BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13510.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493556 jgi|Araly1|493556|fgenesh2_kg.7__2989__AT4G13510.1 2429 0.0
Ahg493564 jgi|Araly1|493564|fgenesh2_kg.7__2997__AT4G13510.1 2311 0.0
Ahg484193 jgi|Araly1|484193|fgenesh2_kg.5__185__AT4G13510.1 2078 0.0
Ahg358961 jgi|Araly1|358961|fgenesh1_pg.C_scaffold_9000001 952 0.0
> Ahg493556 jgi|Araly1|493556|fgenesh2_kg.7__2989__AT4G13510.1
Length=1707
Score = 2429 bits (1315), Expect = 0.0
Identities = 1582/1712 (92%), Gaps = 13/1712 (1%)
Strand=Plus/Plus
Query 1 AGCCTCTCTGTTTCATCTTCTTCTCTAAACTCTCAACATGTCTTGC-TCGGCCACCGATC 59
|||||||||||||| ||||||||||||| ||||||||||||||||| | || |||||||
Sbjct 1 AGCCTCTCTGTTTCTTCTTCTTCTCTAATCTCTCAACATGTCTTGCAAC-GCGACCGATC 59
Query 60 TCGCTGTCCTGTTGGGTCCTAATGCCACGGCGGCGGCCAACTACATCTGTGGCCAGTTAG 119
|| | ||| |||| |||||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct 60 TCTCGGTCTTGTTAGGTCCTAATGCCACGGAGGCTGCCAACTACATCTGTGGCCAGCTAA 119
Query 120 GCGACGTCAACAACAAATTTATCGACACCGCTTTCGCTATAGACAACACTTACCTTCTCT 179
||| |||| ||| ||| || |||||| |||||||||| ||||||| ||||||||| ||||
Sbjct 120 GCGTCGTCGACAGCAAGTTCATCGACGCCGCTTTCGCCATAGACACCACTTACCTCCTCT 179
Query 180 TCTCCGCCTACCTTGTCTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCG 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCCGCTTACCTTGTCTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCG 239
Query 240 TGAGAGCCAAGAATACTATGAACATCATGCTTACCAACGTCCTTGACGCTGCAGCCGGTG 299
| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| |
Sbjct 240 TAAGAGCTAAGAATACGATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCCGGAG 299
Query 300 GTCTCTTCTATTATCTGTTTGGCTACGCCTTTGCCTTTGGATCTCCGTCCAATGGTTTCA 359
||||||| || ||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 300 GTCTCTTTTACTATCTATTTGGCTATGCTTTTGCCTTTGGATCTCCGTCCAATGGTTTCA 359
Query 360 TCGGTAAACACTACTTTGGTCTCAAAGACATCCCCACGGCCTCTGCTGACTACTCCAACT 419
| |||||||||||||||||||||||||| |||||||||||| ||||||| || ||||| |
Sbjct 360 TTGGTAAACACTACTTTGGTCTCAAAGATATCCCCACGGCCACTGCTGATTATTCCAATT 419
Query 420 TTCTCTACCAATGGGCCTTTGCAATCGCTGCGGCTGGAATCACAAGTGGCTCGATCGCTG 479
|||||||||||||||||||||| || || |||||||||||||| ||||| ||||||||||
Sbjct 420 TTCTCTACCAATGGGCCTTTGCTATAGCCGCGGCTGGAATCACTAGTGGTTCGATCGCTG 479
Query 480 AACGGACACAGTTCGTGGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACC 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AACGGACTCAGTTCGTGGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACC 539
Query 540 CGGTCGTCTCTCACTGGTTCTGGTCAGTTGATGGATGGGCCAGCCCGTTCCGTACCGATG 599
||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 540 CGGTCGTGTCTCACTGGTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACCGATG 599
Query 600 GAGATTTGCTTTTCAGCACCGGAGCGATAGATTTCGCTGGGTCCGGTGTTGTTCATATGG 659
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 600 GAGATTTGCTTTTCAGAACCGGAGCGATCGATTTCGCTGGCTCCGGTGTTGTTCATATGG 659
