BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13670.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891001 jgi|Araly1|891001|Al_scaffold_0007_2987 1808 0.0
Ahg947053 jgi|Araly1|947053|scaffold_703282.1 316 2e-85
> Ahg891001 jgi|Araly1|891001|Al_scaffold_0007_2987
Length=1185
Score = 1808 bits (979), Expect = 0.0
Identities = 1120/1185 (95%), Gaps = 21/1185 (2%)
Strand=Plus/Plus
Query 66 atggcttcttcttctctacctctttctcttccgtttccactccgatctcttACTAGTACC 125
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||
Sbjct 1 ATGGCTTCTTCTTCTCTACCTCTGTCTCTTCCGTTTCCACTCCGATCTCGTAGTAGTCCC 60
Query 126 ACTCGATCTCTACCATTTCAATGTTCTCCTCTCTTTTTCTCTATTCCTTCTTCAATCGTT 185
|||||||||||||| |||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 61 ACTCGATCTCTACCTTTTCGATGCTCTCCTCTCTTTTTCTCTCTTCCTTCTTCAATCGTT 120
Query 186 TGCTTCTCCACTCAAAA----TCC-----CGACCGCGAAGAGGTCCGGTGGCTCCGGGAA 236
||||||||||||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 121 TGCTTCTCCACTCAAAACCCCTCCGGTTACGACCGCGAAGAAGTCCGGTGGCTCCGGGAA 180
Query 237 GAGCAGAGATGGATTCGCGAGGAGCAACGATGGATTCGTGAAGAACAGAGATGGATACGC 296
||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GAGCAAAGATGGATCCGCGAGGAGCAACGATGGCTTCGTGAAGAACAGAGATGGATACGT 240
Query 297 GAACGTGAATCGCTTCTACAAGAGATTTCGGATCTACAGCTCAGAATTCAATCCCTAGAG 356
|| |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 241 GAGCGTGAATCACTTCTACAAGAGATTTCGGATCTCCAGCTCAAAATTCAATCCCTAGAG 300
Query 357 TCACGAAATTCGCAATTGGGGAATTCTATTCCCGATACGATTTCGAATATCGCTGCTTTG 416
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||
Sbjct 301 TCACGAAATTCGCAATTGGGGACTTCTGTTCCCGATACGATTTCGAATATCGCTGCGTTG 360
Query 417 CTTCAGGTTTTGAAGGAGAAGAATCGGATTTCTGAGAGTGGATTGAGCGCAACGCCGATG 476
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CTTCAGGTTTTGAAGGAGAAGAATCGGATTTCGGAGAGTGGATTGAGCGCAACGCCGATG 420
Query 477 GTATTGGAGAGTACGAGAGAACAAATTGTTGAGGAGGT---GGAA---GAAGAAG-A--G 527
|||||||||||||||||||||||||||||||||||||| |||| ||||||| | |
Sbjct 421 GTATTGGAGAGTACGAGAGAACAAATTGTTGAGGAGGTAGAGGAAGTGGAAGAAGAAGTG 480
Query 528 AAGCGAGTGATTATTGCTGAAGAGAAAGTTAGGGTTTCGGAGCCGGTGAAGAAGATCAAG 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 AAGCGAGTGATTATTGCTGAAGAGAAAGTTAGGGTTTCGGAGCCGGTGAAGAAGAAGAAG 540
Query 588 A-G-GA-GGATATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAGGAAGCT 644
| | || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACGAGACGGACATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAGGAAGCT 600
Query 645 CTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGT 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGT 660
Query 705 GGGACTGCAAGTGCTGTTAAGACTTGGCAAGCATCGCTTGGGGTCCGTGAGGATGGGGTA 764
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 661 GGGACTGCAAGTGCTGTTAAGACTTGGCAAGCATCGCTTGGCGTCCGTGAGGATGGGATA 720
