BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13570.2
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947103 jgi|Araly1|947103|scaffold_703332.1 361 5e-99
Ahg891031 jgi|Araly1|891031|Al_scaffold_0007_3017 333 1e-90
Ahg891045 jgi|Araly1|891045|Al_scaffold_0007_3031 327 5e-89
Ahg891034 jgi|Araly1|891034|Al_scaffold_0007_3020 326 2e-88
Ahg947092 jgi|Araly1|947092|scaffold_703321.1 322 2e-87
Ahg891036 jgi|Araly1|891036|Al_scaffold_0007_3022 311 5e-84
Ahg891032 jgi|Araly1|891032|Al_scaffold_0007_3018 174 7e-43
Ahg891052 jgi|Araly1|891052|Al_scaffold_0007_3038 145 6e-34
> Ahg947103 jgi|Araly1|947103|scaffold_703332.1
Length=568
Score = 361 bits (195), Expect = 5e-99
Identities = 256/286 (90%), Gaps = 2/286 (1%)
Strand=Plus/Plus
Query 173 GATTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTG 232
|||||| ||||| ||||||||||| |||||| |||| || ||||||||||||| |||| |
Sbjct 280 GATTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAG 339
Query 233 TTGGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTC 292
||||||| |||| || |||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 340 TTGGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTC 399
Query 293 TTCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATT 352
|| ||||||| | |||| | ||||||||| ||||||||||||||||||||||| ||||||
Sbjct 400 TTGAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATT 459
Query 353 TGCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTG 412
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 460 TGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTG 519
Query 413 GAGGAAGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 456
||||| ||||||||||||||| ||||||||||| |||| ||||||
Sbjct 520 GAGGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 565
> Ahg891031 jgi|Araly1|891031|Al_scaffold_0007_3017
Length=267
Score = 333 bits (180), Expect = 1e-90
Identities = 238/267 (89%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234
|||| | ||| ||||||||||| |||||| |||| || ||||||| ||||| |||| |||
Sbjct 1 TTTCCACTGGGTCGTATTCACAGGCAACTCAAGACCAAAGTTTCTCCACATGGTAGAGTT 60
Query 235 GGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCTT 294
||||| |||| || |||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 61 GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 120
Query 295 CAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG 354
| ||||| | |||| | ||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 121 GACTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCAAGACATTTG 180
Query 355 CAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGA 414
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 181 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA 240
Query 415 GGAAGTGTGATCCCTCACATCCACTAG 441
||| |||||||||||||||||||||||
Sbjct 241 GGAGGTGTGATCCCTCACATCCACTAG 267
> Ahg891045 jgi|Araly1|891045|Al_scaffold_0007_3031
Length=267
Score = 327 bits (177), Expect = 5e-89
Identities = 238/268 (89%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234
|||| ||||| ||||||||||| |||| | |||| || ||||||||||||| |||| |||
Sbjct 1 TTTCCAGTGGGTCGTATTCACAGGCAAGTCAAGACCATAGTTTCTGCACATGGTAGAGTT 60
Query 235 GGTGCGACTGA-TGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCT 293
||||| ||| | || |||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 61 GGTGCCACT-ACTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCT 119
Query 294 TCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTT 353
| ||||||| | |||| | ||||||||| | ||| |||||||||||||||||||||||||
Sbjct 120 TGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAACTGAAGAGGATAACTCCAAGGCATTT 179
Query 354 GCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGG 413
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 180 GCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGG 239
Query 414 AGGAAGTGTGATCCCTCACATCCACTAG 441
|||| ||||||||||||||| ||| |||
Sbjct 240 AGGAGGTGTGATCCCTCACACCCAGTAG 267
> Ahg891034 jgi|Araly1|891034|Al_scaffold_0007_3020
Length=297
Score = 326 bits (176), Expect = 2e-88
Identities = 236/266 (89%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234
|||| ||||| ||||||||| | |||||| |||| ||||||||||||| || |||| |||
Sbjct 31 TTTCCAGTGGTTCGTATTCATAGGCAACTCAAGACCAGAGTTTCTGCATATGGTAGAGTT 90
Query 235 GGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCTT 294
||||| ||| || |||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 91 GGTGCCACTTCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 150
Query 295 CAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG 354
||||||| | ||| | ||||||||| | |||||||||||||||||||||||||||||
Sbjct 151 GAGTTGGCTGGCAACGCGAGCAAAGATCTGGAAGTGAAGAGGATAACTCCAAGGCATTTG 210
