BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13630.1 Length=2145 Score E Sequences producing significant alignments: (Bits) Value Ahg355453 jgi|Araly1|355453|fgenesh1_pg.C_scaffold_7002626 765 0.0 > Ahg355453 jgi|Araly1|355453|fgenesh1_pg.C_scaffold_7002626 Length=1935 Score = 765 bits (414), Expect = 0.0 Identities = 511/558 (92%), Gaps = 6/558 (1%) Strand=Plus/Plus Query 1406 CTGAGTGATATAGAACTGAAAGAAAGAGAGGAAGGTGAAACTTTATATGCAGAACTAGTA 1465 ||||||||| |||||||||||||||||||||| |||| |||| || | ||||||||||| Sbjct 1381 CTGAGTGATGTAGAACTGAAAGAAAGAGAGGAGGGTGTCACTTCATTTCCAGAACTAGTA 1440 Query 1466 TCAAGAACTAGCGACATTGCTGTTTCTAAGAAGCTTTGTGAGG-ACCCTCACGACATTGA 1524 ||||||||||||||||| |||||| ||||||| ||| |||||| | || ||||||||||| Sbjct 1441 TCAAGAACTAGCGACATCGCTGTTACTAAGAATCTTGGTGAGGAATCC-CACGACATTGA 1499 Query 1525 TTGTCATGTACATGACATCCATGTAGTGACTGATGAAGATAACAAGGGGCAACTGAATGT 1584 | | ||||||||||| |||||||||||||| |||||||||||||| | |||||||||||| Sbjct 1500 TGGCCATGTACATGATATCCATGTAGTGACCGATGAAGATAACAAAGCGCAACTGAATGT 1559 Query 1585 TCCTTCTGACCATGCCACTCAG-GATCTGAAACTGGACAGATCACAAAGTGTTTCAGATA 1643 ||||| ||||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct 1560 TCCTTTTGACCATGCCA-TTAGCGATCTGAAACTGGATAGATCACAAAGTGTTTCAGATA 1618 Query 1644 CAAGTTATGCATTTCCACAAGGGAAAAGTAACATGTCTACCAATATGCGAAGAAATTCAA 1703 ||||||||| | |||||| |||||||||||||||||| |||||||||| |||||||||| Sbjct 1619 CAAGTTATGTACTTCCACCTGGGAAAAGTAACATGTCTCCCAATATGCGCAGAAATTCAA 1678 Query 1704 TGTCAGCTATTGACTATGAAAGACTGAAAATAGAGAGTGAAGTTGGGTTGCTGAGAGGTC 1763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1679 TGTCAGCTATTGACTATGAAAGACTGAAAATAGAGAGTGAAGTTGGGTTGCTGAGAGGAC 1738 Query 1764 GGTTAAGAGCTGTACAAAAGGGAAGAGAGAAGATCAGTTTTTCTTCCAAAGATCAGAGCA 1823 ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1739 GGTTAAGAGCTGTGCAAAAGGGAAGAGAGAAGATCAGTTTCTCTTCCAAAGAACAGAGCA 1798 Query 1824 AATCGCAGGTACAGCGTTGTGGAGATAAAACAAGCCGGTTTTGGGAGGCTAGAAGATCTG 1883 |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| | Sbjct 1799 AATCGCAGATACAGCGTCGTGGAGATAAAACAAGCCGGTTTTGGGAGGCCAGAAGATCCG 1858 Query 1884 GACATCTTGA-CTCTTCTAGCCCTTCATCCACAATGGTAAAGGCTATGTCTATGCCACTG 1942 ||| | || | ||||||||||||||||||||||||||| ||||| ||||||||| |||| Sbjct 1859 GACCT-TTCAACTCTTCTAGCCCTTCATCCACAATGGTCAAGGCGATGTCTATGACACTT 1917 Query 1943 GACCTGCATAGTGCTTGA 1960 |||||||||||||||||| Sbjct 1918 GACCTGCATAGTGCTTGA 1935 Score = 686 bits (371), Expect = 0.0 Identities = 439/472 (93%), Gaps = 4/472 (1%) Strand=Plus/Plus Query 895 TGGTATGGTACAGAGGACGGTTGAGATGTC-AGAACAAGTGCTTGGGGAAGAACGAGCTG 953 ||||||| ||| | |||| ||||||| || |||||||||||||| |||||||||||||| Sbjct 756 TGGTATGACACAAAAGACGATTGAGAT-TCTAGAACAAGTGCTTGCGGAAGAACGAGCTG 814 Query 954 CACGTGCTTCGTTAGCTCTTGAACTTGAGAAAGAGAGAAATGCTGCTGCATCTGCTGCAG 1013 | | |||||| |||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 815 CTCATGCTTCATTAGCTCTTGAACTCGAGAAAGAGAGAAATGCTGCTGCATCTGCTGCGG 874 Query 1014 ATGAGGCTTTAGGTATGATATTACGGTTGCAAGAAGA-AAAGGCGTCGATAGAGATGGAA 1072 |||||||||| ||||||||||| ||||| ||||| || ||| ||||| |||||||||||| Sbjct 875 ATGAGGCTTTGGGTATGATATTGCGGTTACAAGAGGAGAAA-GCGTCAATAGAGATGGAA 933 Query 1073 GCTAGGCAATATCAGCGGATGATAGAAGAAAAGTCTGCTTTTGATGCGGAAGAGATGAGT 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 934 GCTAGGCAATATCAGCGGATGATAGAAGAAAAGTCTGCTTTTGATGCGGAAGAGATGATT 993 Query 1133 ATTCTTAAAGAAATTTTGCTTAGGAGGGAGAGGGAGAAACATTTTCTGGAGAAGGAAGTT 