Query 765 ATGACAGCAGAGCTTCTTCAGAGGTTGTTCATGGATGAAGACGTAGAGACAGATAAGGAT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGACAGCAGAGCTTCTTCAGAGGTTGTTCATGGATGAAGACGTAGAGACAGATAAGGAT 780
Query 825 GAAGCAAGTACAATGAAGAAAGAGGAAGCTGGTAATGGGGCGGTATTTACTTCAGTGACA 884
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 781 GAAGCAAGTACAATGAAGAAAGAGGAAGCTGGTAATGGATCGGTATTTAGTTCAGTGACA 840
Query 885 CAAGTCCCTGAGAAGAAGCAATCAATCGTGAAAGATCAAAGTGACAGAGAAGTTGACGTT 944
||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||
Sbjct 841 CAAGTCCCTGAGAAGAAGCAATCAATCATAAAAGATCAAAGTAACAGAGAAGATGACGTT 900
Query 945 ACTCAAAATCGGGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATT 1004
||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 ACTCAAAATCGCGTTTATCTTCTTGGAGAAAACAGATGGGAAGATCCTTCCAGGCTCATT 960
Query 1005 GGCAGGAACAAACCGGTAGACAGAAGTGAATCAACAAACACCAAAACGAGGTGCATCACT 1064
||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||
Sbjct 961 GGCAGGAACAAACCGGTAGACAGTAGTAAATCCACAATCACCAAAACGAGGTGCATCACT 1020
Query 1065 TGTCGAGGGGAGGGTCGATTGATGTGCCTAGAGTGCGATGGAACCGGTGAGCCAAACATT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGTCGAGGGGAGGGTCGATTGATGTGCCTAGAGTGCGATGGAACCGGTGAGCCAAACATT 1080
Query 1125 GAGCCGCAGTTCATGGAGTGGGTTGGTGAAGATACGAAGTGTCCGTACTGTGAAGGTCTT 1184
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 GAGCCGCAGTTTATGGAATGGGTTGGTGAAGATACAAAGTGTCCGTACTGTGAAGGTCTT 1140
Query 1185 GGCTATACAGTTTGCGATGTCTGCGACGGCaaaaaaaaCTTATAA 1229
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGCTATACAGTTTGCGATGTCTGCGACGGCAAAAAAAACTTATAA 1185
> Ahg947053 jgi|Araly1|947053|scaffold_703282.1
Length=397
Score = 316 bits (171), Expect = 2e-85
Identities = 278/325 (86%), Gaps = 26/325 (8%)
Strand=Plus/Plus
Query 732 CAA-GCATCGCTTGGGGTCCGTGAGGATGGGGTAATGACAGCAGAGCTTCTTCAGAGGTT 790
||| ||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 74 CAATGCATCGCTTGGCGTCCGTGAGGATGGGATAATGACAGCAGAGCTTCTCCGGAGGTT 133
Query 791 GTTCATGGATGAAGACGT--AG--A--GA----CAGA---------TAAGGATG---AAG 828
|||||||||||||||||| || | || |||| | ||| || | |
Sbjct 134 GTTCATGGATGAAGACGTAGAGACATGGAGGGGCAGAGCGGTTCTGTTAGGTTGTTTACG 193
Query 829 CAAGTA-C-AATGAAGAAAGAGGAAGCTGGTAATGGGGCGGTATTTACTTCAGTGACACA 886
| | | | ||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 194 GATGAAGCGAATAAAGAAAGAGGAAGCTGGTAATGGATCGGTATTTAGTTCAGTGACACC 253
Query 887 AGTCCCTGAGAAGAAGCAATCAATCGTGAAAGATCAAAGTGACAGAGAAGTTGACGTTAC 946
||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 254 AGTCCCTGAGAAGAAGCAATCAATCATAAAAGATCAAAGTGACAGAGAAGTCGACGTTAC 313
Query 947 TCAAAATCGGGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATTGG 1006
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TCAAAATAGTGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATTGG 373
Query 1007 CAGGAACAAACCGGTAGACAGAAGT 1031
| ||||||||||||||||||||||
Sbjct 374 -ATGAACAAACCGGTAGACAGAAGT 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5