Query 660 TCGGAGGTATCGCTGGACTCTGGGGTGCGCTCATCGAAGGTCCACGACTTGGCCGGTTCG 719
||||||||||||||||||||||||| ||| |||| ||||| |||||||| ||||||||||
Sbjct 660 TCGGAGGTATCGCTGGACTCTGGGGAGCGTTCATTGAAGGACCACGACTCGGCCGGTTCG 719
Query 720 ATAACGGAGGCCGTGCCATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTTGGAA 779
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATAACGGTGGCCGTGCCATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTTGGAA 779
Query 780 CATTCCTCCTCTGGTTTGGATGGTACGGATTTAACCCCGGTTCCTTCAACAAGATCCTAG 839
|||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 780 CATTCCTCCTTTGGTTTGGATGGTACGGATTCAACCCCGGTTCTTTCAACAAAATCCTAG 839
Query 840 TCACGTACGAGACAGGCACATA-CAACGGCCAGTGGAGCGCGGTCGGACGGACAGCTGTC 898
|||| ||| | ||||| || || ||| |||||||||||||||||||||||||| || |||
Sbjct 840 TCACATACCAAACAGGAACGTATCAA-GGCCAGTGGAGCGCGGTCGGACGGACGGCCGTC 898
Query 899 ACAACAACGTTAGCTGGCTGCACCGCGGCGCTGACAACCCTATTTGGGAAACGTCTACTC 958
|| || || ||||| ||||||||||||||||| || || || || || |||||||| |||
Sbjct 899 ACTACCACCTTAGCCGGCTGCACCGCGGCGCTCACGACTCTCTTCGGAAAACGTCTTCTC 958
Query 959 TCGGGACATTGGAACGTCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGCCATA 1018
|| || |||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 959 TCTGGCCATTGGAACGTCACCGATGTATGTAACGGTCTCCTCGGAGGGTTTGCAGCCATT 1018
Query 1019 ACTGGTGGCTGCTCTGTCGTTGAGCCATGGGCTGCGATCATCTGCGGGTTCGTGGCGGCC 1078
|| || |||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 1019 ACCGGGGGCTGCTCAGTCGTAGAGCCATGGGCGGCAATCATCTGCGGGTTCGTGGCGGCC 1078
Query 1079 CTAGTCCTCCTCGGATGCAACAAGCTCGCTGAGAAGCTCAAATACGACGACCCTCTTGAG 1138
|||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1079 CTAGTCCTCCTCGGTTGCAACAAGCTCGCGGAGAAGCTTAAATACGACGACCCACTTGAG 1138
Query 1139 GCAGCACAACTACACGGTGGTTGCGGTGCGTGGGGACTAATATTCACGGCTCTCTTCGCT 1198
||||||||||||||||| |||||||| |||||||||||||||||||| || || ||||||
Sbjct 1139 GCAGCACAACTACACGGCGGTTGCGGCGCGTGGGGACTAATATTCACAGCCCTTTTCGCT 1198
Query 1199 CAAGAAAAGTACTTGAACCAGATTTACGGCAACAAACCCGGAAGGCCACACGGTTTGTTT 1258
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 CAAGAAAAGTACTTGAACCAGATTTACGGCAACAGACCCGGAAGGCCACACGGTTTGTTT 1258
Query 1259 ATGGGCGGTGGAGGAAAACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCACGGGT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATGGGCGGTGGAGGAAAACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCACGGGT 1318
Query 1319 TGGGTAAGTGCGACCATGGGGACACTTTTCTTCATCCTCAAGAAAATGAAATTGTTGCGG 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGGGTAAGTGCGACCATGGGGACACTTTTCTTCATCCTCAAGAAAATGAAATTGTTGCGA 1378
Query 1379 ATATCGTCCGAGGATGAGATGGCCGGTATGGATATGACCAGGCACGGTGGTTTTGCTTAT 1438
|||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1379 ATATCGGCAGAGGATGAGATGGCCGGTATGGATATGACCCGGCACGGTGGTTTTGCTTAT 1438
Query 1439 ATGTACTTTGATGATGATGAGTCTCACAAAGCCATTCAGCTTAGGAGAGTTGAGCCACGA 1498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ATGTACTTTGATGATGATGAGTCTCACAAAGCCATTCAGCTTAGGAGAGTTGAGCCACGG 1498
