BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13550.1
Length=2971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493561 jgi|Araly1|493561|fgenesh2_kg.7__2994__AT4G13550.1 1690 0.0
> Ahg493561 jgi|Araly1|493561|fgenesh2_kg.7__2994__AT4G13550.1
Length=2534
Score = 1690 bits (915), Expect = 0.0
Identities = 1088/1171 (93%), Gaps = 14/1171 (1%)
Strand=Plus/Plus
Query 840 GGAAACTTGCACAAGGTGCTAGTAGAACTAGACGGAATTGGAGGTGGTGGGAAAGTTCAA 899
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GGAAATTTGCATGAGGTGTTAGTAGAACTAGACGGAATTGGAGGTGGTGGGAAAGTTCAA 573
Query 900 CTGGAGATTAAGTACAAAGGG-TTTGGGGAAGTTGAAGAAGAAAAGAAGTGGTGGAGGTT 958
||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 574 CTGGAGATTAAGTAC-AAGGGATTTGAAGAAGTTGAAGAAGAAAAGAAGTGGTGGAGGTT 632
Query 959 CCCATTTGTTTCAGAATTTCTTCAGAGAAATGAAATTAAGTCAGTTCTGAAGAATTTTGT 1018
||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 633 CCCGTTTGTTTCAGAATTCCTTCAAAGAAATGAAATTAAGTCAGTTCTGAAAAATTTTGT 692
Query 1019 TGACTCTGAAGCAGTTGAGTCAGTTTTGAAAAATCTTGTCGACTCTGAAGCTGTGCCAGC 1078
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 693 TGACTCTGAAGCAGTTGAGTCAGTTTTGAAAAATCTTGTTGACTCTGAAGCTGTGCCAGC 752
Query 1079 ACGTCAATTTGTAGAGTATGCCTTTGGACAGTTAAAGTCACTCAATGACGCT-CCTCTTA 1137
|||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 753 ACGTCAATTTGTAGAGTATGCCTTTGGACAGTTAAAGTCACTCAATGATG-TCCCCCTTA 811
Query 1138 AGAATACTGAACTTTTAAACAAT-ACTGCTGAGGACTCTGAAGGAGCAAGTTCAGAGGAT 1196
|||||| | ||||| |||||||| | ||| ||||||||||||| ||| ||| ||||||||
Sbjct 812 AGAATATTAAACTTCTAAACAATGA-TGCGGAGGACTCTGAAGCAGCGAGTGCAGAGGAT 870
Query 1197 TCGTCAGATCAACATCGCAGTACTAATCTGAGTAGTTCAGGAAAGCTTAGCAAAGACAAA 1256
|| || |||||| ||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct 871 TCATCCGATCAAGATCGCAGTACTGATCTGAGTAGTTCAGGAAAGCTTACCAAAGATAAA 930
Query 1257 GATGGTGATGGCGATGGTCACGGCAATGAACTGGAGGATGATAATGAAAGTGGCAGCATT 1316
|||||||||||| ||| |||||||||||||| ||| ||||||| ||||||||||
Sbjct 931 GATGGTGATGGC------CACATCAATGAACTGGAGGGTGACAATGAAAATGGCAGCATT 984
Query 1317 CAGTCAGAAAGTAATTTCTGGGATAACATCCCTGACATAGTTGGTCAAAATATCGTCCAG 1376
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 985 CAGTCAGAAAGTAATTTCTGGGATAACATCCCTGACATAGTTGGTCAAAGTATTGTTCAG 1044
Query 1377 AAACTTGGCCTTCCTTCACCTGAGAAATTGAAGTGGAATGGAACGGAACTACTTGAAAAT 1436
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 1045 AAACTTGGCCTTCCTTCACCTGAGAAATTGAAGTGGAACGGAATGGAACTACTGGAAAAA 1104
Query 1437 TTTGGTCTACAATCGCGAAAAACTGCAGAAGCCGGTTACATTGAATCAGGGCTTGCCACT 1496
|||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1105 TTTGGTTTACAATCACGAAAAACTGCAGAAGCCAGTTACATTGAATCAGGGCTTGCCACT 1164
Query 1497 GCTGATACTCGAGAAGCAGATGATGAAAAGGAAGATGGTCAGGTCGCTATTAATGC-ATC 1555
|||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||| | |
Sbjct 1165 GCTGATACTCGAGAAGGTGATGATAAAAAGGAAGATGGCCAGCTCGCTATTAATGCGA-C 1223
Query 1556 CAAGTCTTCCCTTGCCGACATGAAGAATGCGACACAAGAATTACTTAAGCAGGCTGATAA 1615
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1224 CAAGTCTTCCCTTGCAGACATGAAGAATGCAACACAAGAATTGCTTAAGCAGGCTGATAA 1283
Query 1616 TGTCTTTGGTGCATTAATGGTTTTAAAAGCAGTAGTGCCTCATTTAAGTAAGGACAGTGT 1675
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1284 TGTCTTTGGTGTATTAATGGTTTTAAAAGCAGTAGTGCCTCAACTAAGTAAGGACAGTCT 1343
