BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13620.1 Length=1405 Score E Sequences producing significant alignments: (Bits) Value Ahg493551 jgi|Araly1|493551|fgenesh2_kg.7__2984__AT4G13620.1 1788 0.0 > Ahg493551 jgi|Araly1|493551|fgenesh2_kg.7__2984__AT4G13620.1 Length=1364 Score = 1788 bits (968), Expect = 0.0 Identities = 1278/1415 (90%), Gaps = 71/1415 (5%) Strand=Plus/Plus Query 1 ATGATCACACCAAT----ACAC-ACACAACACTCCTTAATTCTCGTATATATAAACATTT 55 |||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGATCACACCAATACACACACAACACAACACTCCTTAATTATCGTATATATAAACATTT 60 Query 56 ATTCTCCACCTATTT-TGTCAAAATTAAGAACAGGCTTCATTCTCTGGACAAA-CACTCa 113 ||||||||| ||||| | ||||||||||| |||||||| ||||||||||||| | ||| Sbjct 61 ATTCTCCACTTATTTCT-TCAAAATTAAG-ACAGGCTTTGTTCTCTGGACAAATC-CTC- 116 Query 114 aaaaacaaacaaaaaaaGGAACATGGAAGATCAGTTTCCTAAAATAGAAACTAGCTTCAT 173 ||| |||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 117 --AAA-AAAC------ATGAACATGGAAGATCAGTTTCCTAAAATAGAAACTAGCTTCAT 167 Query 174 GCACGACAAGCTCTTGTCTTCTGGAATCTACGGGTTCTTGAGTTCTTCGACGCCGCCACA 233 ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||| Sbjct 168 GCACGACAAGCTCTTGTCTTCTGGATTCTACGGGATCTTGAGTTCTTCAACGCCACCACA 227 Query 234 ACTTCTCGGTGTTCCAATATTTTTGGAAGGTATGAAATCTCCTCTTCTTCCTGCTTCTTC 293 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 228 ACTTCTCGGTGTTCCAATATTCTTGGAAGGTATGAAATCTCCTCTTCTTCCTTCTTCTTC 287 Query 294 GACTCCGAGCTACTTTGTGTCGCCTCATGATCATGAGCTCACATCTTCTATTCATCCATC 353 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | Sbjct 288 GACTCCGAGCTACTTTGTGTCGCCTCATGATCATGAGCTCACTTCTTCTATTCATCAACC 347 Query 354 TCCGGTAGCTTCTGTTCCTTGGAACTTTCTAGAATCTTTTCCTCAGTCTCAACATCCTGA 413 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 348 TCCGATAGCTTCTGTTCCTTGGAACTTTCTAGAATCTTTTCCTCAGTCTCAACGTCCTGA 407 Query 414 TCATC-ATCCTTCTAAACCTCCAAACCTTACTTTGTTCCTTAAAGAACCAAAGCTACTAG 472 ||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 408 TCA-CTTTCCTTCTAAACCTCCAAACCTTACTTTGTTCCTTAAAGAACCAAAGCTTCTAG 466 Query 473 AACTTTCTCAATCCGA-AAGCAACATGAGCCCTTACCATAAATACATCCCAAACTCCT-T 530 ||||||||||||| || || ||||||||||||||||||||||||||| ||||||| || | Sbjct 467 AACTTTCTCAATCTGATAA-CAACATGAGCCCTTACCATAAATACATTCCAAACT-CTCT 524 Query 531 TTATCAATCAGACCAAAACAGAAACGAATGGGTAGAGATCAATAAAACTCTAACCAACTA 590 |||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct 525 TTATCAATCAGATCAAAATAGAAACGAGTGGGTAGAGATCAATAAAACCCTAACCAACTA 584 Query 591 TCCCTCGAAAGGTTTTGGAAACTATTGGCTAAGTACCACCAAGACTCAACCCATGAAGTC 650 |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| || Sbjct 585 TCCCTCAAAAGGTTTCGGAAACTATTGGCTAAGTACCACCAAGACTCAGCCCATGAAATC 644 Query 651 