BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13580.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947071 jgi|Araly1|947071|scaffold_703300.1 1190 0.0
Ahg479933 jgi|Araly1|479933|fgenesh2_kg.3__2634__AT3G24020.1 651 0.0
> Ahg947071 jgi|Araly1|947071|scaffold_703300.1
Length=778
Score = 1190 bits (644), Expect = 0.0
Identities = 732/776 (94%), Gaps = 0/776 (0%)
Strand=Plus/Plus
Query 34 CAAAACAAGCATCCTCCAATATGATGAAACAATCACCATTCTCACTTTTAACATCAATCT 93
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3 CAAAACAAATATCCTCCAATATGATGAAACAATCACCATCCTCACTTTCAACATCAATCT 62
Query 94 TTCTCATAGCTGCTCTTTTTACTGCAACTACCGCACTCGATCCTGCACCCGAAGACCCGA 153
||||||||| |||||| ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 63 TTCTCATAGTTGCTCTATTTACTGCAACAACTGCACTCGATCCTGCGCCCGAAGACCCGA 122
Query 154 TTTTTGAATTGTACATGCACGATATACTTGGGGGAAGCAGTCCCACAGCAAGACCCATTA 213
|||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||| ||||
Sbjct 123 TTTTCGAATTGTACATGCACGACATACTTGGCGGAAGTAGTCCCACCGCGAGACCAATTA 182
Query 214 CGGGTTTGCTTGGAAACATCTACAACGGTCAAGTACCGTTTGCTAAGCAGATCGGTTTTG 273
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CTGGTTTGCTTGGAAACATCTACAACGGTCAAGTACCGTTTGCTAAGCAGATCGGTTTTG 242
Query 274 TTCCACCGCAAAACGGTGTAGCCATACCCAACGCAAATGGGGCAATGCCAACGGTTAACG 333
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
Sbjct 243 TTCCACCGCAAAACGGTGTTGCCATACCCAATGCAAATGGGGCTTTGCCAACGGTTAATG 302
Query 334 GTATCAACGGTATTCCATTAGGTACTGGTTTGTCTGGAACAGCGTTTTCTGGTCAGAATC 393
|||||||||||||||| |||||||| |||||||| || || |||||||||||||||||||
Sbjct 303 GTATCAACGGTATTCCTTTAGGTACCGGTTTGTCCGGTACTGCGTTTTCTGGTCAGAATC 362
Query 394 TAAATGGGATTCAGACTCAGTTGGGTCCTGATGGTCTGAGTCTTGGGTTTGGAACAATCA 453
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TAAATGGGATTCAGACACAGTTGGGTCCTGATGGTCTGAGTCTTGGGTTTGGAACAATCA 422
Query 454 CGGTGATTGACGACATAATCACATCTGGTCCTGACTTGGGGTCACAACCACTTGGTAAGG 513
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 423 CGGTGATTGATGACATAATCACATCTGGTCCTGACTTGGGGTCACAGCCACTTGGTAAGG 482
Query 514 CTCAAGGTGTTTATGTTGCCAGCTCAGCAGATGGAAGCACGCAGATGATGGCTTTCACAG 573
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 483 CTCAAGGGGTTTATGTTGCCAGCTCAGCAGATGGAAGCACTCAGATGATGGCTTTCACAG 542
Query 574 CTATGCTTGAAGGTGGAGAGTACAATGATAATCTAAATTTCTATGGAATCTATAGGATAG 633
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 543 CTATGCTTGAAGGTGGCGAGTACAATGATAATCTAAATTTCTATGGAATTTATAGGATCG 602
Query 634 GAAGCGCCATGTCACATCTGTCAGTGACTGGAGGAACCGGAAGGTTTAAGAACGCTTGCG 693
||||||||||||| |||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct 603 GAAGCGCCATGTCGCATCTGTCTGTTACTGGAGGAACAGGAAGGTTTAAGAATGCTTGCG 662
Query 694 GATTTGCAGAGGTTAGGCCGTTGATTCCTGCGGGCCAACACTTTGTTGATGGAGCTGAGA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 663 GATTTGCAGAGGTTAGGCCGTTGATTCCTGCGGGCCAACACTTTGTTGATGGAGCAGAAA 722
Query 754 TGCTGTTGAGGATCATTGTCCATCTGAAATACTGAGAATTATGTTTAAAACTTGTG 809
