (92%), Gaps = 5/248 (2%)
 Strand=Plus/Plus

Query  1    ATGAGTTTAGAGAGTGATATCAAAGAAAGCAAACGAGTCGTTGAACCATTTGATGATGAC  60
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| 
Sbjct  1    ATGAGTTTAGAGAGTGATATTAAAGAAAGCAAACGAGTCGTTGAACCAGTTGATGATGAA  60

Query  61   GATTGTGCGGTTTGTTTGGAGCCGTTGGCTAATGATGCTGACGAACGAACTGTTGTTAAG  120
            || |||||||||| ||| ||||| ||||||||||||||| |  |||||||||| ||||| 
Sbjct  61   GACTGTGCGGTTTTTTTCGAGCCATTGGCTAATGATGCT-A--AACGAACTGTGGTTAAT  117

Query  121  CTTCGATGTAGCCACAAGTTTCACTTAGATTGTGTTGGTTCATCCTTTAACATAAAGAAC  180
            |||| ||||||||||| |||||||||||||||||||||||||| ||| || |||||||||
Sbjct  118  CTTCAATGTAGCCACAGGTTTCACTTAGATTGTGTTGGTTCATTCTTCAATATAAAGAAC  177

Query  181  AAGATGGAATGTCCATGTTGTAGACAGATTGAAAAAGGGAAA-TGGTTGTTCGCAGAACC  239
            ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct  178  AAGATGGAATGTCCATGTTGTAGACAGATTGAAAA-GGGAAAATGGTTGTTCGCAAAACC  236

Query  240  TGTAGATC  247
            ||||||||
Sbjct  237  TGTAGATC  244


 Score = 99.0 bits (53),  Expect = 4e-20
 Identities = 91/107 (85%), Gaps = 12/107 (11%)
 Strand=Plus/Plus

Query  555  TTATGGCCGTGAAAGAAGCGGTGGGGAAGGCGGTGAAAACAGTTGTGGTGGGGAAGCGGT  614
            ||||||| |||||||||| ||||||| ||||||||||||||   | ||||||||||||||
Sbjct  567  TTATGGCTGTGAAAGAAGTGGTGGGGGAGGCGGTGAAAACA---GCGGTGGGGAAGCGGT  623

Query  615  GGCGGAGGAAGATCAGGTGGGGGAAGCAGCAGAAGGGGCGGAAATGA  661
            |||||| |  |  |    |||||||||||||||||||||||||||||
Sbjct  624  GGCGGA-G--G--C----GGGGGAAGCAGCAGAAGGGGCGGAAATGA  661



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25008633552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5