BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13590.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947070 jgi|Araly1|947070|scaffold_703299.1 1812 0.0
> Ahg947070 jgi|Araly1|947070|scaffold_703299.1
Length=1125
Score = 1812 bits (981), Expect = 0.0
Identities = 1079/1127 (96%), Gaps = 4/1127 (0%)
Strand=Plus/Plus
Query 148 GTGAATTCTGAA-TAAAAAGATCATGAAGCTCACAAGCTTGAGCAAGAATGCTAATTCCA 206
|||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GTGAATTCAGAACT-AAAAGATCATGAACCTCACAAGCTTGAGCAAGAATGCTAATTCCA 59
Query 207 CAGCAACAGCAGTAACTGTATCTTCAATACAGAAACTCCCGTTTCTGTCTCTGTCTGAAA 266
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 CAGCAACATCAGTAACTGTATCTTCAATACAGAAGCTCCCGTTTCTGTCTCTGTCTGAAT 119
Query 267 CTTTGCCTTGTCCGAAGAGTTCGAGAAAACCCACGTTTCTTCCTTTAAGATGTAGACGGA 326
|||| ||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||
Sbjct 120 CTTTACCTTGTCCGAAGATTTCGACAAACCCCAATTTTCTTCCTTTAAGATGTAGACGGA 179
Query 327 GACCAAAGTTGGATTTGCTCTGGGGAAAATTTAGAGTTCGTGCATCAGATGCTGGTGTTG 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GACCAAAGTTGGATTTGCTCTGGGGAAAATTTAGAGTTCGTGCATCAGATGCTGGTGTTG 239
Query 387 GATCTGGGAGTTATAGTGGTGGAGAAGAGGATGGATCTCAGAGTAGTTCTCTTGATCAGT 446
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||| |
Sbjct 240 GATCTGGGAGCTATAGTGGTGGAGAAGAAGATGGATCTCAAAGTAGTTCTCTTCATCAAT 299
Query 447 CTCCTGCCACTTCATCAGAAAGCTTAAAACCTCGAGGGCCATTTCCTTATTCTTTGTCAA 506
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 CTCCTACCACTTCATCAGAAAGCTTAAAACCTCGAGGACCATTTCCTTATTCTTTGTCAA 359
Query 507 TAGCGCTTGTACTACTGAGTTGTGGTTTGGTATTTTCTCTTATCACTTTTGTGAAAGGAG 566
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 360 TAGCGCTTGTACTACTGAGTTGCGGTTTGGTATTTTCTCTAATCACTTTTGTGAAAGGAG 419
Query 567 GACCATCTTCAGTTTTAGCAGCAGTAGCAAAGTCAGGCTTCACAGCAGCCTTCTCACTCA 626
|||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 420 GACCATCTTCAGTTCTAGCAGCAGTAGCAAAGTCAGGTTTCACAGCAGCCTTTTCACTGA 479
Query 627 TATTTGTTTCTGAGATTGGAGACAAGACATTTTTCATTGCTGCTTTGTTGGCCATGCAGT 686
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 TATTTGTTTCTGAGATTGGAGATAAGACATTTTTCATTGCTGCTTTGTTGGCCATGCAGT 539
Query 687 ATGAGAAAACACTGGTCCTTTTAGGTTCAATGGGGGCTTTATCTTTGATGACTATCTTAT 746
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 540 ATGAGAAAACACTGGTCCTTTTAGGTTCAATGGGAGCTTTATCTTTAATGACTATCTTAT 599
Query 747 CAGTTGTTATTGGGAAGATATTTCAATCCGTGCCTGCTCAGTTCCAAACGACACTACCGA 806
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 600 CAGTTGTTATTGGGAAGATATTTCAGTCCGTGCCTGCTCAATTCCAGACGACACTACCGA 659
Query 807 TAGGAGAATATGCTGCAATTGCGCTTCTCATGTTTTTTGGATTGAAATCCATTAAAGATG 866
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 660 TAGGAGAATATGCTGCGATTGCGCTTCTCATGTTCTTTGGATTGAAATCCATTAAGGATG 719
Query 867 CATGGGATCTTCCACCAGTGGAAGCCAAGAATGGTGAGGAAACTGGTATAGAACTTGGTG 926
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CATGGGATCTTCCACCGGTGGAAGCCAAGAATGGTGAGGAAACTGGTATAGAACTTGGTG 779
Query 927 AATACTCCGAAGCTGAGGAACTCGTGAAAGAAAAGGCGTCCAAAAAGCTCACAAACCCAC 986
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 780 AATACTCTGAAGCTGAGGAGCTCGTGAAAGAAAAGGCGTCTAAAAAGCTCACAAACCCAC 839
Query 987 TTGAAATCCTCTGGAAGTCATTCAGCCTCGTGTTCTTTGCGGAATGGGGAGATCGATCAA 1046
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 840 TTGAAATCCTCTGGAAATCATTCAGCCTCGTGTTCTTTGCGGAATGGGGAGACCGATCAA 899
Query 1047 TGCTTGCTACTGTTGCGCTTGGTGCTGCACAGTCTCCATTGGGAGTTGCGAGCGGAGCTA 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 TGCTTGCTACTGTTGCGCTTGGTGCTGCACAGTCTCCATTGGGAGTTGCGAGCGGCGCTA 959
Query 1107 TTGCTGGACACTTAGTAGCAACAGTGCTTGCAATCATGGGCGGCGCGTTCCTTGCCAACT 1166
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 TTGCTGGACACTTAGTTGCAACAGTGCTTGCAATCATGGGTGGCGCGTTCCTTGCCAACT 1019
Query 1167 ATATCTCTGAGAAACTGGTGGGCTATGTTGGG-GGAGCTCTCTTCTTAGTTTTTGCTGCA 1225
|||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1020 ATATATCTGAGAAACTGGTGGGCTATGT-GGGTGGAGCTCTCTTCTTAGTTTTTGCTGCA 1078
Query 1226 GCCACATTCTTTGGAGTGTTCTGAGCTGAGTGAACGGTGTTTGTTCC 1272
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 GCCACATTCTTTGGAGTGTTCTAAGCTGAGTGAACGGTGTTTGTTCC 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5