BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13600.1

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493553 jgi|Araly1|493553|fgenesh2_kg.7__2986__AT4G13600.1         460    4e-129


> Ahg493553 jgi|Araly1|493553|fgenesh2_kg.7__2986__AT4G13600.1
Length=549

 Score =  460 bits (249),  Expect = 4e-129
 Identities = 283/300 (94%), Gaps = 0/300 (0%)
 Strand=Plus/Plus

Query  115  atggctctctgtctccaaactctctccttcctcctccttcttctcttccgttcctccGCT  174
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTCTCTGTCTCCAATCTCTCTCCTTCCTCCTCCTTCTTCTCTTCCGTTCCTCCGCT  60

Query  175  GCGATGTGGTGCGTTGCTCGGTTCGATGTTACGAGCCAAGCGCTTCAGGCGGCTCTAGAC  234
            |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct  61   GCGATGTGGTGCGTTGCTCGGTTCGATGTTACAAGCCAGGCGCTCCAGGCGGCTCTAGAC  120

Query  235  TACGCATGTGCCGCTGGAGCTGACTGTGCTCCAATCCAACCCAATGGTCTCTGTTTTCTC  294
            |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  121  TACGCATGCGCCGCTGGAGCCGACTGTGCTCCAATCCAACCCAATGGTCTCTGTTTCCTC  180

Query  295  CCTAACACCGTTCAGGCACACGCATCTTACGCTTTCAATAGCTACTTCCAACGTGCAGCC  354
            ||||| || |||||||| ||||||||||| ||||||||||||||||| || |||||||| 
Sbjct  181  CCTAATACTGTTCAGGCTCACGCATCTTATGCTTTCAATAGCTACTTTCAGCGTGCAGCT  240

Query  355  ATGGCTCCTGGCTCATGTAACTTCGCTGGCACATCCACTATCGCCAAAACCGATCCTAGT  414
            |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct  241  ATGGCTCCTGGCTCATGTAACTTCGCTGGCACATCCACCATCGCAAAAACTGATCCTAGT  300


 Score =  381 bits (206),  Expect = 4e-105
 Identities = 237/251 (94%), Gaps = 5/251 (2%)
 Strand=Plus/Plus

Query  447  TAACGCTGGAGGGTCAGCTTCAACTACCACAGTGGGAGGAACGCCGTCAACAACCGTCGG  506
            |||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||
Sbjct  303  TAACGCTGGAGGGTCAGCTTCAACTACCACGGCGGGAGGAACGCCGACAACAACCGCCGG  362

Query  507  AAACAGCCCAATGACGACATTGAGGCCACCGTCTGGCACCACGACATCACCGTTTGGAAT  566
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  363  AAACAGCCCAATGACGACATTGAGGCCACCGTCTGGCACCACGACATCACCATTTGGAAT  422

Query  567  AGGTGGCGGTGGGCTTAATCCACAAGGAACCACTACTACAACTAACACCGATGAATCTGG  626
            |||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct  423  AGGTGGCGGTGGACTTAATCCACAAGGAACCACTAC-A-A-CTAACACCGATGAATCTGG  479

Query  627  ATCTTATATAATAAACAAGAGTA-CTGTCTCTATAGCTTTATTTGTGGCCTTACTGTTGT  685
            | ||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||
Sbjct  480  AGCTTATATAATAAACAAGAGTATC-GTCTCTATAGCTTTATTGGTGGCCTTACTTTTGT  538

Query  686  GGTTTATATAG  696
            |||||||||||
Sbjct  539  GGTTTATATAG  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25580477307


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5