BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13630.1
Length=2145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355453 jgi|Araly1|355453|fgenesh1_pg.C_scaffold_7002626 765 0.0
> Ahg355453 jgi|Araly1|355453|fgenesh1_pg.C_scaffold_7002626
Length=1935
Score = 765 bits (414), Expect = 0.0
Identities = 511/558 (92%), Gaps = 6/558 (1%)
Strand=Plus/Plus
Query 1406 CTGAGTGATATAGAACTGAAAGAAAGAGAGGAAGGTGAAACTTTATATGCAGAACTAGTA 1465
||||||||| |||||||||||||||||||||| |||| |||| || | |||||||||||
Sbjct 1381 CTGAGTGATGTAGAACTGAAAGAAAGAGAGGAGGGTGTCACTTCATTTCCAGAACTAGTA 1440
Query 1466 TCAAGAACTAGCGACATTGCTGTTTCTAAGAAGCTTTGTGAGG-ACCCTCACGACATTGA 1524
||||||||||||||||| |||||| ||||||| ||| |||||| | || |||||||||||
Sbjct 1441 TCAAGAACTAGCGACATCGCTGTTACTAAGAATCTTGGTGAGGAATCC-CACGACATTGA 1499
Query 1525 TTGTCATGTACATGACATCCATGTAGTGACTGATGAAGATAACAAGGGGCAACTGAATGT 1584
| | ||||||||||| |||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 1500 TGGCCATGTACATGATATCCATGTAGTGACCGATGAAGATAACAAAGCGCAACTGAATGT 1559
Query 1585 TCCTTCTGACCATGCCACTCAG-GATCTGAAACTGGACAGATCACAAAGTGTTTCAGATA 1643
||||| ||||||||||| | || |||||||||||||| ||||||||||||||||||||||
Sbjct 1560 TCCTTTTGACCATGCCA-TTAGCGATCTGAAACTGGATAGATCACAAAGTGTTTCAGATA 1618
Query 1644 CAAGTTATGCATTTCCACAAGGGAAAAGTAACATGTCTACCAATATGCGAAGAAATTCAA 1703
||||||||| | |||||| |||||||||||||||||| |||||||||| ||||||||||
Sbjct 1619 CAAGTTATGTACTTCCACCTGGGAAAAGTAACATGTCTCCCAATATGCGCAGAAATTCAA 1678
Query 1704 TGTCAGCTATTGACTATGAAAGACTGAAAATAGAGAGTGAAGTTGGGTTGCTGAGAGGTC 1763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1679 TGTCAGCTATTGACTATGAAAGACTGAAAATAGAGAGTGAAGTTGGGTTGCTGAGAGGAC 1738
Query 1764 GGTTAAGAGCTGTACAAAAGGGAAGAGAGAAGATCAGTTTTTCTTCCAAAGATCAGAGCA 1823
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1739 GGTTAAGAGCTGTGCAAAAGGGAAGAGAGAAGATCAGTTTCTCTTCCAAAGAACAGAGCA 1798
Query 1824 AATCGCAGGTACAGCGTTGTGGAGATAAAACAAGCCGGTTTTGGGAGGCTAGAAGATCTG 1883
|||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1799 AATCGCAGATACAGCGTCGTGGAGATAAAACAAGCCGGTTTTGGGAGGCCAGAAGATCCG 1858
Query 1884 GACATCTTGA-CTCTTCTAGCCCTTCATCCACAATGGTAAAGGCTATGTCTATGCCACTG 1942
||| | || | ||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 1859 GACCT-TTCAACTCTTCTAGCCCTTCATCCACAATGGTCAAGGCGATGTCTATGACACTT 1917
Query 1943 GACCTGCATAGTGCTTGA 1960
||||||||||||||||||
Sbjct 1918 GACCTGCATAGTGCTTGA 1935
Score = 686 bits (371), Expect = 0.0
Identities = 439/472 (93%), Gaps = 4/472 (1%)
Strand=Plus/Plus
Query 895 TGGTATGGTACAGAGGACGGTTGAGATGTC-AGAACAAGTGCTTGGGGAAGAACGAGCTG 953
||||||| ||| | |||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct 756 TGGTATGACACAAAAGACGATTGAGAT-TCTAGAACAAGTGCTTGCGGAAGAACGAGCTG 814
Query 954 CACGTGCTTCGTTAGCTCTTGAACTTGAGAAAGAGAGAAATGCTGCTGCATCTGCTGCAG 1013
| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 815 CTCATGCTTCATTAGCTCTTGAACTCGAGAAAGAGAGAAATGCTGCTGCATCTGCTGCGG 874
Query 1014 ATGAGGCTTTAGGTATGATATTACGGTTGCAAGAAGA-AAAGGCGTCGATAGAGATGGAA 1072
|||||||||| ||||||||||| ||||| ||||| || ||| ||||| ||||||||||||
Sbjct 875 ATGAGGCTTTGGGTATGATATTGCGGTTACAAGAGGAGAAA-GCGTCAATAGAGATGGAA 933
Query 1073 GCTAGGCAATATCAGCGGATGATAGAAGAAAAGTCTGCTTTTGATGCGGAAGAGATGAGT 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 934 GCTAGGCAATATCAGCGGATGATAGAAGAAAAGTCTGCTTTTGATGCGGAAGAGATGATT 993
Query 1133 ATTCTTAAAGAAATTTTGCTTAGGAGGGAGAGGGAGAAACATTTTCTGGAGAAGGAAGTT 1192
