BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13560.1
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493562 jgi|Araly1|493562|fgenesh2_kg.7__2995__AT4G13560.1 861 0.0
> Ahg493562 jgi|Araly1|493562|fgenesh2_kg.7__2995__AT4G13560.1
Length=578
Score = 861 bits (466), Expect = 0.0
Identities = 544/580 (94%), Gaps = 12/580 (2%)
Strand=Plus/Plus
Query 1 ATCAATCAAAGCTAAAAGAACTTATTCTCTCACAAACTTCAAATCCTCATC-ATCCTTTT 59
|||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||
Sbjct 1 ATCAATCAAAGCTAAAAGAACTTA--CTCTCACAAACTTCAAATCCTCCTCTATCCCTTT 58
Query 60 TGAATCATCAATCATGTCGCAACAACAATTCAACGCCGGACAGAACAGAGGCCAAGCTCA 119
|||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 59 TGAATCATTAATCATGTCGCAACAACAATTCAACGCTGGCCAGAACAGAGGCCAAGCTCA 118
Query 120 AGAGAAAGCTGAGCAATGGACCGAGTCTGCGAAGCAAACCGCACAGTCCGCATGTGACAA 179
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 119 AGAGAAAGCTGAGCAATGGACCGAGTCCGCGAAGCAAACCGCACAGTCCGCACGTGATAA 178
Query 180 AACTGCTGATTTGACACAATCAGCACGTGACAAGGCTGCAGATTTGACACAATCAGCTCG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GACTGCTGATTTGACACAATCAGCACGTGACAAGGCTGCAGATTTGACACAATCAGCTCG 238
Query 240 TGACAAAACCGCTGATGGATCTCATTCCGCTAACAAATCTGCACAACATAACCAGGAACA 299
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGACAAGTCCGCTGATGGATCTCATTCCGCTAACAAATCTGCACAACATAACCAGGAACA 298
Query 300 AGCCGCTGGTTTATTCGGCCAGACCGGTGAATCAGTGAAGAACATGGCTCAGGGTGCTCT 359
||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 299 AGCTGCTGGTTTATTTGGCCAGACCGGTGAATCAGTTAAAAACATGGCTCAAGGTGCTCT 358
Query 360 TGACGGTGTGAAGAACAGTCTTGGCATGAACGAGAAGAAATGAGAATTT-A-TACT--T- 414
||| ||||||||||||||||||||||||||||||||||||||||||| | | |||| |
Sbjct 359 TGATGGTGTGAAGAACAGTCTTGGCATGAACGAGAAGAAATGAGAATATGAATACTCATA 418
Query 415 ---CTCAACTATTTTATTTAAAATATTTATGAATAATTTCTTGTTTTG-GAAGTTTTGGG 470
|||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 419 TTTCTCACCTATTTTATTTAAAATATATATGAATAATTTCTTGTTTTTTGAAATTTTGGG 478
Query 471 TTTCTCCAAATTATGTTTGTAATAAGATTATTTGTTTTGAAAGGTTTTGTGATCATGTAA 530
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 479 TTTCTCCAAATTATGTTTGTAATAAGATTATTTGTTTTGAAAGATTTTGTGATCATGTGA 538
Query 531 TCCGAAATCTGAGATGTAATAAGATGTTGTAACATCACAG 570
||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCCGAAATCTGAGATGTAATAAGATGTTGTAACATCACAG 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22111291860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5