BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13530.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493559 jgi|Araly1|493559|fgenesh2_kg.7__2992__AT4G13530.2 1408 0.0
> Ahg493559 jgi|Araly1|493559|fgenesh2_kg.7__2992__AT4G13530.2
Length=982
Score = 1408 bits (762), Expect = 0.0
Identities = 933/1009 (92%), Gaps = 38/1009 (4%)
Strand=Plus/Plus
Query 70 AAAAAACCCCTAACTTTGACATGGAAGGAGAGATTCAAGACTGGGAAATACTTCAGAGCT 129
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAACCTAACTTTGACATGGAAGGAGAGATTCAAGACTGGGAAATACTTCAGAGCT 60
Query 130 CGAGATCTACCACGGAAGATGACAATTCGAGGAGCTTGGAGGAGATTGATGATGGCACGC 189
|||||||||| ||||| ||||| |||||||||| ||||||||||||||| |||| |||||
Sbjct 61 CGAGATCTACAACGGAGGATGATAATTCGAGGAACTTGGAGGAGATTGAAGATGACACGC 120
Query 190 AAGGTATGATTAGGTTTGATCATTTCTCTCTTGAGAACCAGAGTGGTTTGTCTCGTTTGG 249
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAGGTATGATTAGGTTTGATCACTTCTCTCTTGAGAACCAGAGTGGTTTGTCTCGTGTGG 180
Query 250 AGGCAAACGATGAAGATGGGTCTGTTCAATCGGGTAGTCCAGGATGGATCGAACCTAGCT 309
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 AGGAAAACGATGAAGATGGGTCTGTTCAATCGGGTAGTCCAGGCTGGATCGAACCTAGCT 240
Query 310 CCGATGTTCCTTATGGTCCGAAGCATTTTAGTGAGTTATGGTCTGATTCAAGCAGTGATC 369
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGATGCTCCTTATGGTCCTAAGCATTTTAGTGAGTTATGGTCTGATTCAAGCAGTGATC 300
Query 370 GGCTTGATGATCAGAGGTTAGTGGATGATGATGTGAATAACGAGATGGGTATAGAGAGAA 429
||||||| || |||||||||||||||||||| || | || || |
Sbjct 301 GGCTTGAGGAACAGAGGTTAGTGGATGATGA--TG--T-----GA-----AT-------A 339
Query 430 ACGAAGTGGGTATTGTTGAATATAGTGAAAGTATAGCTCAAGACATGGATTTGATAAGCT 489
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 340 ACGAAGTGGGTATTGTTGAATATAGTGAAAGTATAGCACAAGACATGGATTTGATGAGCT 399
Query 490 CTGATGAGAGAAAGGAAGAATCTTTACTTCATCCAGTGGAAGGAGAAGGAAACTCTGTTT 549
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 400 CTGATGAGAGAAAGGAAGAATCTTTACTTCATCCAGTGGAAGGAGAAGGAGACTCTGTTT 459
Query 550 CTATTGATCCTGGTGTTAAATC------TGGTGGTGGAGGAGGAGAAGAGAAAGGG-TTT 602
| |||||||| |||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 460 CGGTTGATCCTTGTGTTAAATCTGGTGGTGGTGGTGGAGGAGGAGAAGAG-AAGGGTTTT 518
Query 603 GTGTGGTGGAAAATTCCAATAGAGGTGTTGAAGTATTGTGTGTTGAAAATTAATCCTATT 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTGTGGTGGAAAATTCCAATAGAGGTGTTGAAGTATTGTGTGTTGAAAATTAATCCTATT 578
Query 663 TGGTCTTTGTCCATGGCTGCAGCATTTGTGGGTTTTGTTATGTTAGGGCGTAGATTGTAC 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TGGTCTTTGTCCATGGCTGCAGCATTTGTGGGTTTTGTTATGTTAGGGCGTAGATTGTAC 638
Query 723 AATATGAAGAAGAAGACTCGTTCCTTGCAGCTTAAGGTTCTTTTGGATGATAAGAAGGTG 782
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||
Sbjct 639 AATATGAAGAAGAAGAGTCGTACCTTGCAGCTTAAGGTTCTTTTGGATGATAAG--G-TG 695
Query 783 GCGAATCATGCTGCTCGGTGGAACGAAGCAATCTCGGTAGTGAAACGTGTGCCCATAATC 842
|| |||||| ||||||||||||||||||| ||||| |||||||||||||| ||| |||||
Sbjct 696 GCTAATCATTCTGCTCGGTGGAACGAAGCTATCTCAGTAGTGAAACGTGTACCCCTAATC 755
Query 843 CGGCCAGCACTTCCGTCATCAGTGGGTATGA--A-CCAGTGGTCCATGATGAGTTTAAGG 899
|||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 756 CGGCCAGCACTTCCATCATCAGTGGGTATGATGAACCAGTGGTCCATGATGAGTTTAAGG 815
Query 900 TGAAA-ATTAAGTGAATTTGAGGGCATAATAATGCATATATGTGAGATTATATGATTTGA 958
||||| || ||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 816 TGAAAGAT-AAGTGAATTTGAGGGCATAATAATGCATATATGTGAGATGAAATGATT-GA 873
Query 959 TGTGGTTGGTGCATGTATCATATGATTGTATTAAAAATGTTACAAAAACATACAAAAAGA 1018
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 874 TATGGTTGGTGCATGTATCATATGATTGTATAAAAAATGTTACAAAAACATACAAAAATA 933
Query 1019 TGCTTGTAAGTTTGTACTGTGTGTGTATATATTGTTACTTGCTTGGTGG 1067
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TGCGTGTAAGTTTGTACTGTGTGTGTATATATTGTTACTTGCTTGGTGG 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5