BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13620.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493551 jgi|Araly1|493551|fgenesh2_kg.7__2984__AT4G13620.1 1788 0.0
> Ahg493551 jgi|Araly1|493551|fgenesh2_kg.7__2984__AT4G13620.1
Length=1364
Score = 1788 bits (968), Expect = 0.0
Identities = 1278/1415 (90%), Gaps = 71/1415 (5%)
Strand=Plus/Plus
Query 1 ATGATCACACCAAT----ACAC-ACACAACACTCCTTAATTCTCGTATATATAAACATTT 55
|||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGATCACACCAATACACACACAACACAACACTCCTTAATTATCGTATATATAAACATTT 60
Query 56 ATTCTCCACCTATTT-TGTCAAAATTAAGAACAGGCTTCATTCTCTGGACAAA-CACTCa 113
||||||||| ||||| | ||||||||||| |||||||| ||||||||||||| | |||
Sbjct 61 ATTCTCCACTTATTTCT-TCAAAATTAAG-ACAGGCTTTGTTCTCTGGACAAATC-CTC- 116
Query 114 aaaaacaaacaaaaaaaGGAACATGGAAGATCAGTTTCCTAAAATAGAAACTAGCTTCAT 173
||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 --AAA-AAAC------ATGAACATGGAAGATCAGTTTCCTAAAATAGAAACTAGCTTCAT 167
Query 174 GCACGACAAGCTCTTGTCTTCTGGAATCTACGGGTTCTTGAGTTCTTCGACGCCGCCACA 233
||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||
Sbjct 168 GCACGACAAGCTCTTGTCTTCTGGATTCTACGGGATCTTGAGTTCTTCAACGCCACCACA 227
Query 234 ACTTCTCGGTGTTCCAATATTTTTGGAAGGTATGAAATCTCCTCTTCTTCCTGCTTCTTC 293
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 228 ACTTCTCGGTGTTCCAATATTCTTGGAAGGTATGAAATCTCCTCTTCTTCCTTCTTCTTC 287
Query 294 GACTCCGAGCTACTTTGTGTCGCCTCATGATCATGAGCTCACATCTTCTATTCATCCATC 353
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 288 GACTCCGAGCTACTTTGTGTCGCCTCATGATCATGAGCTCACTTCTTCTATTCATCAACC 347
Query 354 TCCGGTAGCTTCTGTTCCTTGGAACTTTCTAGAATCTTTTCCTCAGTCTCAACATCCTGA 413
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 348 TCCGATAGCTTCTGTTCCTTGGAACTTTCTAGAATCTTTTCCTCAGTCTCAACGTCCTGA 407
Query 414 TCATC-ATCCTTCTAAACCTCCAAACCTTACTTTGTTCCTTAAAGAACCAAAGCTACTAG 472
||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 408 TCA-CTTTCCTTCTAAACCTCCAAACCTTACTTTGTTCCTTAAAGAACCAAAGCTTCTAG 466
Query 473 AACTTTCTCAATCCGA-AAGCAACATGAGCCCTTACCATAAATACATCCCAAACTCCT-T 530
||||||||||||| || || ||||||||||||||||||||||||||| ||||||| || |
Sbjct 467 AACTTTCTCAATCTGATAA-CAACATGAGCCCTTACCATAAATACATTCCAAACT-CTCT 524
Query 531 TTATCAATCAGACCAAAACAGAAACGAATGGGTAGAGATCAATAAAACTCTAACCAACTA 590
|||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 525 TTATCAATCAGATCAAAATAGAAACGAGTGGGTAGAGATCAATAAAACCCTAACCAACTA 584
Query 591 TCCCTCGAAAGGTTTTGGAAACTATTGGCTAAGTACCACCAAGACTCAACCCATGAAGTC 650
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 585 TCCCTCAAAAGGTTTCGGAAACTATTGGCTAAGTACCACCAAGACTCAGCCCATGAAATC 644
