BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13600.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg493553 jgi|Araly1|493553|fgenesh2_kg.7__2986__AT4G13600.1 460 4e-129 > Ahg493553 jgi|Araly1|493553|fgenesh2_kg.7__2986__AT4G13600.1 Length=549 Score = 460 bits (249), Expect = 4e-129 Identities = 283/300 (94%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 115 atggctctctgtctccaaactctctccttcctcctccttcttctcttccgttcctccGCT 174 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTCTCTGTCTCCAATCTCTCTCCTTCCTCCTCCTTCTTCTCTTCCGTTCCTCCGCT 60 Query 175 GCGATGTGGTGCGTTGCTCGGTTCGATGTTACGAGCCAAGCGCTTCAGGCGGCTCTAGAC 234 |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 61 GCGATGTGGTGCGTTGCTCGGTTCGATGTTACAAGCCAGGCGCTCCAGGCGGCTCTAGAC 120 Query 235 TACGCATGTGCCGCTGGAGCTGACTGTGCTCCAATCCAACCCAATGGTCTCTGTTTTCTC 294 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 121 TACGCATGCGCCGCTGGAGCCGACTGTGCTCCAATCCAACCCAATGGTCTCTGTTTCCTC 180 Query 295 CCTAACACCGTTCAGGCACACGCATCTTACGCTTTCAATAGCTACTTCCAACGTGCAGCC 354 ||||| || |||||||| ||||||||||| ||||||||||||||||| || |||||||| Sbjct 181 CCTAATACTGTTCAGGCTCACGCATCTTATGCTTTCAATAGCTACTTTCAGCGTGCAGCT 240 Query 355 ATGGCTCCTGGCTCATGTAACTTCGCTGGCACATCCACTATCGCCAAAACCGATCCTAGT 414 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 241 ATGGCTCCTGGCTCATGTAACTTCGCTGGCACATCCACCATCGCAAAAACTGATCCTAGT 300 Score = 381 bits (206), Expect = 4e-105 Identities = 237/251 (94%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 447 TAACGCTGGAGGGTCAGCTTCAACTACCACAGTGGGAGGAACGCCGTCAACAACCGTCGG 506 |||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||| Sbjct 303 TAACGCTGGAGGGTCAGCTTCAACTACCACGGCGGGAGGAACGCCGACAACAACCGCCGG 362 Query 507 AAACAGCCCAATGACGACATTGAGGCCACCGTCTGGCACCACGACATCACCGTTTGGAAT 566 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 363 AAACAGCCCAATGACGACATTGAGGCCACCGTCTGGCACCACGACATCACCATTTGGAAT 422 Query 567 AGGTGGCGGTGGGCTTAATCCACAAGGAACCACTACTACAACTAACACCGATGAATCTGG 626 |||||||||||| ||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 423 AGGTGGCGGTGGACTTAATCCACAAGGAACCACTAC-A-A-CTAACACCGATGAATCTGG 479 Query 627 ATCTTATATAATAAACAAGAGTA-CTGTCTCTATAGCTTTATTTGTGGCCTTACTGTTGT 685 | ||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||| Sbjct 480 AGCTTATATAATAAACAAGAGTATC-GTCTCTATAGCTTTATTGGTGGCCTTACTTTTGT 538 Query 686 GGTTTATATAG 696 ||||||||||| Sbjct 539 GGTTTATATAG 549 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5