BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13540.1

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg355465 jgi|Araly1|355465|fgenesh1_pg.C_scaffold_7002638           843    0.0  


> Ahg355465 jgi|Araly1|355465|fgenesh1_pg.C_scaffold_7002638
Length=627

 Score =  843 bits (456),  Expect = 0.0
 Identities = 581/639 (91%), Gaps = 18/639 (3%)
 Strand=Plus/Plus

Query  23   ATGGGTGGTTCTACAAGCAAGGATGAGAGAAACAGTAGTAAGAGACGCATCAAGGTGAAA  82
            |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTGGCTCTACAAGCAAGCAGGAGAGAAACAGTAGTAAGAGACGCATCAAGGTGAAA  60

Query  83   GCAAATG---AACagagaaggagagaaacaagaagagagcttgatgagaaagagagagtg  139
             ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCAAATGAACAACAGAGAAGGAGAGAAACAAGAAGAGAGCTTGATGAGAAAGAGAGAGTG  120

Query  140  attttggcgt-tgaagatggcagagacagagtggaggaaagagaggaagagactgagaga  198
            |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATTTTGGC-TCTGAAGATGGCAGAGACAGAGTGGAGGAAAGAGAGGAAGAGACTGAGAGA  179

Query  199  ggaagtgaagaggctgagacagaagatggaagagaaggaagaagg-aaaggcgaaACAAC  257
            ||| ||| |||| ||||||||||||||||||||||| ||||| || ||| | ||||||||
Sbjct  180  GGAGGTGGAGAGACTGAGACAGAAGATGGAAGAGAAAGAAGA-GGCAAAAGTGAAACAAC  238

Query  258  ACGAGTGGGAATGGGTCGTGGAACAGATGTGTTTAGAGAGAGCAGTGAGGGAAGAAGCTG  317
            |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |
Sbjct  239  ACGAGTGGGAATGGGTTGTGGAACAGATGTGCTTAGAGAGAGCGGTGAGGGAAGAAGCCG  298

Query  318  TGGAGAGGTGGAAGCAGCTCTACTTTGCTATCAAGAATGAGCTTGATGATCTCATCCACA  377
            ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  299  TGGAGAGGTGGAAACAACTCTATTTTGCTATCAAGAATGAGCTTGATGATCTCATCCACA  358

Query  378  CAACATATGGAGAGGCACTGAGACAGAAACCGCAAGAAGAAGTTGCAAAGGCAGTGCAAG  437
            ||||||||||||||||| ||||||||||||| ||||||||| |   |  |    ||||||
Sbjct  359  CAACATATGGAGAGGCATTGAGACAGAAACCTCAAGAAGAAAT---A--G----TGCAAG  409

Query  438  AACTCAGAAAGGAAGTTAAAGCTAGGGGAGAAACCATTGAGACACTGAAAGGGA-GAATA  496
            |||| || ||||||||||||| |||||||||||| ||||||||||| || |||| |||||
Sbjct  410  AACTGAGGAAGGAAGTTAAAGTTAGGGGAGAAACTATTGAGACACTCAA-GGGAAGAATA  468

Query  497  AATTTGATGGAGAAACAACAAAATGGGAAGGAAAGAGAGATTGACTTACTGAGACAGAGT  556
              ||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||
Sbjct  469  GCTTTGATGGAGAAACAACGAAATGAGAAGGAAAGAGAGATTGATTTACTGAGGCAGAGT  528

Query  557  CTGCGTATCCTCGGCGGTAGCAGCGGGAAGAACAAGGCACTATCATCTACTACCAGAAAC  616
            ||||||||||||||||||| |||||||| |||||| ||||  |||||||||||||||| |
Sbjct  529  CTGCGTATCCTCGGCGGTATCAGCGGGAGGAACAAAGCACCGTCATCTACTACCAGAAGC  588

Query  617  CTGACAGTATTCAAAACAAAATTCATCGGGTGTAAATAA  655
            ||| |||||||||||||||||||||| ||| ||||||||
Sbjct  589  CTGCCAGTATTCAAAACAAAATTCATTGGGCGTAAATAA  627



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29583383592


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5