Query 651 AAAAACAAGAAAGGTTGTTCAGACGACGACCCCAACAAAACTGTATAGAGGAGTGAGACA 710
|||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 645 AAAAACAAGAAAGGTTGTCCAGACGACAACACCAACAAAGCTGTATAGAGGAGTGAGACA 704
Query 711 AAGACACTGGGGCAAATGGGTCGCAGAGATTAGGCTTCCAAGGAACAGAACCCGTGTTTG 770
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 705 AAGACACTGGGGCAAATGGGTCGCGGAGATTAGGCTTCCAAGGAACAGAACCCGTGTTTG 764
Query 771 GCTCGGCACTTTTGAAACCGCTGAGCAAGCAGCAATGGCTTACGATACAGCAGCTTATAT 830
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 765 GCTCGGTACTTTTGAAACCGCTGAGCAAGCAGCAATGGCTTACGACACAGCAGCTTATAT 824
Query 831 CCTTCGTGGCGAATTCGCACACCTCAACTTTCCTGATCTTAAACACCAGCTCAAGTCCGG 890
||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct 825 CCTGCGTGGCGAATTCGCACACCTCAACTTTCCCGACCTAAAACATCAGCTCAAGTCCGG 884
Query 891 TTCTTTGCGATGCATGATCGCCTCACTTTTGGAGTCCAAGATTCAACAGATCTCATCTTC 950
||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 885 TTCCTTGCGATGCATGATCGCCTCGCTTTTGGAGTCCAAGATTCAACAGATATCCTCTTC 944
Query 951 CCAAGTAAGTAACTCTCCTTCT---CCTCCTCCTCCAAAAGTGGGAACACCGGAGCAAAA 1007
|||||||||||||||||||||| |||||||||||||||||||||| | | |||| |||
Sbjct 945 CCAAGTAAGTAACTCTCCTTCTCCACCTCCTCCTCCAAAAGTGGGAATATCAGAGCCAAA 1004
Query 1008 GAATCATCACATGAAGATGGAGTCAGGAGAAGACGTGATGATGAAGAAACAGAAAAGCCA 1067
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1005 GAATCATCACATGAAGATGGAGTCAGGAGAAGAAGTGATGATGAAGAAACAGAAAATTCA 1064
Query 1068 TAAGGAAGTGATGGAAGGAGATGGTGTACAATTGAGTAGGATGCCTTCTTTGGATATGGA 1127
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1065 TAAGGAAGTGATTGAAGGAGATGGTGTACAATTGAGTAGGATGCCATCTTTGGATATGGA 1124
Query 1128 TCTCATTTGGGATGCTCTCTCATTTCCTCATTCTTCTTGACTTCAAATTAATATTTGTCA 1187
|||||||||||||||||||||| || || ||| || |||| || | || | |
Sbjct 1125 TCTCATTTGGGATGCTCTCTCA-TT--TC---CTTATT--CTTC---TT--GACTT-T-A 1169
Query 1188 AACTTATTTTACTTACTTCTACCCTTTTTTATATCAAAAGTTTCCACCAAAGAAAGAAAT 1247
|| ||| | || | |||||||||| |||| || ||||||||||| ||
Sbjct 1170 AA-TTA----A--TA----T----TTTTTTATAT-AAAA-ATT---CCAAAGAAAGATAT 1209
Query 1248 TCATATTATGATG-C------CAAGATTGGTTTGCATTTGGGGTTGAACACATTGTAATT 1300
||||| ||||||| | |||||||||||| |||||| ||| |||||||||| ||
Sbjct 1210 TCATAATATGATGCCAAGATTCAAGATTGGTTTTCATTTGTTGTTAAACACATTGTGTTT 1269
Query 1301 CTTCTTACGACCACATAATCAAGTGGTTCTCCtttttttGTCTGCTAATTAATTGTTCTT 1360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TTTCTTACGACCACATAATCAAGTGGTTCTCCTTTTTTTGTCTGCTAATTAATTGTTCTT 1329
Query 1361 TTCTTTGCGGTTACTAGTAACCATAAAATAGAAAA 1395
|||||||||||||||||||||||||||||||||||
Sbjct 1330 TTCTTTGCGGTTACTAGTAACCATAAAATAGAAAA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5