BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13640.2
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891006 jgi|Araly1|891006|Al_scaffold_0007_2992 1325 0.0
Ahg319110 jgi|Araly1|319110|fgenesh1_pm.C_scaffold_3002126 654 0.0
Ahg930513 jgi|Araly1|930513|scaffold_302970.1 147 3e-34
Ahg888000 jgi|Araly1|888000|Al_scaffold_0133_2 99.0 8e-20
> Ahg891006 jgi|Araly1|891006|Al_scaffold_0007_2992
Length=888
Score = 1325 bits (717), Expect = 0.0
Identities = 833/890 (94%), Gaps = 4/890 (0%)
Strand=Plus/Plus
Query 149 ATGTACTCGGCGATTCGGTCTTCGCTTCCTCTAGATGGCAGCTTGGGAGACTACTCTGAC 208
|||||||| ||||||| || ||||||||||||||||||| ||||||||| |||||||||
Sbjct 1 ATGTACTCAGCGATTCATTCATCGCTTCCTCTAGATGGCAACTTGGGAGAGTACTCTGAC 60
Query 209 GGAACCAATCTTCCCATCGACGCTTGTCTGGTCCTAACCACTGACCCCAAGCCTCGCCTT 268
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 61 GGAACTAATCTTCCCATCGACGCTTGTTTGGTCCTAACCACTGACCCCAAACCTCGCCTT 120
Query 269 CGTTGGACCTCTGAGCTCCATGAAAGATTCGTTGACGCCGTCACTCAGCTCGGCGGACCC 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTTGGACCTCTGAGCTCCATGAAAGATTCGTTGACGCCGTCACTCAGCTCGGCGGACCC 180
Query 329 GACAAAGCAACGCCTAAAACTATAATGAGAACAATGGGAGTGAAGGGTCTCACTCTTTAC 388
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GACAAAGCAACGCCAAAAACTATAATGAGAACGATGGGAGTGAAGGGTCTCACTCTTTAC 240
Query 389 CATCTCAAATCTCATCTTCAGAAATTCCG-CTTGGGGAGGCAATCTTGTAAAGAATCAAT 447
||||| |||||||||||||||||||| || || ||| ||||||||||||||||||||| |
Sbjct 241 CATCTTAAATCTCATCTTCAGAAATTTCGTCTAGGG-AGGCAATCTTGTAAAGAATCAGT 299
Query 448 TGACAACTCTAAGGATGTTTCTTGTGTTGCGGAGAGTCAGGACACTGGTTCATCTTCAAC 507
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 300 TGACAACTCTAAGGATGTTTCTTGTGTTGCGGAGAGTCAGGACACTAGTTCATCGTCAAC 359
Query 508 ATCATCCTTAAGATTGGCTGCTCAAGAACAGAACGAGAGTTACCAGGTCACTGAAGCTTT 567
||||| |||||| ||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 360 TTCATCGTTAAGAATGGCTGCGCAGGAACAGAATGAGAGTTACCAGGTCACCGAAGCTTT 419
Query 568 GCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAGCAACTAGAGTATACGCAGGTGCA 627
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 420 GCGTGCCCAGATGGAAGTCCAAAGAAGATTACACGAGCAATTAGAGTATGCGCAGGTGCA 479
Query 628 AAGGCGACTCCAGTTAAGGATCGAGGCACAAGGGAAGTACCTGCAATCAATTCTAGAGAA 687
||||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 480 AAGGCGACTCCAGCTAAGGATCGAGGCACAAGGAAAGTACTTGCAATCAGTTCTAGAGAA 539
Query 688 AGCTTGCAAGGCTATAGAGGAGCAAGCTGTTGCATTTGCTGGGTTAGAGGCAGCTAGAGA 747
||||||||||||||||||||| ||||||||||| ||||||||| |||| || ||||||||
Sbjct 540 AGCTTGCAAGGCTATAGAGGAACAAGCTGTTGCGTTTGCTGGGCTAGAAGCGGCTAGAGA 599
Query 748 AGAGCTTTCAGAGCTAGCCATAAAGGCCTCCATCACCAATGGGTGCCAAGGAACAACAAG 807