Query 1499 TCTCCTTCTCCTTCTGGTGCTAATACTACACCTACTCCGGTTTGATTTGGATTTTTACTT 1558
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1499 TCTCCTTCTCCTTCTGGTGCTAATACTACTCCAACTCCGGTTTGATTTGGATTTTTACTT 1558
Query 1559 TTAT-TCTCTATTTTCTAGAGTATTATT-TTAAATGATGTTTTGTGATACTTAAATATTG 1616
|||| | | ||||||||||||||||||| ||||| |||| |||| |||| || |||||||
Sbjct 1559 TTATGT-T-TATTTTCTAGAGTATTATTATTAAACGATGGTTTGGGATATTTGAATATTG 1616
Query 1617 TTTTGGATAtttttttGCATTTCAGTAATGTTTT--AGATGTACAGTTTCATGGGG-TTG 1673
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 1617 TTTTGGATATTTTTTA-CATTTCAGTAATGTTTTTTAGATGTACAGTTTCGTGGGGGTTG 1675
Query 1674 TGATGAT-AATATCTATGTGGTCATTTGTGTT 1704
||||||| ||||||||||||||||||||||||
Sbjct 1676 TGATGATTAATATCTATGTGGTCATTTGTGTT 1707
> Ahg493564 jgi|Araly1|493564|fgenesh2_kg.7__2997__AT4G13510.1
Length=1648
Score = 2311 bits (1251), Expect = 0.0
Identities = 1450/1549 (94%), Gaps = 2/1549 (0%)
Strand=Plus/Plus
Query 16 TCTTCTTCTCTAAACTCTCAACATGTCTTGCTCGGCCACCGATCTCGCTGTCCTGTTGGG 75
||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| |||| ||
Sbjct 1 TCTTCTTCTCTAATCTCTCAACATGTCTTGCTCGGTGACCGAACTCGCCGTCTTGTTAGG 60
Query 76 TCCTAATGCCACGGCGGCGGCCAACTACATCTGTGGCCAGTTAGGCGACGTCAACAACAA 135
||| |||||||||| ||| ||||||||||||||||||||| || ||| |||| |||||||
Sbjct 61 TCCCAATGCCACGGAGGCTGCCAACTACATCTGTGGCCAGCTAAGCGTCGTCGACAACAA 120
Query 136 ATTTATCGACACCGCTTTCGCTATAGACAACACTTACCTTCTCTTCTCCGCCTACCTTGT 195
|| |||||| |||||||||| ||||||| ||||||||| ||||||||||| ||||||||
Sbjct 121 GTTCATCGACGCCGCTTTCGCCATAGACACCACTTACCTCCTCTTCTCCGCTTACCTTGT 180
Query 196 CTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTGAGAGCCAAGAATAC 255
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 CTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATAC 240
Query 256 TATGAACATCATGCTTACCAACGTCCTTGACGCTGCAGCCGGTGGTCTCTTCTATTATCT 315
||||||||||||||||||||||| ||||| ||||| ||||| |||||||| || |||||
Sbjct 241 GATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCT 300
Query 316 GTTTGGCTACGCCTTTGCCTTTGGATCTCCGTCCAATGGTTTCATCGGTAAACACTACTT 375
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 ATTTGGCTATGCTTTTGCCTTTGGATCTCCGTCCAATGGTTTCATTGGTAAACACTACTT 360
Query 376 TGGTCTCAAAGACATCCCCACGGCCTCTGCTGACTACTCCAACTTTCTCTACCAATGGGC 435
|||||||||||| |||||||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 361 TGGTCTCAAAGATATCCCCACGGCCACTGCTGATTATTCCAATTTTCTCTACCAATGGGC 420
Query 436 CTTTGCAATCGCTGCGGCTGGAATCACAAGTGGCTCGATCGCTGAACGGACACAGTTCGT 495
|||||| || || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 421 CTTTGCTATAGCCGCGGCTGGAATCACGAGTGGTTCGATCGCTGAACGGACTCAGTTCGT 480
Query 496 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTCTCTCACTG 555
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTGTCTCACTG 540
Query 556 GTTCTGGTCAGTTGATGGATGGGCCAGCCCGTTCCGTACCGATGGAGATTTGCTTTTCAG 615
