BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13615.1

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493552 jgi|Araly1|493552|fgenesh2_kg.7__2985__AT4G13615.1         529    6e-150
  Ahg356399 jgi|Araly1|356399|fgenesh1_pg.C_scaffold_8000186           189    1e-47 


> Ahg493552 jgi|Araly1|493552|fgenesh2_kg.7__2985__AT4G13615.1
Length=362

 Score =  529 bits (286),  Expect = 6e-150
 Identities = 342/368 (93%), Gaps = 8/368 (2%)
 Strand=Plus/Plus

Query  1    GATCGCCGATTTATCTTCGTTTCAACCATGACTCGTGGAAGTCAGAGAGAGCGTGACCGT  60
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GATTGCAGATTTATCTTCGTTTCAACCATGACTCGTGGAAGTCAGAGAGAGCGTGACCGT  60

Query  61   GAAAGAGCTGCCGCTCGTGCTGGTGGAAAGGGTAAGAATGGTGACGATGGTTTGACGCCG  120
            |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  61   GAAAGAGCCGCGGCTCGTGCTGGAGGAAAGGGTAAGAATGGTGACGATGGTTTGACACCG  120

Query  121  GAGCAACGCCGTGAAAGAGATGGGAAAGCATTGCAAGAGAAAGCGGCTAAGAAAGCTGCT  180
            |||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct  121  GAGCAACGTCGTGAAAGAGATGGAAAAGCATTGCAAGAGAAGGCAGCTAAGAAAGCTGCT  180

Query  181  CAAGCTGCAGGTGCGAG-TTCTGGTGGTGCAGCTGGAGGAAAAGGAGCTGCTGCTAAGAA  239
            |||||||||| ||| || ||||||||||| ||||||| | ||||||||||||   |||||
Sbjct  181  CAAGCTGCAGCTGC-AGGTTCTGGTGGTGGAGCTGGAAGTAAAGGAGCTGCT---AAGAA  236

Query  240  GTGATGAT-GATCATTTGGTTTGTCTTTTGAGCATATTGTAGACTTTATGTTTGAAATTG  298
            |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  237  GTGATGATTGATCATTTGGTTTGTGTTTTGAGCATATTGTAGACTTTATGTTTGAAATTG  296

Query  299  GGTTGTTTAGACCTGAAGCTTTGACTCTTGTCTGAAATCCCATTATAATGTCTTTGTGTT  358
            |||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||
Sbjct  297  GGTTGTTTAGACCTGA-GCTTTGACTCTTGTCTGAA-TCCTATTATACTGTCTTTGTGTT  354

Query  359  GAATTTGC  366
            ||| ||||
Sbjct  355  GAAATTGC  362


> Ahg356399 jgi|Araly1|356399|fgenesh1_pg.C_scaffold_8000186
Length=504

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 159/184 (86%), Gaps = 13/184 (7%)
 Strand=Plus/Plus

Query  36   TGGAAGTCAGAGAGAGCGTGACCGTGAAAGAGCTGCCGCTCGTGCTGGTGGAAAGGGTAA  95
            |||||||||||||||||||||||||||||||||  | ||| | | || |  || ||||||
Sbjct  174  TGGAAGTCAGAGAGAGCGTGACCGTGAAAGAGC--C-GCT-G-G-TGAT--AA-GGGTAA  224

Query  96   GAATGGTGACGATGGTTTGACGCCGGAGCAACGCCGTGAAAGAGATGGGAAAGCATTGCA  155
            |||| || || ||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  225  GAATAGTAACAATGGTTTGAAGCCGGAGCAACGCCGTGAAAGAGATGGAAAAGCATTGCA  284

Query  156  AGAGAAAGCGGCTAAGAAAGCTGCTCAAGCTGCAGG-TGCGAG-TTCTGGTGGTGCAGCT  213
            |||||| || | ||||||||||||| ||||||| || ||| || |||| |||||| ||||
Sbjct  285  AGAGAAGGCAGTTAAGAAAGCTGCTGAAGCTGC-GGCTGC-AGGTTCTAGTGGTGGAGCT  342

Query  214  GGAG  217
            ||||
Sbjct  343  GGAG  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13049211438


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5