||||||||||||||| |||||||| | ||||||||||||||| |||||||| ||||||||
Sbjct 600 AGAGCTTTCAGAGCTGGCCATAAAAGTCTCCATCACCAATGGATGCCAAGGCACAACAAG 659
Query 808 CACCTTCGACACAACCAAAATGATGA-TTCCATCCTTATCCGAGCTTGCAGTAGCAATAG 866
||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct 660 CACATTCGACACAACCAAAATGAC-ACTTCCATCCTTATCCGAGCTTGCAGTAGCGATAG 718
Query 867 AGCACAAGAACAACTGTTCAGCAGAGAGCTCTCTGACTTCCAGCACTGTAGGAAGTCCGG 926
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 719 AGCACAAGAACAACTGTTCAGCAGAGAGCTCTCTGACGTCCAGCACTGTGGGAAGTCCGG 778
Query 927 TATCAGCTGCGTTGATGAAGAAGAGACAACGAGGAGTGTTTGGAAATGGAGATAGTGTGG 986
| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 779 TTTCAGCTGCTTTGATGAAGAAGAGGCAACGAGGAGTGTTTGGAAACGGAGATAGTGTGG 838
Query 987 TTGTTGGTCATGATGCTGGATGGGTTATGCCTAGTAGTAGCATTGGATGA 1036
||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 839 TTGTTGGTCATGAAGTTGGATGGGTTATGCCTAGTAGCAGCATTGGATGA 888
> Ahg319110 jgi|Araly1|319110|fgenesh1_pm.C_scaffold_3002126
Length=897
Score = 654 bits (354), Expect = 0.0
Identities = 648/784 (83%), Gaps = 43/784 (5%)
Strand=Plus/Plus
Query 202 CTC-TGACGGAACCAATCTTCCCATCGACGCTTGTCTGGTCCTAACCACTGACCCCAAGC 260
||| ||||||||| ||||||||| |||||||||| |||| ||||||||||||| || |
Sbjct 65 CTCTTGACGGAACTAATCTTCCCGGCGACGCTTGTTTGGTTTTAACCACTGACCCTAAAC 124
Query 261 CTCGCCTTCGTTGGACCTCTGAGCTCCATGAAAGATTCGTTGACGCCGTCACTCAGCTCG 320
|||| || || ||||| ||||||||||||| |||||||||||||| || || |||||||
Sbjct 125 CTCGTCTCCGGTGGACAACTGAGCTCCATGAGAGATTCGTTGACGCTGTTACCCAGCTCG 184
Query 321 GCGGACCCGACAAAGCAACGCCTAAAACTATAATGAGAACAATGGGAGTGAAGGGTCTCA 380
| || || |||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 185 GTGGTCCTGACAAAGCGACGCCCAAAACTATCATGAGAACAATGGGAGTGAAGGGTCTCA 244
Query 381 CTCTTTACCATCTCAAATCTCATCTTCAGAAATTCCG-CTTGGGGAGGCAATCTTGTAAA 439
|||| ||||| |||||||| ||||||||||||||||| || ||| || ||| || | |||
Sbjct 245 CTCTCTACCACCTCAAATCACATCTTCAGAAATTCCGACTAGGG-AGACAAGCTGGCAAA 303
Query 440 GAATCAATTGACAACTCTAAGGATGTTTCTTGTGTTGCGGAGAGTCAGGACACTGGTTCA 499
||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 304 GAATCAACTGAGAACTCTAAGGATGCTTCTTGTGTTGGGGAGAGTCAGGACACAGGTTCA 363
Query 500 TCTTCAACATCATCCTTAAGATTGGCTGCT-CAAGAACAGAACGAGAGTTACCAGGTCAC 558
|||||||||||||| || ||| ||| ||| || || ||||||||| ||||||| |||||
Sbjct 364 TCTTCAACATCATCATTGAGAATGG-TGCAGCAGGAGCAGAACGAGGGTTACCAAGTCAC 422
Query 559 TGAAGCTTTGCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAGCAACTAGAGTATAC 618
||||||| | ||||| ||||||||||||||||||| |||||| |||||| | ||| ||
Sbjct 423 TGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAAACTACATGAGCAATTGGAGCATGG 482
Query 619 GCAGGTGCAAAGGCGACTCCAGTTAAGGATCGAGGCACAAGGGAAGTACCTGCAATCAAT 678