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 541 GTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACCGATGGAGATTTGCTTTTCAG 600
Query 616 CACCGGAGCGATAGATTTCGCTGGGTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGG 675
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 AACCGGAGCGATCGATTTCGCTGGCTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGG 660
Query 676 ACTCTGGGGTGCGCTCATCGAAGGTCCACGACTTGGCCGGTTCGATAACGGAGGCCGTGC 735
||||||||| ||| |||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 661 ACTCTGGGGAGCGTTCATTGAAGGACCACGACTCGGCCGGTTCGATAACGGTGGCCGTGC 720
Query 736 CATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTTGGAACATTCCTCCTCTGGTT 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 CATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTTGGAACATTCCTCCTTTGGTT 780
Query 796 TGGATGGTACGGATTTAACCCCGGTTCCTTCAACAAGATCCTAGTCACGTACGAGACAGG 855
||||||||||||||| ||||||||||| |||||||| ||||||||||| ||| | |||||
Sbjct 781 TGGATGGTACGGATTCAACCCCGGTTCTTTCAACAAAATCCTAGTCACATACCAAACAGG 840
Query 856 CACATA-CAACGGCCAGTGGAGCGCGGTCGGACGGACAGCTGTCACAACAACGTTAGCTG 914
|| || ||| |||||||||||||||||||||||||| || ||||||||||| ||||| |
Sbjct 841 AACGTATCAA-GGCCAGTGGAGCGCGGTCGGACGGACGGCCGTCACAACAACCTTAGCCG 899
Query 915 GCTGCACCGCGGCGCTGACAACCCTATTTGGGAAACGTCTACTCTCGGGACATTGGAACG 974
|||||||||| ||||| ||||| || |||||||| ||||| |||||||||||||||||||
Sbjct 900 GCTGCACCGCCGCGCTCACAACACTCTTTGGGAAGCGTCTCCTCTCGGGACATTGGAACG 959
Query 975 TCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGCCATAACTGGTGGCTGCTCTG 1034
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 960 TCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGCCATAACTGGTGGCTGCTCAG 1019
Query 1035 TCGTTGAGCCATGGGCTGCGATCATCTGCGGGTTCGTGGCGGCCCTAGTCCTCCTCGGAT 1094
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1020 TCGTTGAGCCATGGGCGGCCATCATCTGCGGGTTCGTGGCGGCCCTTGTCCTCCTCGGAT 1079
Query 1095 GCAACAAGCTCGCTGAGAAGCTCAAATACGACGACCCTCTTGAGGCAGCACAACTACACG 1154
||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 1080 GCAACAAGCTCGCGGAGAAGCTTAAATACGACGACCCGCTTGAGGCAGCACAGCTACACG 1139
Query 1155 GTGGTTGCGGTGCGTGGGGACTAATATTCACGGCTCTCTTCGCTCAAGAAAAGTACTTGA 1214
|||||||||| |||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1140 GTGGTTGCGGCGCGTGGGGACTAATATTCACAGCCCTTTTCGCTCAAGAAAAGTACTTGA 1199
Query 1215 ACCAGATTTACGGCAACAAACCCGGAAGGCCACACGGTTTGTTTATGGGCGGTGGAGGAA 1274
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ACCAGATTTACGGCAACAGACCCGGAAGGCCACACGGTTTGTTTATGGGCGGTGGAGGAA 1259
Query 1275 AACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCACGGGTTGGGTAAGTGCGACCA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCACGGGTTGGGTAAGTGCGACCA 1319
Query 1335 TGGGGACACTTTTCTTCATCCTCAAGAAAATGAAATTGTTGCGGATATCGTCCGAGGATG 1394
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 1320 TGGGGACACTTTTCTTCATACTCAAGAAAATGAAATTGTTGCGGATATCGGCAGAGGATG 1379
Query 1395 AGATGGCCGGTATGGATATGACCAGGCACGGTGGTTTTGCTTATATGTACTTTGATGATG 1454
