BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13660.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891002 jgi|Araly1|891002|Al_scaffold_0007_2988 1413 0.0
> Ahg891002 jgi|Araly1|891002|Al_scaffold_0007_2988
Length=954
Score = 1413 bits (765), Expect = 0.0
Identities = 892/955 (93%), Gaps = 2/955 (0%)
Strand=Plus/Plus
Query 129 ATGAAAGAGACTAATTTTGGCGAGAAAACGCGCGTTCTGGTAGTTGGTGGGACGGGATCA 188
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1 ATGAAAGAGACTAATTTTGGCGAGAAAACGCGGGTTCTGGTGGTTGGTGGGACTGGATCG 60
Query 189 TTGGGGAGGAGGATTGTAAGTGCGTGTTTGGCTGAGGGACACGAGACTTATGTTCTCCAG 248
|||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTGGGGAGGAGGATCGTAACTGCGTGTTTGGCTGAGGGACACGAGACTTACGTTCTCCAG 120
Query 249 CGGCCGGAGATTGGAGTGGACATCGAGAAGGTGCAGCTACTTCT-TTCTTTCAAAAGACT 307
||||||||| ||||||||| |||||||||||||||| | ||| |||||||||||||||
Sbjct 121 AGGCCGGAGAGCGGAGTGGACCTCGAGAAGGTGCAGCTTC-TCTATTCTTTCAAAAGACT 179
Query 308 CGGCGCACATCTTGTGGAAGGCTCATTCTCCGATCACCAAAGCCTTGTCTCTGCCGTAAA 367
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 180 CGGCGCACATCTTGTCGAAGGCTCATTCTCCGATCACCAGAGCCTTGTCTCTGCCGTGAA 239
Query 368 GCAAGTCGACGTGGTTGTCTCCGCCATGTCCGGTGTCCACTTCCGCACCCACAACATCCC 427
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GCAAGTCGATGTGGTTGTCTCCGCCATGTCCGGTGTCCATTTCCGCACCCACAACATCCC 299
Query 428 CGTTCAGCTCAAGCTCGTCGCAGCCATCAAAGAGGCCGGTAACGTCAAGCGTTTCTTACC 487
||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 CGTTCAGCTCAAGCTCGTCAAAGCCATCAAAGAGGCTGGTAACGTCAAGCGGTTCTTACC 359
Query 488 ATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCCATGCCACCAGGAAGTGAAAC 547
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATCAGAATTTGGAATGGATCCATCACGTATGGGACATGCCATGCCACCAGGAAGTGAAAC 419
Query 548 ATTTGATCAAAAAATGGAAATACGAAATGCAATTAAGGCCGCCGGGATCTCCCACACATA 607
||| ||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||
Sbjct 420 ATTCGATCAAAAAATGGAAGTACGAAATGCAATCGAGGCCGCGGGGATCCCCCACACATA 479
Query 608 CCTCGTCGGTGCTTGTTTTGCCGCATACTTCGGCGGAAATTTATCTCAAATGGGAACTTT 667
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 480 TATCGTCGGTGCTTGTTTTGCCGCATACTTTGGCGGAAATTTATCTCAATTGGGAACTTT 539
Query 668 GTTCCCTCCGAAAAACAAAGTTGATATTTATGGGGACGGAAATGTTAAAGTGGTGTTCGT 727
| ||||||| ||||| | |||||||||||||||||||||||||||||||||||| | |||
Sbjct 540 GCTCCCTCCAAAAAAGACAGTTGATATTTATGGGGACGGAAATGTTAAAGTGGTATACGT 599
Query 728 AGATGAAGATGACATGGCAAAATATACAGCGAAGACGCTTAATGATCCCCGAACGTTGAA 787
|||||||||||||||||||||||| | || ||||||||||| |||||||||||| ||||
Sbjct 600 AGATGAAGATGACATGGCAAAATACGCCGCAAAGACGCTTAACGATCCCCGAACGATGAA 659
Query 788 TAAAACTGTGTATGTTAGACCTACCGACAACATTCTCACACAAATGGAACTAGTTCAGAT 847
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TAAAACAGTGTATGTTAGGCCTACCGACAACATTCTCACACATATGGAACTAGTTCAGAT 719
Query 848 ATGGGAGAAACTAACCGAAAAAGAGTTGGAGAAGACCTATGTTTCAGGAAACGACTTTCT 907
|||||||||||||| | |||||||||||||||| |||||| |||| ||| ||||||||
Sbjct 720 ATGGGAGAAACTAAGTGGGAAAGAGTTGGAGAAGAACTATGTCTCAGCAAAAGACTTTCT 779
Query 908 TGCTGACATTGAAGATAAGGAGATATCACACCAAGCGGGACTAGGACACTTTTATCACAT 967
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 780 TGCTGACATTGAAGATAAGGAGATACCACACCAAGCGGGAGTAGGACACTTTTATCACAT 839
Query 968 ATACTACGAAGGTTGTCTCACAGATCATGAAGTTGGAGACGACGAAGAAGCTACTAAACT 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 840 ATACTACGAAGGTTGTCTCACAGATCATGAAGTTGGAGACGACGAAGAAGCTTCTAAACT 899
Query 1028 CTATCCGGATGTGAAGTACAAACGCATGGATGAATATTTGAAAATTTTCGTATAA 1082
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 900 CTATCCGGAGGTGAAGTATACACGCATGGATGAATATTTGAAAATTTTCGTATAA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5