|||||||||| || |||||||| ||||||| ||||||||||| |||||||| ||||| ||
Sbjct 483 GCAGGTGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAGGAAAGTACCTTCAATCGAT 542
Query 679 TCTAGAGAAAGCTTGCAAGGC-TATAGAGGAGCAAGCTGTTGCATTTGCTGGG-TTAGAG 736
||| || |||||||||||||| | | || |||||||||| ||| ||||||||| || |||
Sbjct 543 TCTTGAAAAAGCTTGCAAGGCCTTT-GACGAGCAAGCTGCTGCTTTTGCTGGGCTT-GAG 600
Query 737 GCAGCTAGAGAAGAGCTTTCAGAGCTAGCCATAAAGGCCTCCATCACCAATGGGTGC-CA 795
|| |||||||||||||||||||| ||||| || |||| ||| | | | | | | | ||
Sbjct 601 GCTGCTAGAGAAGAGCTTTCAGATCTAGCTATCAAGGTCTC--T-A--A-TAGCT-CTCA 653
Query 796 AGGAACAACAAG-CAC---CTTCGACACAACCAAA-ATGATGAT--T-CCATCCTTATCC 847
|||||||||| | | | |||||| |||| ||| |||||||| | ||||| || |||
Sbjct 654 AGGAACAACA-GTCCCGTACTTCGATGCAAC-AAAGATGATGATGATGCCATCTTTGTCC 711
Query 848 GAGCTTGCAGTAGCAATAGAG--CA----CAAGA--ACAAC----TGTTCAGCAGAGAGC 895
|||||||||||||||||||| || ||| | ||||| ||||||| ||| |||
Sbjct 712 GAGCTTGCAGTAGCAATAGACAACAAAAACAACATCACAACCAACTGTTCAGTAGAAAGC 771
Query 896 TCTCTGACTTCCAGCACTG-TAGGAAG-TCCGGTATCAGCTGCGTTGATGAAGAAGAGAC 953
||||| ||||||| |||| | ||| | || | |||| ||||| | |||||||||| | |
Sbjct 772 TCTCTAACTTCCATCACTAATGGGA-GCTC-GATATCTGCTGCATCGATGAAGAAGCGGC 829
Query 954 AACG 957
||||
Sbjct 830 AACG 833
> Ahg930513 jgi|Araly1|930513|scaffold_302970.1
Length=392
Score = 147 bits (79), Expect = 3e-34
Identities = 130/153 (85%), Gaps = 10/153 (7%)
Strand=Plus/Plus
Query 546 GTTACCAGGTCACT-GAAGCTTTGCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAG 604
||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 58 GTTACCAAGTCACTGGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACGAG 117
Query 605 CAACTAGAGTATACGCAGGTGCAAAGGCGACTCCAGTTAAGGATCGAGGCACAAGGGAAG 664
||| | | | | | | ||||| || |||||||| ||||||| |||||||||| |||
Sbjct 118 CAATT-G-G-A---G--G-TGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAGAAAAG 168
Query 665 TACCTGCAATCAATTCTAGAGAAAGCTTGCAAG 697
||||||||||||||||| || ||||||||||||
Sbjct 169 TACCTGCAATCAATTCTTGAAAAAGCTTGCAAG 201
> Ahg888000 jgi|Araly1|888000|Al_scaffold_0133_2
Length=303
Score = 99.0 bits (53), Expect = 8e-20
Identities = 96/115 (83%), Gaps = 10/115 (9%)
Strand=Plus/Plus
Query 546 GTTACCAGGTCACT-GAAGCTTTGCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAG 604
||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 53 GTTACCAAGTCACTGGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACGAG 112
Query 605 CAACTAGAGTATACGCAGGTGCAAAGGCGACTCCAGTTAAGGATCGAGGCACAAG 659
||| | | | | | | ||||| || |||||||| ||||||| ||||||||||
Sbjct 113 CAATT-G-G-A---G-A--TGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAG 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5