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGATGGCCGGTATGGATATGACCCGGCACGGTGGTTTTGCTTATATGTACTTTGATGATG 1439
Query 1455 ATGAGTCTCACAAAGCCATTCAGCTTAGGAGAGTTGAGCCACGATCTCCTTCTCCTTCTG 1514
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1440 ATGAGTCTCACAAAGCCATTCAGCTTAGAAGAGTTGAGCCAAGATCTCCTTCTCCTTCTG 1499
Query 1515 GTGCTAATACTACACCTACTCCGGTTTGATTTGGATTTTTACTTTTATT 1563
||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1500 GTGCTAATACTACTCCTACTCCGGTTTGATTTGGATTTTTATTTTTATT 1548
> Ahg484193 jgi|Araly1|484193|fgenesh2_kg.5__185__AT4G13510.1
Length=1598
Score = 2078 bits (1125), Expect = 0.0
Identities = 1409/1550 (91%), Gaps = 4/1550 (0%)
Strand=Plus/Plus
Query 16 TCTTCTTCTCTAAACTCTCAACATGTCTTGCTCGGCCACCGATCTCGCTGTCCTGTTGGG 75
||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| |||| ||
Sbjct 1 TCTTCTTCTCTAATCTCTCAACATGTCTTGCTCGGTGACCGAACTCGCCGTCTTGTTAGG 60
Query 76 TCCTAATGCCACGGCGGCGGCCAACTACATCTGTGGCCAGTTAGGCGACGTCAACAACAA 135
||| |||||||||| ||| ||||||||||||||||||||| || ||| |||| |||||||
Sbjct 61 TCCCAATGCCACGGAGGCTGCCAACTACATCTGTGGCCAGCTAAGCGTCGTCGACAACAA 120
Query 136 ATTTATCGACACCGCTTTCGCTATAGACAACACTTACCTTCTCTTCTCCGCCTACCTTGT 195
|| |||||| |||||||||| ||||||| ||||||||| ||||||||||| ||||||||
Sbjct 121 GTTCATCGACGCCGCTTTCGCCATAGACACCACTTACCTCCTCTTCTCCGCTTACCTTGT 180
Query 196 CTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTGAGAGCCAAGAATAC 255
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 CTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATAC 240
Query 256 TATGAACATCATGCTTACCAACGTCCTTGACGCTGCAGCCGGTGGTCTCTTCTATTATCT 315
||||||||||||||||||||||| ||||| ||||| ||||| |||||||| || |||||
Sbjct 241 GATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCT 300
Query 316 GTTTGGCTACGCCTTTGCCTTTGGATCTCCGTCCAATGGTTTCATCGGTAAACACTACTT 375
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 ATTTGGCTATGCTTTTGCCTTTGGATCTCCGTCCAATGGTTTCATTGGTAAACACTACTT 360
Query 376 TGGTCTCAAAGACATCCCCACGGCCTCTGCTGACTACTCCAACTTTCTCTACCAATGGGC 435
|||||||||||| |||||||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 361 TGGTCTCAAAGATATCCCCACGGCCACTGCTGATTATTCCAATTTTCTCTACCAATGGGC 420
Query 436 CTTTGCAATCGCTGCGGCTGGAATCACAAGTGGCTCGATCGCTGAACGGACACAGTTCGT 495
|||||| || || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 421 CTTTGCTATAGCCGCGGCTGGAATCACTAGTGGTTCGATCGCTGAACGGACTCAGTTCGT 480
Query 496 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTCTCTCACTG 555
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTGTCTCACTG 540
Query 556 GTTCTGGTCAGTTGATGGATGGGCCAGCCCGTTCCGTACCGATGGAGATTTGCTTTTCAG 615
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 541 GTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACCGATGGAGATTTGCTTTTCAG 600
Query 616 CACCGGAGCGATAGATTTCGCTGGGTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGG 675
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 AACCGGAGCGATCGATTTCGCTGGCTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGG 660
