BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13520.1 Length=531 Score E Sequences producing significant alignments: (Bits) Value Ahg493557 jgi|Araly1|493557|fgenesh2_kg.7__2990__AT4G13520.1 593 3e-169 Ahg936049 jgi|Araly1|936049|scaffold_500240.1 248 3e-65 Ahg936022 jgi|Araly1|936022|scaffold_500213.1 248 3e-65 > Ahg493557 jgi|Araly1|493557|fgenesh2_kg.7__2990__AT4G13520.1 Length=474 Score = 593 bits (321), Expect = 3e-169 Identities = 423/469 (90%), Gaps = 20/469 (4%) Strand=Plus/Plus Query 17 AACATTTTAGATCTTTCCCgaagaagaaaacgaagaagagacgaagagagaaATGAGGCC 76 |||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||| Sbjct 1 AACATTTTAGATCTTTCCCGAAGAAG---ACGAACAAGA-A-GAAGAGAGAAATGAGGCC 55 Query 77 GATGCAGCTGGATATGTTATCGGAGATGGATGATGCAGGTTCTTCGATGGCCATGGACGT 136 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 56 GATGCAGCTGGATATGTTGTCGGAGATGGATGATGCAGGTTCTTCAATGGCCATGGACGT 115 Query 137 TGATGACCTCGAAGCCATGGAGATACTCAACGAAGGAGGACTTGTCTCAGATAACAAGCT 196 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 116 TGATGACCTCGAAGCCATGGAGATTCTCAACGAAGGAGGACTTGTTTCAGATAACAAGCT 175 Query 197 CGCCGACGCCGATTTCTTCAACAAATTCGATGATGATTTCGATGACACCGATATCAACTA 256 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 176 CGCCGACGCCGATTTCTTCAACAAATTCGAGGATGATTTCGACGACACCGATATCAACTA 235 Query 257 AATCCGGTTAAGTTTCCTCTTTAAGATTTCAGttttttttCCTAAACTTGATGTAATTTG 316 ||||||||||| |||| |||||||||||||||||||| | ||||| ||| || ||||||| Sbjct 236 AATCCGGTTAA-TTTCTTCTTTAAGATTTCAGTTTTTGT-CCTAATCTTTATTTAATTTG 293 Query 317 TGGAGAAACCTATGTAGTAAGTGTGTAATAAGTTCTGGGATTTTTATGTTTGTGGTATGT 376 |||||||||||||||| | |||||||| || |||||||||| ||||||||| ||||| Sbjct 294 TGGAGAAACCTATGTAAT--GTGTGTAA---GTCCTGGGATTTTAATGTTTGTGTTATGT 348 Query 377 AACAATGTTTTTCTTCATTT-GGATTACTAAAACATTTGATTTGTGTGTTATTGTGCTTT 435 ||||| | ||| | | ||| |||| |||||||||||||||||| |||||||| |||||| Sbjct 349 AACAACGATTT-CATGTTTTTGGATCACTAAAACATTTGATTTGAGTGTTATTTTGCTTT 407 Query 436 G-TCT-GATT-G-ttt-tttttGGCTCAAATTTAGAATGtttttttttt 479 | | | |||| | ||| |||||| | ||||||||||||||||||||||| Sbjct 408 GGTATTGATTTGATTTGTTTTTG-CACAAATTTAGAATGTTTTTTTTTT 455 > Ahg936049 jgi|Araly1|936049|scaffold_500240.1 Length=230 Score = 248 bits (134), Expect = 3e-65 Identities = 193/221 (87%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 59 gaagag-agaaATGAGGCCGATGCAGCTGGATATGTTATCGGAGATGGATGATGCAGGTT 117 |||||| || |||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 12 GAAGAGAAG-AATGAGGCCGATGCAGCTTGACATGTTATCGGAGATGGATGATGCAGGTT 70 Query 118 CTTCGATGGCCATGGACGTTGATGACCTCGAAGCCATGGAGATACTCAACGAAGGAGGAC 177 |||| |||||||||||||||||||| |||||||| |||||||| | | |||||||||| Sbjct 71 CTTCAATGGCCATGGACGTTGATGATCTCGAAGCTATGGAGATTTTTAGCGAAGGAGGAG 130 Query 178 TTGTCT-CAGATAACAAGCTCGCCGACGCCGATTTCTTCAACAAATTCGATGATGATTTC 236 || || |||| | |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 131 GTG-CTTCAGAGAGTAAGCTCGCCGACGCTGATTTCTTCAACAAATTCGAGGATGATTTC 189 Query 237 GATGACACCGATATCAACTAAATCCGGTTAAG-TTTCCTCT 276 || || |||||||||||| | ||||||||| |||| ||| Sbjct 190 GACGATGCCGATATCAACTGATTCCGGTTAAAATTTCTTCT 230 > Ahg936022 jgi|Araly1|936022|scaffold_500213.1 Length=230 Score = 248 bits (134), Expect = 3e-65 Identities = 193/221 (87%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 59 gaagag-agaaATGAGGCCGATGCAGCTGGATATGTTATCGGAGATGGATGATGCAGGTT 117 |||||| || |||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 12 GAAGAGAAG-AATGAGGCCGATGCAGCTTGACATGTTATCGGAGATGGATGATGCAGGTT 70 Query 118 CTTCGATGGCCATGGACGTTGATGACCTCGAAGCCATGGAGATACTCAACGAAGGAGGAC 177 |||| |||||||||||||||||||| |||||||| |||||||| | | |||||||||| Sbjct 71 CTTCAATGGCCATGGACGTTGATGATCTCGAAGCTATGGAGATTTTTAGCGAAGGAGGAG 130 Query 178 TTGTCT-CAGATAACAAGCTCGCCGACGCCGATTTCTTCAACAAATTCGATGATGATTTC 236 || || |||| | |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 131 GTG-CTTCAGAGAGTAAGCTCGCCGACGCTGATTTCTTCAACAAATTCGAGGATGATTTC 189 Query 237 GATGACACCGATATCAACTAAATCCGGTTAAG-TTTCCTCT 276 || || |||||||||||| | ||||||||| |||| ||| Sbjct 190 GACGATGCCGATATCAACTGATTCCGGTTAAAATTTCTTCT 230 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19344883623 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5