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 ATTCTCAAAGAAATTTTGCTTAGGAGGGAGAGGGAGAAACATTTTCTGGAGAAGGAAGTT 1053
Query 1193 GATACCTACAGGCAAATGTTTCTTGAGACTGAGCAACCTCACAATACTCCAGATTCTAAA 1252
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1054 GATACCTATAGGCAAATGTTTCTTGAGACTGAGCAACCTCACAATACGCCAGATTCAAAA 1113
Query 1253 CCAGCTCAAATCGAAAGATTGCAGACGCCGCAACAGATTACTGAACCATGGGATGACATG 1312
||||||| ||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||
Sbjct 1114 CCAGCTCGAATCGAAAGATTGCAAACGCCACAACAAATTACTGAATCATGGGATGACATG 1173
Query 1313 GAGACTGTGAATGTCTCTTCTGGATTTGAGATCTTCACTAATCAGATGGACA 1364
||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1174 GAGACTGCGGATGTCTCTTTTGGATTTGAGATCTTCACTAATCAGATGGACA 1225
Score = 549 bits (297), Expect = 3e-155
Identities = 470/547 (86%), Gaps = 37/547 (7%)
Strand=Plus/Plus
Query 251 ATGCGTTGCCAGGAGGTAAAATCATGGACATTTAAAGGTTTAGTGGCTGCGTTTATCGAT 310
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1 ATGCGTTGCCAGGAGGTAAGATCATGGACATTTAAAGGTTTAGTGGCTGCGTTTCTTGAT 60
Query 311 CTTTCCGTTGCGTTTTCGCTACTTTGCGCATCGTT-TATCGTTTATGTAACATCGAAGTT 369
||||| |||||||||||||| ||||||||||| || | ||||||||||||||||||||||
Sbjct 61 CTTTCTGTTGCGTTTTCGCTGCTTTGCGCATC-TTCTCTCGTTTATGTAACATCGAAGTT 119
Query 370 CCTCGGTTTATTTGGTTTAGACCTACCATGTCCTTGTGATGGTCTATACAGT--G----- 422
|||||||||||||||||||| ||| |||||||||||||||||| ||| |||| |
Sbjct 120 CCTCGGTTTATTTGGTTTAGCCCTCCCATGTCCTTGTGATGGTTTATTCAGTGAGCCACA 179
Query 423 --AGTGTTTTCAAGAGAGTTTAAGGAATCTTCCGGTTAAAAAGATCTCTTCTGTTCAAAG 480
|||||||||||||||||||| |||||||||| || ||||||||| ||||||||||||
Sbjct 180 TAAGTGTTTTCAAGAGAGTTTAGGGAATCTTCCTGTGAAAAAGATCAGTTCTGTTCAAAG 239
Query 481 ATCTGTTAAAAATAGAACACCTTTTGATTC-A-ATTCTGT-----A--TAA-------TG 524
|||||| | ||||||||| ||||||||||| | || ||| | ||| ||
Sbjct 240 ATCTGTGAGAAATAGAACGCCTTTTGATTCGATTTTATGTAAAGAAGTTAATGGTGGTTG 299
Query 525 -G-TGGAAAGAAGAGAAAATGTGAGCGT-AGACGTGTTCAGTTGGAAGATGAGGTATCTA 581
| |||||||||||| ||| | |||||| || || ||| |||||||||| ||||| ||||
Sbjct 300 TGTTGGAAAGAAGAGGAAAGGAGAGCGTAAG-CGCGTTGAGTTGGAAGAAGAGGTGTCTA 358
Query 582 GTACTACTCCTTCTGTTGGAAAGTTTGAGAATAAGGCTTCAGGGTTCGATCTTTTAACTG 641
| ||||||||||||||||||| ||||| ||||||||||| || ||||||||||| |
Sbjct 359 G---TACTCCTTCTGTTGGAAAGATTGAG---AAGGCTTCAGGTTTTGATCTTTTAACCG 412
Query 642 CGCAAAGTTTGAAAAAAGGAAGCTTTAAAGTTAAGAGTAAGCGGCTTAGCTTCCATAGGT 701
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 413 CGCAAAGTTTGAAAAAAGGAAGCTTTAAAGTTAAGAGTAAGCGGCTCAGCTTCCATAGGT 472
Query 702 CGCCGTATGGTTTCAAGAACCATTACCAAAGTTGTTTAGGCCTTAAGAGCTTTGAGGGAT 761
|||||||||||||||||||||||| ||| || ||||||||| ||||| || ||||||||
Sbjct 473 CGCCGTATGGTTTCAAGAACCATTTTCAAGGTAGTTTAGGCCATAAGAACTCTGAGGGAT 532
Query 762 CATATGA 768
|| ||||
Sbjct 533 CAAATGA 539
Score = 137 bits (74), Expect = 3e-31
Identities = 93/102 (91%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 766 TGATGAAAATGATCCTCTTCTTGTGAACTCCAATGATAGTGGAA-AAGCATTGGAGGATG 824
||||||||||||||||||||||||||| | || |||||||||| || | |||||||| |
Sbjct 567 TGATGAAAATGATCCTCTTCTTGTGAAGTGGAAAGATAGTGGAACAA-CCTTGGAGGACG 625
Query 825 TGTCGTTGCGGAAAAGTGTTTCACTAAGTTCTGTTGGGTGTG 866
|||| |||||||||||||||||||||||||||||||||||||
Sbjct 626 TGTCCTTGCGGAAAAGTGTTTCACTAAGTTCTGTTGGGTGTG 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80713229155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5