Query 676 ACTCTGGGGTGCGCTCATCGAAGGTCCACGACTTGGCCGGTTCGATAACGGAGGCCGTGC 735
||||||||| ||| |||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 661 ACTCTGGGGAGCGTTCATTGAAGGACCACGACTCGGCCGGTTCGATAACGGTGGCCGTGC 720
Query 736 CATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTTGGAACATTCCTCCTCTGGTT 795
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 721 CATCGCTCTTCGTGGCCACTCAGCGTCACTTGTTGTCCTTGGAACATTCCTCCTTTGGTT 780
Query 796 TGGATGGTACGGATTTAACCCCGGTTCCTTCAACAAGATCCTAGTCACGTACGAGACAGG 855
||||||||||||||| ||||||||||| |||||||||||||||||||| ||| | |||||
Sbjct 781 TGGATGGTACGGATTCAACCCCGGTTCTTTCAACAAGATCCTAGTCACATACCAAACAGG 840
Query 856 CACATA-CAACGGCCAGTGGAGCGCGGTCGGACGGACAGCTGTCACAACAACGTTAGCTG 914
|| || ||| |||||||||||||||||||||||||| || ||||| || || ||||| |
Sbjct 841 AACGTATCAA-GGCCAGTGGAGCGCGGTCGGACGGACGGCCGTCACTACCACCTTAGCCG 899
Query 915 GCTGCACCGCGGCGCTGACAACCCTATTTGGGAAACGTCTACTCTCGGGACATTGGAACG 974
|||||||||||||||| || || || || || |||||||| ||||| || ||||||||||
Sbjct 900 GCTGCACCGCGGCGCTCACGACTCTCTTCGGAAAACGTCTTCTCTCTGGCCATTGGAACG 959
Query 975 TCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGCCATAACTGGTGGCTGCTCTG 1034
|||| |||||||| ||||| |||||||||||||||||||| ||||| || |||||||| |
Sbjct 960 TCACCGATGTATGTAACGGTCTCCTCGGAGGGTTTGCAGCAATAACCGGCGGCTGCTCCG 1019
Query 1035 TCGTTGAGCCATGGGCTGCGATCATCTGCGGGTTCGTGGCGGCCCTAGTCCTCCTCGGAT 1094
|||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1020 TCGTAGAGCCATGGGCAGCGATCATCTGCGGGTTCGTAGCGGCTCTCGTCCTCCTCGGAT 1079
Query 1095 GCAACAAGCTCGCTGAGAAGCTCAAATACGACGACCCTCTTGAGGCAGCACAACTACACG 1154
||||||||||||| ||||| ||||||||||||||||| || ||||||||||| || ||||
Sbjct 1080 GCAACAAGCTCGCGGAGAAACTCAAATACGACGACCCACTCGAGGCAGCACAGCTCCACG 1139
Query 1155 GTGGTTGCGGTGCGTGGGGACTAATATTCACGGCTCTCTTCGCTCAAGAAAA-GTACTTG 1213
| |||||||| |||||||| ||||| || || || || |||||| | ||||| ||||||
Sbjct 1140 GCGGTTGCGGCGCGTGGGGGCTAATTTTTACAGCGCTTTTCGCTGA-GAAAAAGTACTTA 1198
Query 1214 AACCAGATTTACGGCAACAAACCCGGAAGGCCACACGGTTTGTTTATGGGCGGTGGAGGA 1273
|||||| |||| ||| ||| |||||||||||| |||||||||| ||||| |||||||||
Sbjct 1199 AACCAGGTTTATGGCGACAGACCCGGAAGGCCTTACGGTTTGTTCATGGGTGGTGGAGGA 1258
Query 1274 AAACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCACGGGTTGGGTAAGTGCGACC 1333
||||| |||||||||||||||||||| || ||||||||||| |||||||| |||| ||||
Sbjct 1259 AAACTCCTTGGAGCTCAGCTGATTCAAATAATTGTGATCACAGGTTGGGTTAGTGTGACC 1318
Query 1334 ATGGGGACACTTTTCTTCATCCTCAAGAAAATGAAATTGTTGCGGATATCGTCCGAGGAT 1393
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1319 ATGGGTACACTTTTCTTTATCCTCAAGAAAATGAAATTATTGCGGATATCATCAGAGGAT 1378
Query 1394 GAGATGGCCGGTATGGATATGACCAGGCACGGTGGTTTTGCTTATATGTACTTTGATGAT 1453
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1379 GAGATGGCCGGTATGGATATGACCCGGCACGGTGGTTTTGCTTATATGTACCATGATGAT 1438
Query 1454 GATGAGTCTCACAAAGCCATTCAGCTTAGGAGAGTTGAGCCACGATCTCCTTCTCCTTCT 1513
