BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13520.1
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493557 jgi|Araly1|493557|fgenesh2_kg.7__2990__AT4G13520.1 593 3e-169
Ahg936049 jgi|Araly1|936049|scaffold_500240.1 248 3e-65
Ahg936022 jgi|Araly1|936022|scaffold_500213.1 248 3e-65
> Ahg493557 jgi|Araly1|493557|fgenesh2_kg.7__2990__AT4G13520.1
Length=474
Score = 593 bits (321), Expect = 3e-169
Identities = 423/469 (90%), Gaps = 20/469 (4%)
Strand=Plus/Plus
Query 17 AACATTTTAGATCTTTCCCgaagaagaaaacgaagaagagacgaagagagaaATGAGGCC 76
|||||||||||||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct 1 AACATTTTAGATCTTTCCCGAAGAAG---ACGAACAAGA-A-GAAGAGAGAAATGAGGCC 55
Query 77 GATGCAGCTGGATATGTTATCGGAGATGGATGATGCAGGTTCTTCGATGGCCATGGACGT 136
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 56 GATGCAGCTGGATATGTTGTCGGAGATGGATGATGCAGGTTCTTCAATGGCCATGGACGT 115
Query 137 TGATGACCTCGAAGCCATGGAGATACTCAACGAAGGAGGACTTGTCTCAGATAACAAGCT 196
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 116 TGATGACCTCGAAGCCATGGAGATTCTCAACGAAGGAGGACTTGTTTCAGATAACAAGCT 175
Query 197 CGCCGACGCCGATTTCTTCAACAAATTCGATGATGATTTCGATGACACCGATATCAACTA 256
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 176 CGCCGACGCCGATTTCTTCAACAAATTCGAGGATGATTTCGACGACACCGATATCAACTA 235
Query 257 AATCCGGTTAAGTTTCCTCTTTAAGATTTCAGttttttttCCTAAACTTGATGTAATTTG 316
||||||||||| |||| |||||||||||||||||||| | ||||| ||| || |||||||
Sbjct 236 AATCCGGTTAA-TTTCTTCTTTAAGATTTCAGTTTTTGT-CCTAATCTTTATTTAATTTG 293
Query 317 TGGAGAAACCTATGTAGTAAGTGTGTAATAAGTTCTGGGATTTTTATGTTTGTGGTATGT 376
|||||||||||||||| | |||||||| || |||||||||| ||||||||| |||||
Sbjct 294 TGGAGAAACCTATGTAAT--GTGTGTAA---GTCCTGGGATTTTAATGTTTGTGTTATGT 348
Query 377 AACAATGTTTTTCTTCATTT-GGATTACTAAAACATTTGATTTGTGTGTTATTGTGCTTT 435
||||| | ||| | | ||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct 349 AACAACGATTT-CATGTTTTTGGATCACTAAAACATTTGATTTGAGTGTTATTTTGCTTT 407
Query 436 G-TCT-GATT-G-ttt-tttttGGCTCAAATTTAGAATGtttttttttt 479
| | | |||| | ||| |||||| | |||||||||||||||||||||||
Sbjct 408 GGTATTGATTTGATTTGTTTTTG-CACAAATTTAGAATGTTTTTTTTTT 455
> Ahg936049 jgi|Araly1|936049|scaffold_500240.1
Length=230
Score = 248 bits (134), Expect = 3e-65
Identities = 193/221 (87%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 59 gaagag-agaaATGAGGCCGATGCAGCTGGATATGTTATCGGAGATGGATGATGCAGGTT 117
|||||| || |||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 12 GAAGAGAAG-AATGAGGCCGATGCAGCTTGACATGTTATCGGAGATGGATGATGCAGGTT 70
Query 118 CTTCGATGGCCATGGACGTTGATGACCTCGAAGCCATGGAGATACTCAACGAAGGAGGAC 177
|||| |||||||||||||||||||| |||||||| |||||||| | | ||||||||||
Sbjct 71 CTTCAATGGCCATGGACGTTGATGATCTCGAAGCTATGGAGATTTTTAGCGAAGGAGGAG 130
Query 178 TTGTCT-CAGATAACAAGCTCGCCGACGCCGATTTCTTCAACAAATTCGATGATGATTTC 236
|| || |||| | |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 131 GTG-CTTCAGAGAGTAAGCTCGCCGACGCTGATTTCTTCAACAAATTCGAGGATGATTTC 189
Query 237 GATGACACCGATATCAACTAAATCCGGTTAAG-TTTCCTCT 276
|| || |||||||||||| | ||||||||| |||| |||
Sbjct 190 GACGATGCCGATATCAACTGATTCCGGTTAAAATTTCTTCT 230
> Ahg936022 jgi|Araly1|936022|scaffold_500213.1
Length=230
Score = 248 bits (134), Expect = 3e-65
Identities = 193/221 (87%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 59 gaagag-agaaATGAGGCCGATGCAGCTGGATATGTTATCGGAGATGGATGATGCAGGTT 117
|||||| || |||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 12 GAAGAGAAG-AATGAGGCCGATGCAGCTTGACATGTTATCGGAGATGGATGATGCAGGTT 70
Query 118 CTTCGATGGCCATGGACGTTGATGACCTCGAAGCCATGGAGATACTCAACGAAGGAGGAC 177
|||| |||||||||||||||||||| |||||||| |||||||| | | ||||||||||
Sbjct 71 CTTCAATGGCCATGGACGTTGATGATCTCGAAGCTATGGAGATTTTTAGCGAAGGAGGAG 130
Query 178 TTGTCT-CAGATAACAAGCTCGCCGACGCCGATTTCTTCAACAAATTCGATGATGATTTC 236
|| || |||| | |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 131 GTG-CTTCAGAGAGTAAGCTCGCCGACGCTGATTTCTTCAACAAATTCGAGGATGATTTC 189
Query 237 GATGACACCGATATCAACTAAATCCGGTTAAG-TTTCCTCT 276
|| || |||||||||||| | ||||||||| |||| |||
Sbjct 190 GACGATGCCGATATCAACTGATTCCGGTTAAAATTTCTTCT 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19344883623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5