1192 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 994 ATTCTCAAAGAAATTTTGCTTAGGAGGGAGAGGGAGAAACATTTTCTGGAGAAGGAAGTT 1053 Query 1193 GATACCTACAGGCAAATGTTTCTTGAGACTGAGCAACCTCACAATACTCCAGATTCTAAA 1252 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1054 GATACCTATAGGCAAATGTTTCTTGAGACTGAGCAACCTCACAATACGCCAGATTCAAAA 1113 Query 1253 CCAGCTCAAATCGAAAGATTGCAGACGCCGCAACAGATTACTGAACCATGGGATGACATG 1312 ||||||| ||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| Sbjct 1114 CCAGCTCGAATCGAAAGATTGCAAACGCCACAACAAATTACTGAATCATGGGATGACATG 1173 Query 1313 GAGACTGTGAATGTCTCTTCTGGATTTGAGATCTTCACTAATCAGATGGACA 1364 ||||||| | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1174 GAGACTGCGGATGTCTCTTTTGGATTTGAGATCTTCACTAATCAGATGGACA 1225 Score = 549 bits (297), Expect = 3e-155 Identities = 470/547 (86%), Gaps = 37/547 (7%) Strand=Plus/Plus Query 251 ATGCGTTGCCAGGAGGTAAAATCATGGACATTTAAAGGTTTAGTGGCTGCGTTTATCGAT 310 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 1 ATGCGTTGCCAGGAGGTAAGATCATGGACATTTAAAGGTTTAGTGGCTGCGTTTCTTGAT 60 Query 311 CTTTCCGTTGCGTTTTCGCTACTTTGCGCATCGTT-TATCGTTTATGTAACATCGAAGTT 369 ||||| |||||||||||||| ||||||||||| || | |||||||||||||||||||||| Sbjct 61 CTTTCTGTTGCGTTTTCGCTGCTTTGCGCATC-TTCTCTCGTTTATGTAACATCGAAGTT 119 Query 370 CCTCGGTTTATTTGGTTTAGACCTACCATGTCCTTGTGATGGTCTATACAGT--G----- 422 |||||||||||||||||||| ||| |||||||||||||||||| ||| |||| | Sbjct 120 CCTCGGTTTATTTGGTTTAGCCCTCCCATGTCCTTGTGATGGTTTATTCAGTGAGCCACA 179 Query 423 --AGTGTTTTCAAGAGAGTTTAAGGAATCTTCCGGTTAAAAAGATCTCTTCTGTTCAAAG 480 |||||||||||||||||||| |||||||||| || ||||||||| |||||||||||| Sbjct 180 TAAGTGTTTTCAAGAGAGTTTAGGGAATCTTCCTGTGAAAAAGATCAGTTCTGTTCAAAG 239 Query 481 ATCTGTTAAAAATAGAACACCTTTTGATTC-A-ATTCTGT-----A--TAA-------TG 524 |||||| | ||||||||| ||||||||||| | || ||| | ||| || Sbjct 240 ATCTGTGAGAAATAGAACGCCTTTTGATTCGATTTTATGTAAAGAAGTTAATGGTGGTTG 299 Query 525 -G-TGGAAAGAAGAGAAAATGTGAGCGT-AGACGTGTTCAGTTGGAAGATGAGGTATCTA 581 | |||||||||||| ||| | |||||| || || ||| |||||||||| ||||| |||| Sbjct 300 TGTTGGAAAGAAGAGGAAAGGAGAGCGTAAG-CGCGTTGAGTTGGAAGAAGAGGTGTCTA 358 Query 582 GTACTACTCCTTCTGTTGGAAAGTTTGAGAATAAGGCTTCAGGGTTCGATCTTTTAACTG 641 | ||||||||||||||||||| ||||| ||||||||||| || ||||||||||| | Sbjct 359 G---TACTCCTTCTGTTGGAAAGATTGAG---AAGGCTTCAGGTTTTGATCTTTTAACCG 412 Query 642 CGCAAAGTTTGAAAAAAGGAAGCTTTAAAGTTAAGAGTAAGCGGCTTAGCTTCCATAGGT 701 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 413 CGCAAAGTTTGAAAAAAGGAAGCTTTAAAGTTAAGAGTAAGCGGCTCAGCTTCCATAGGT 472 Query 702 CGCCGTATGGTTTCAAGAACCATTACCAAAGTTGTTTAGGCCTTAAGAGCTTTGAGGGAT 761 |||||||||||||||||||||||| ||| || ||||||||| ||||| || |||||||| Sbjct 473 CGCCGTATGGTTTCAAGAACCATTTTCAAGGTAGTTTAGGCCATAAGAACTCTGAGGGAT 532 Query 762 CATATGA 768 || |||| Sbjct 533 CAAATGA 539 Score = 137 bits (74), Expect = 3e-31 Identities = 93/102 (91%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 766 TGATGAAAATGATCCTCTTCTTGTGAACTCCAATGATAGTGGAA-AAGCATTGGAGGATG 824 ||||||||||||||||||||||||||| | || |||||||||| || | |||||||| | Sbjct 567 TGATGAAAATGATCCTCTTCTTGTGAAGTGGAAAGATAGTGGAACAA-CCTTGGAGGACG 625 Query 825 TGTCGTTGCGGAAAAGTGTTTCACTAAGTTCTGTTGGGTGTG 866 |||| ||||||||||||||||||||||||||||||||||||| Sbjct 626 TGTCCTTGCGGAAAAGTGTTTCACTAAGTTCTGTTGGGTGTG 667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80713229155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5