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 723 TGTTGTTGAGGATCATTGTCCATCTGAAATATTGAGAATTATGTTTAAAACTTGTG 778
> Ahg479933 jgi|Araly1|479933|fgenesh2_kg.3__2634__AT3G24020.1
Length=784
Score = 651 bits (352), Expect = 0.0
Identities = 614/740 (83%), Gaps = 20/740 (3%)
Strand=Plus/Plus
Query 54 ATGATGAAACAATCACCATTCTCACTTTTAACAT-CAATCTT-TCTCATAGCTGCTCTTT 111
||||| || ||||||||||||| |||||||| | |||||| | ||| | |||| |
Sbjct 4 ATGATCAAGCAATCACCATTCTTGCTTTTAAC-TGTAATCTTGT-TCACAATTGCT-GTG 60
Query 112 TTACTGCAACTACCGCACTCGATCCTGCACCCGAAGACCCGATTTTTGAATTGTACATGC 171
|| || | | | ||||| ||||||||||| |||||||| ||||| ||| | |||||||
Sbjct 61 TT--TGTAGC-A--GCACTTGATCCTGCACCTGAAGACCCCATTTTCGAACTCTACATGC 115
Query 172 ACGATATACTTGGGGGAAGCAGTCCCACAGCAAGACCCATTACGGGTTTGCTTGGAAACA 231
| ||| ||||||| ||||| || ||||| ||||| || || || |||||||| || ||||
Sbjct 116 ATGATTTACTTGGAGGAAGTAGCCCCACGGCAAGGCCGATCACAGGTTTGCTCGGCAACA 175
Query 232 TCTACAACGGTCAAGTACCGTTTGCTAAGCAGATCGGTTTTGTTCCACCGCAAAACGGTG 291
| |||||||||||||| ||||||||||||||||| ||||| ||| || |||||||||
Sbjct 176 TTTACAACGGTCAAGTTCCGTTTGCTAAGCAGATTGGTTTCACTCCTCCCCAAAACGGTA 235
Query 292 TAGCCATACCCAACGCAAATGGGGCAATGCCAACGGTTAACGGTATCAACGGTATTCCAT 351
|||||||||| || ||||| || ||| | |||||||||||||| ||||||||| | || |
Sbjct 236 TAGCCATACCAAATGCAAACGGCGCACTCCCAACGGTTAACGGCATCAACGGTGTACC-T 294
Query 352 -TAGGTACTGGTTTGTCTGGAACAGCGTTTTCTGGTCAGAATCTAAATGGGATTCAGACT 410
| || || || |||||||| ||||| | ||||| ||||| || |||||||||||||||
Sbjct 295 CTTGGGACAGGCTTGTCTGGTACAGCCTACTCTGGGCAGAACCTGAATGGGATTCAGACT 354
Query 411 CAGTTGGGTCCTGATGGTCTGAGTCTTGGGTTTGGAACAATCACGGTGATTGACGACATA 470
|||||||||||||||||| |||||||||||||||| || || || ||||| || ||||||
Sbjct 355 CAGTTGGGTCCTGATGGTTTGAGTCTTGGGTTTGGTACCATTACCGTGATCGATGACATA 414
Query 471 ATCACATCTGGTCCTGACTTGGGGTCACAACCACTTGGTAAGGCTCAAGGTGTTTATGTT 530
|||||||||||||||||||||| || || || ||||||||||||||||| |||||||||
Sbjct 415 CTCACATCTGGTCCTGACTTGGGTTCGCAGCCGCTTGGTAAGGCTCAAGGAGTTTATGTT 474
Query 531 GCCAGCTCAGCAGATGGAAGCACGCAGATGATGGCTTTCACAGCTATGCTTGAAGGTGGA 590
|| || || |||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 475 GCAAGTTCTGCAGATGGAAGCACACAGATGATGGCTTTCACAGCTATGTTTGAAGGTGGC 534
Query 591 GAGTACAATGATAATCTAAATTTCTATGGAATCTATAGGATAGGAAGCGCCATGTCACAT 650
||||||||||| || || || ||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 535 GAGTACAATGACAACCTCAACTTCTACGGAATTTACAGGATCGGAAGTGCCATGTCGCAT 594
Query 651 CTGTCAGTGACTGGAGGAACCGGAAGGTTTAAGAACGCTTGCGGATTTGCAGAGGTTAGG 710
|| ||||||||||| ||||| || ||||| ||||||||||| || ||||||||||| ||
Sbjct 595 CTATCAGTGACTGGGGGAACAGGTAGGTTCAAGAACGCTTGTGGGTTTGCAGAGGTCAGA 654
Query 711 CCGTTGATTCC-TGCGGGCCAACACTTT-GTTGATGGAGCTGAGATGCTGT--TGAGGAT 766
|| |||||||| | | || || || | | || |||||||| ||| | || | |||||||
Sbjct 655 CCATTGATTCCAT-CAGGTCAGCA-TGTAGTGGATGGAGCAGAG-T-CTTTGCTGAGGAT 710
Query 767 CATTGTCCATCTGAAATACT 786
||||||||||||||| ||||
Sbjct 711 CATTGTCCATCTGAAGTACT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5