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1439 GATGAGTCTCACAAAGCCATTCAGCTTAGAAGAGTTGAGCCAAGATCTCCTTCTCCTTCT 1498
Query 1514 GGTGCTAATACTACACCTACTCCGGTTTGATTTGGATTTTTACTTTTATT 1563
|||||||| |||| ||||||||||||||||||||||||||| |||||||
Sbjct 1499 GGTGCTAAAACTATTCCTACTCCGGTTTGATTTGGATTTTTATTTTTATT 1548
> Ahg358961 jgi|Araly1|358961|fgenesh1_pg.C_scaffold_9000001
Length=677
Score = 952 bits (515), Expect = 0.0
Identities = 624/678 (92%), Gaps = 2/678 (0%)
Strand=Plus/Plus
Query 38 ATGTCTTGC-TCGGCCACCGATCTCGCTGTCCTGTTGGGTCCTAATGCCACGGCGGCGGC 96
||||||||| | || ||||||||| | ||| |||| |||||||||||||||| ||| ||
Sbjct 1 ATGTCTTGCAAC-GCGACCGATCTCTCGGTCTTGTTAGGTCCTAATGCCACGGAGGCTGC 59
Query 97 CAACTACATCTGTGGCCAGTTAGGCGACGTCAACAACAAATTTATCGACACCGCTTTCGC 156
||||||||||||||||||| || ||| ||||||||||||||| |||||||||||||||||
Sbjct 60 CAACTACATCTGTGGCCAGCTAAGCGTCGTCAACAACAAATTCATCGACACCGCTTTCGC 119
Query 157 TATAGACAACACTTACCTTCTCTTCTCCGCCTACCTTGTCTTCTCTATGCAGCTTGGCTT 216
|| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 CATCGACAACACATACCTCCTCTTCTCCGCTTACCTTGTCTTCTCTATGCAGCTTGGCTT 179
Query 217 CGCTATGCTCTGTGCCGGTTCCGTGAGAGCCAAGAATACTATGAACATCATGCTTACCAA 276
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 180 CGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATACGATGAACATCATGCTTACCAA 239
Query 277 CGTCCTTGACGCTGCAGCCGGTGGTCTCTTCTATTATCTGTTTGGCTACGCCTTTGCCTT 336
||| ||||| ||||| ||||| |||||||| || ||||| |||||||| || ||||||||
Sbjct 240 CGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCTATTTGGCTATGCTTTTGCCTT 299
Query 337 TGGATCTCCGTCCAATGGTTTCATCGGTAAACACTACTTTGGTCTCAAAGACATCCCCAC 396
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 300 TGGATCTCCGTCCAATGGTTTCATTGGTAAACACTACTTTGGTCTCAAAGATATCCCCAC 359
Query 397 GGCCTCTGCTGACTACTCCAACTTTCTCTACCAATGGGCCTTTGCAATCGCTGCGGCTGG 456
|||| ||||||| || ||||| ||||||||||||||||||||||| || || ||||||||
Sbjct 360 GGCCACTGCTGATTATTCCAATTTTCTCTACCAATGGGCCTTTGCTATAGCCGCGGCTGG 419
Query 457 AATCACAAGTGGCTCGATCGCTGAACGGACACAGTTCGTGGCTTACCTAATCTATTCCTC 516
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 AATCACTAGTGGTTCGATCGCTGAACGGACTCAGTTCGTGGCTTACCTAATCTATTCCTC 479
Query 517 TTTCTTAACCGGGTTTGTTTACCCGGTCGTCTCTCACTGGTTCTGGTCAGTTGATGGATG 576
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 480 TTTCTTAACCGGGTTTGTTTACCCGGTCGTGTCTCACTGGTTCTGGTCGGTTGATGGATG 539
Query 577 GGCCAGCCCGTTCCGTACCGATGGAGATTTGCTTTTCAGCACCGGAGCGATAGATTTCGC 636
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 540 GGCCAGTCCGTTCCGGACCGATGGAGATTTGCTTTTCAGAACCGGAGCGATCGATTTCGC 599
Query 637 TGGGTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGGACTCTGGGGTGCGCTCATCGA 696
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 600 TGGCTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGGACTCTGGGGAGCGTTCATTGA 659
Query 697 AGGTCCACGACTTGGCCG 714
||| |||||||| |||||
Sbjct 660 AGGACCACGACTCGGCCG 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5