Query 355 CAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGA 414
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 211 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTCCTGGA 270
Query 415 GGAAGTGTGATCCCTCACATCCACTA 440
| | ||||||||||||||||||||||
Sbjct 271 GTAGGTGTGATCCCTCACATCCACTA 296
> Ahg947092 jgi|Araly1|947092|scaffold_703321.1
Length=553
Score = 322 bits (174), Expect = 2e-87
Identities = 250/286 (87%), Gaps = 8/286 (3%)
Strand=Plus/Plus
Query 173 GATTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTG 232
|||||| ||||| ||||||||||| |||||| |||| || ||||||||||||| |||| |
Sbjct 271 GATTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAG 330
Query 233 TTGGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTC 292
||||||| | || || |||||||| | |||||||||||||||| | ||| | ||||||
Sbjct 331 TTGGTGCCAATGCTGATGTCTACACGGCTTCAATCCTTGAATA-C---CTA-A-AGGTTC 384
Query 293 TTCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATT 352
|| ||||||| | |||| | ||||||||| | ||||||||||||||||||||| ||||||
Sbjct 385 TTGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCATGGCATT 444
Query 353 TGCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTG 412
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 445 TGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTG 504
Query 413 GAGGAAGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 456
||||| ||||||||||||||| ||||||||||| |||| ||||||
Sbjct 505 GAGGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 550
Score = 195 bits (105), Expect = 6e-49
Identities = 139/155 (90%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 313 AGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGA 372
||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 AGCAAAGATCTGAAAGTGAAGAGGATTACTCCAAGGCATTTGCAGTTGGCGATCAGAGGA 179
Query 373 GATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGAGGAAGTGTGA-TCCCTCA 431
||||| ||||||| ||||||||||||||||||||| ||||||| |||| | | |||||
Sbjct 180 GATGAGGAGCTTGTGACACTCATCAAAGGAACAATTGCTGGAGGAGGTGT-ACTGCCTCA 238
Query 432 CATCCAC-TAGTCTCATCAACAAAACAACCAAGGA 465
||||||| | |||||||||||||| | ||||||||
Sbjct 239 CATCCACAT-GTCTCATCAACAAACCCACCAAGGA 272
> Ahg891036 jgi|Araly1|891036|Al_scaffold_0007_3022
Length=402
Score = 311 bits (168), Expect = 5e-84
Identities = 216/240 (90%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 201 ACTTAAGAACAGAGTTTCTGCACATAGTAGTGTTGGTGCGACTGATGTTGTCTACATGAC 260
||| |||| |||||||||||||||| |||| ||| |||| |||| || |||||||| | |
Sbjct 162 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTCGTGCCACTGCTGATGTCTACACGGC 221
Query 261 TTCAATCCTTGAATACCTAACTACAGAGGTTCTTCAGTTGGCCGAAAACACTAGCAAAGA 320
|||||||||||||||| |||||||| |||||||| ||||||| | |||||| ||||||||
Sbjct 222 TTCAATCCTTGAATACATAACTACAAAGGTTCTTGAGTTGGCTGGAAACACGAGCAAAGA 281
Query 321 TTTAAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAAGA 380
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 282 TCTGGAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAGGA 341
Query 381 GCTTGACACACTCATCAAAGGAACAATTATTGGAGGAAGTGTGATCCCTCACATCCACTA 440
|||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 342 GCTTGACACACTCATCAAAGGAACAATTGCTGGAGTAGGTGTGATCCCTCACATCCACTA 401
> Ahg891032 jgi|Araly1|891032|Al_scaffold_0007_3018
Length=333
Score = 174 bits (94), Expect = 7e-43
Identities = 135/155 (87%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 201 ACTTAAGAACAGAGTTTCTGCACATAGTAGTGTTGGTGCGACTGATGTTGTCTACATGAC 260
||| |||| |||||||||||||||| |||| |||| ||| |||| || |||||||| | |
Sbjct 177 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTGATGCCACTGCTGATGTCTACACGGC 236
Query 261 TTCAATCCTTGAATACCTAACTACAGAGGTTCTTCAGTTGGC-CGAAAACACTAGCAAAG 319
||||||||||||||||||||||||| |||||||| ||||||| ||| | | |||||||
Sbjct 237 TTCAATCCTTGAATACCTAACTACAAAGGTTCTTGAGTTGGCTGGAAGA-GCGAGCAAAG 295
Query 320 ATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG 354
|| | ||||||||||||||||||||||||||||||
Sbjct 296 ATCTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 330
> Ahg891052 jgi|Araly1|891052|Al_scaffold_0007_3038
Length=276
Score = 145 bits (78), Expect = 6e-34
Identities = 101/112 (90%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 580 ACATCATAATTTTACGTCTCATCTCGTAAACGATAGGAGAAGTTCTTTGCTCCTAGAGTT 639
|||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |
Sbjct 244 ACATCATAATTTTACGTCTCATCTCGTAGATGATAGGAGAAGTCCTTTGCTCCTAGAGGT 185
Query 640 TTG-GTGCTAAACAATTCACAGTGATATGCATTCCATGTGGCTCCTTAAAAC 690
| |||||| |||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 184 G-GAGTGCTATACAATTCACAATGACATGCAATCCATGTGGCTCCTTAAAAC 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5