Query 1676 TGGTTCAGAGAAGGTCATAGaaaaaaaTGGTTCTTCCAGTGTAACAGACGATGTCTCTGG 1735
|||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||
Sbjct 1344 TGGTTCAGAGAAGGTCATGGAAAAAGATGGTGCTTCCAATGTAACAGACGATGTCTCTGG 1403
Query 1736 TTCCTCTAAGACCGAAAAAATCTCTGGTCTAGTGAATGTTGATGGAGCGGATGAAAAGAA 1795
|||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1404 TTCCCCTAAGAGTGAAAAACTCTCTGGTCTAGTGACTGTTGATGGAGCGGATGAAAAGAA 1463
Query 1796 CGCTGAAGAAATGAAAACACTCTTTTCTAGCGCAGAAAGTGCCATGGAGGCATGGGCAAT 1855
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 CGCTGAGGAAATGAAAACACTCTTTTCTAGCGCAGAAAGTGCCATGGAGGCATGGGCAAT 1523
Query 1856 GCTTGCAACTGCTCTGGGGCATCCAAGCTTTATCAAATCTGAGTTTGAAAAGCTATGCTT 1915
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1524 GCTTGCAACTGCCCTGGGGCATCCAAGCTTTATCAAATCTGAGTTTGAAAAGCTATGTTT 1583
Query 1916 TCTAGAAAACGACATCACTGACACACAGGTGGCAATTTGGCGTGATGCAAGGAGGAAAAG 1975
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1584 TCTAGAAAACGACATCACTGACACACAGGTGGCAATTTGGCGTGATACCAGGAGGAAACG 1643
Query 1976 AGTAGTTATCGCTTTCAGAGGAACTGAACAG 2006
|||||| ||||||||||||||||||||||||
Sbjct 1644 AGTAGTAATCGCTTTCAGAGGAACTGAACAG 1674
Score = 1375 bits (744), Expect = 0.0
Identities = 824/864 (95%), Gaps = 0/864 (0%)
Strand=Plus/Plus
Query 2096 ACAGGTCCATAGTGGATTTCTGAGTGCATACGATTCCGTAAGGATAAGAATTATATCGCT 2155
||||||||||||||||||| |||||||||||||||| ||| ||||||| || ||||||||
Sbjct 1671 ACAGGTCCATAGTGGATTTTTGAGTGCATACGATTCAGTACGGATAAGGATAATATCGCT 1730
Query 2156 GCTCAAAATGACAATTGGCTACATAGACGATGTTACTGAGCGTGAAGATAAATGGCATGT 2215
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1731 GCTCAAAATGGCAATTGGCTACATAGACGATGTTGCCGAGCGTGAAGATAAATGGCATGT 1790
Query 2216 TTATGTGACTGGTCATAGCTTGGGTGGCGCATTAGCTACACTCTTGGCTCTCGAACTTTC 2275
||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||
Sbjct 1791 TTATGTGACTGGTCATAGCTTGGGTGGTGCATTAGCCACACTCCTGGCTCTTGAACTTTC 1850
Query 2276 GTCCAGCCAATTAGCTAAACGTGGGGCAATCACTGTTACCATGTACAACTTTGGATCTCC 2335
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1851 TTCCAGCCAATTAGCTAAACGTGGAGCAATCACTGTTACCATGTACAATTTTGGATCTCC 1910
Query 2336 AAGAGTAGGCAACAAACAATTTGCTGAAATTTATAATCAGAAAGTAAAAGACAGCTGGAG 2395
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1911 AAGAGTAGGCAACAAACAATTTGCTGAAATTTATAACCAGAAAGTAAAAGACAGCTGGAG 1970
Query 2396 AGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGT 2455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 AGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGT 2030
Query 2456 TGCTCATCCTGTTTATCTCAGTGCTGGAGATGTGGAGGATATTGAGTTCCAGAAAGATGG 2515
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2031 TGCTCATCCTGTTTATCTCACTGCTGGAGATGTGGAGGATATTGAGTTCCAGAAAGATGG 2090
Query 2516 TTATCATGCTGAGGTGATTGGCGAAGCGACACCCGATATTCTTGTTAGTAGATTTATGAA 2575
|||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 2091 TTATAATGCTGAGGTGATTGGGGAAGCCACACCTGATATTCTTGTTAGTAGATTTATGAA 2150
Query 2576 AGGTGAGAAGGAACTCGTTGAGAAGATACTTCAAACGGAAATTAAAATATTCAATGCACT 2635
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 2151 AGGTGAGAAGGAACTCGTTGAGAAAATCCTTCAAACTGAAATTAAAATATTCAATGCACT 2210
Query 2636 TCGTGATGGAAGTGCCCTTATGCAGCACATGGAGGATTTCTATTACATCACATTGTTAGA 2695