AAAAACAAGAAAGGTTGTTCAGACGACGACCCCAACAAAACTGTATAGAGGAGTGAGACA 710 |||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| Sbjct 645 AAAAACAAGAAAGGTTGTCCAGACGACAACACCAACAAAGCTGTATAGAGGAGTGAGACA 704 Query 711 AAGACACTGGGGCAAATGGGTCGCAGAGATTAGGCTTCCAAGGAACAGAACCCGTGTTTG 770 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 705 AAGACACTGGGGCAAATGGGTCGCGGAGATTAGGCTTCCAAGGAACAGAACCCGTGTTTG 764 Query 771 GCTCGGCACTTTTGAAACCGCTGAGCAAGCAGCAATGGCTTACGATACAGCAGCTTATAT 830 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 765 GCTCGGTACTTTTGAAACCGCTGAGCAAGCAGCAATGGCTTACGACACAGCAGCTTATAT 824 Query 831 CCTTCGTGGCGAATTCGCACACCTCAACTTTCCTGATCTTAAACACCAGCTCAAGTCCGG 890 ||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||| Sbjct 825 CCTGCGTGGCGAATTCGCACACCTCAACTTTCCCGACCTAAAACATCAGCTCAAGTCCGG 884 Query 891 TTCTTTGCGATGCATGATCGCCTCACTTTTGGAGTCCAAGATTCAACAGATCTCATCTTC 950 ||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 885 TTCCTTGCGATGCATGATCGCCTCGCTTTTGGAGTCCAAGATTCAACAGATATCCTCTTC 944 Query 951 CCAAGTAAGTAACTCTCCTTCT---CCTCCTCCTCCAAAAGTGGGAACACCGGAGCAAAA 1007 |||||||||||||||||||||| |||||||||||||||||||||| | | |||| ||| Sbjct 945 CCAAGTAAGTAACTCTCCTTCTCCACCTCCTCCTCCAAAAGTGGGAATATCAGAGCCAAA 1004 Query 1008 GAATCATCACATGAAGATGGAGTCAGGAGAAGACGTGATGATGAAGAAACAGAAAAGCCA 1067 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1005 GAATCATCACATGAAGATGGAGTCAGGAGAAGAAGTGATGATGAAGAAACAGAAAATTCA 1064 Query 1068 TAAGGAAGTGATGGAAGGAGATGGTGTACAATTGAGTAGGATGCCTTCTTTGGATATGGA 1127 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1065 TAAGGAAGTGATTGAAGGAGATGGTGTACAATTGAGTAGGATGCCATCTTTGGATATGGA 1124 Query 1128 TCTCATTTGGGATGCTCTCTCATTTCCTCATTCTTCTTGACTTCAAATTAATATTTGTCA 1187 |||||||||||||||||||||| || || ||| || |||| || | || | | Sbjct 1125 TCTCATTTGGGATGCTCTCTCA-TT--TC---CTTATT--CTTC---TT--GACTT-T-A 1169 Query 1188 AACTTATTTTACTTACTTCTACCCTTTTTTATATCAAAAGTTTCCACCAAAGAAAGAAAT 1247 || ||| | || | |||||||||| |||| || ||||||||||| || Sbjct 1170 AA-TTA----A--TA----T----TTTTTTATAT-AAAA-ATT---CCAAAGAAAGATAT 1209 Query 1248 TCATATTATGATG-C------CAAGATTGGTTTGCATTTGGGGTTGAACACATTGTAATT 1300 ||||| ||||||| | |||||||||||| |||||| ||| |||||||||| || Sbjct 1210 TCATAATATGATGCCAAGATTCAAGATTGGTTTTCATTTGTTGTTAAACACATTGTGTTT 1269 Query 1301 CTTCTTACGACCACATAATCAAGTGGTTCTCCtttttttGTCTGCTAATTAATTGTTCTT 1360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1270 TTTCTTACGACCACATAATCAAGTGGTTCTCCTTTTTTTGTCTGCTAATTAATTGTTCTT 1329 Query 1361 TTCTTTGCGGTTACTAGTAACCATAAAATAGAAAA 1395 ||||||||||||||||||||||||||||||||||| Sbjct 1330 TTCTTTGCGGTTACTAGTAACCATAAAATAGAAAA 1364 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52526447855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5