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2211 TCGTGATGGAAGTGCCCTTATGCAGCACATGGAGGATTTCTATTACATCACACTGTTAGA 2270
Query 2696 GAGTGTGAAGTTATATTACAAAACTGTTGAAGATCCGAAAGGCGTTGAAAGTACTACTAT 2755
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2271 GAGTGTGAAGTTATATTACAAAACTGTTGAAGATCCGAAAGGCGTTGAAAATACTACTAT 2330
Query 2756 CCAATCAGTGGGAGAGAGCTAAGTGAGAGCATGTAGTGGCTCGCTTCAGCTGTATAGGAT 2815
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 2331 CCAATCAGTGGGAGAGAGCTAAGTGAGAGCATGTAGTGGCTCGCTCCGGCTATATAGGAT 2390
Query 2816 TCACACTGTATACTATATACAAGAGACAAGCATCCATTGTAATTATTTTATAGTGATCTG 2875
||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391 TCACATTGTATATTATTTACAAGAGACAAGCATCCATTGTAATTATTTTATAGTGATCTG 2450
Query 2876 TGGTTCAGTCGTGTAAACTTAAACGTAGACATGGTATCAAAAGGGGACAAGATGGTTGGA 2935
|||||||||| ||||||||||||| |||||| | |||||||||||||||||| |||||||
Sbjct 2451 TGGTTCAGTCCTGTAAACTTAAACATAGACACGATATCAAAAGGGGACAAGAAGGTTGGA 2510
Query 2936 ATTTATCACAATGCGTATAGATGA 2959
|||||| | |||| ||||||||||
Sbjct 2511 ATTTATTAAAATGTGTATAGATGA 2534
Score = 363 bits (196), Expect = 6e-99
Identities = 245/269 (91%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 87 ATGACATCTCTGCAATTACACTTCTCTGTTCACTTCCTCCGTCCAAAACACCGTCTCCGC 146
||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTTCTCTGCAATTACACTGCTCTCTTCACTTCCTCCGTCCAAAACACCGTCTCCGC 60
Query 147 TACTCTCCTATCTTCAATACCCGCACCTTCAACTTTCCCGGGAAAATCACTTTCAGACTC 206
|||||||||||||||| | ||||||||||| |||||||||| ||||||| ||||||| ||
Sbjct 61 TACTCTCCTATCTTCACTCCCCGCACCTTCCACTTTCCCGGTAAAATCAATTTCAGAATC 120
Query 207 AGAGCTAAACCTAATTCGCT-CCGTTGCTTCGCTCAATCAGAAACGAAGGAAGTAAGTTT 265
| ||| ||||||||||| || |||||||||| ||||||| || ||||||||||||||||
Sbjct 121 AAAGCCAAACCTAATTC-CTTCCGTTGCTTCACTCAATCGGATGCGAAGGAAGTAAGTTT 179
Query 266 ACCTGAGAAAGATGAACGTTCTCCGTTCGATATCAATCTCGCCGTTATTCTCGCTGGTTT 325
| |||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 180 ATCTGAGAAAGAAGAACGATCTCCGTTTGACATCAATCTCGCCGTTATCCTCGCTGGTTT 239
Query 326 TGCTTTCGAATCCTACGCTTCACCTCCGG 354
||||||||||||||| |||||||||||||
Sbjct 240 TGCTTTCGAATCCTATGCTTCACCTCCGG 268
Score = 255 bits (138), Expect = 1e-66
Identities = 148/153 (97%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 688 GGACAAAAGAGCCGAAATGGAACGAAGACTTTGTTTTTAATATCAAGCTGCCTCCTGCAA 747
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 335 GGACAAAAGAGCCAAAATGGAACGAAGACTTTGTTTTTAATATCAAGCTACCTCCTGCAA 394
Query 748 AAAAGATAGAGATTGCAGCTTGGGATGCAAACCTTGTTACCCCGCATAAACGTATGGGGA 807
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 395 AAAAGATAGAGATTGCAGCTTGGGATGCAAACCTTGTTACCCCACATAAACGGATGGGGA 454
Query 808 ATTCCGAAATCAACCTGGAATCCGTTTGTGATG 840
||||||||||||||||||||| |||||||||||
Sbjct 455 ATTCCGAAATCAACCTGGAATGCGTTTGTGATG 487
Score = 122 bits (66), Expect = 1e-26
Identities = 68/69 (99%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 595 GGGAACGAGTGATCCTTATGTGGTGATGGATTTGGATGGTCAGGTTGCTAAAAGCAAAAC 654
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 267 GGGAACGAGTGATCCTTATGTTGTGATGGATTTGGATGGTCAGGTTGCTAAAAGCAAAAC 326
Query 655 CAAATGGGG 663
|||||||||
Sbjct 327 CAAATGGGG 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112175771525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5