BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13680.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493544 jgi|Araly1|493544|fgenesh2_kg.7__2977__AT4G13680.1 1744 0.0
Ahg495357 jgi|Araly1|495357|fgenesh2_kg.8__1173__AT5G52930.1 449 2e-125
Ahg495525 jgi|Araly1|495525|fgenesh2_kg.8__1341__AT5G54450.1 126 4e-28
> Ahg493544 jgi|Araly1|493544|fgenesh2_kg.7__2977__AT4G13680.1
Length=1242
Score = 1744 bits (944), Expect = 0.0
Identities = 1152/1250 (92%), Gaps = 23/1250 (2%)
Strand=Plus/Plus
Query 1 CATGTCTTTGCTTCTCAATCAG-CACTCGAAGCTCTGCTTTCGGAAA-CCTGTGCTGGTG 58
|||||||||||||||| ||||| || ||||||||||||||||||||| ||| || ||||
Sbjct 1 CATGTCTTTGCTTCTCCATCAGCCA-TCGAAGCTCTGCTTTCGGAAACCCT-TGTTGGTA 58
Query 59 AGATCCTCTCCTCATCTTTCTAATGGCCTCTCATCTTTGTCGTTGCAAACTGATTCTCAG 118
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 59 AGATCATCTCCTCATCTTTCTAATGGCCTCTCATCTTTGTCGTTGCAAACTCATTATCA- 117
Query 119 A-CTCGTGTCTTGCTCTGCGCTGATCCATGTGGAGGTAATCGGGGAATAGCCAT-GACTA 176
| | ||||||| ||||||||||||||||||||||||||| |||| |||| | || ||
Sbjct 118 ATGTTATGTCTTGATCTGCGCTGATCCATGTGGAGGTAATCCCGGAAAAGCC-TCGATTA 176
Query 177 TGAGGTCTA-GTCGTTTTCTTCGAACCCTTTCTTTCGAAGGGTGGGAAGAGAT-GAGTGA 234
|||||| | || |||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 177 GGAGGTC-AGGTGGTTTTCTTCGAACCCTTTCTTTCGAACAGTGGGAAGAGATGGA-TGA 234
Query 235 GAACGA-AGATAAGATTTG--TGCAGAGCTGCT-CAAGGAAATGGGAGCGATAGGATCAT 290
|||||| || ||| ||| | ||| || | |||||||||||| ||||||||||||
Sbjct 235 GAACGATGGA-AAG--TTGCTTAAAGATTTG-TGTAAGGAAATGGGAACGATAGGATCAT 290
Query 291 GCGGTGGATGGCTACCTACTTTGAAGGACGGCGTGTTGCGTCTCCGAGAAGTGAATCTAA 350
| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 291 CCAATGGATGGCTAGCTACTTTGAAGGACGGCGTGTTGCGTCTCCGAGAAATGAATCTAA 350
Query 351 ACCATGAAACGGATCGGAAACGCATTTCGCTGCCTCCTCTTGTGACTCTGCCTCATTGCC 410
|| |||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 351 ACTATGAAACGGATCCGAAACGCATTTTGCTGCCTCCTCTTGTAACTCTGCCTCATTGCC 410
Query 411 AAACACAATATGTCACCAACGTGGCCATGTCTACGTCTTCCCCTGAAGAAGAGGACTGTG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AAACACAATATGTCACCAACGTGGCCATGTCTACGTCTTCCCCTGAAGAAGAGGACTGTG 470
Query 471 TTGTGGCTGTCAAGTTCCTGGGACCTCAACTCAGCTTTTGCAGACCCGCTCAAAGCAATT 530
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 471 TTGTGGCTGTCAAGTTCTTGGGACCTCAACTCAGCTTTTGCAGACCCGCTCAAAGCAACT 530
Query 531 CCGAGTGGATCAACATCAGAATGACAGACCCCTGCTTCTTCTCCTCCCCTGTCATGTTGT 590
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 531 CCGAGTGGATCAACTTCAGAATGACAGACCCCTGCTTCTTCTCCTCCCCTGTCATGTTTT 590
Query 591 CCAAGAAAAATGAGATGTTGCGCATAGCTGGCTCTGGAGGCCAACTCATCGGATCATGGG 650
|||||||| |||| ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 591 CCAAGAAAGATGACATGTTTCGCATAGCCGGCTCTGGAGGCCACCTCATCGGATCATGGG 650
Query 651 ATCTCCAAAACCATAGCAACAACCCCAAGTTGCAGATCTTGCGGTTTCAAAACCTTCCCA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ATCTCCAAAACCATAGCAACAACCCCAAGTTGCAGATCTTGCGGTTTCAAAACCTTCCCA 710
Query 711 AGCTGTCCGAGACAAAACGAGAACTTCTGGAGTCGTGCTACACAAGTGAACACTTGGTGG 770
||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 711 AGCTGTCTGAGACAAAACGAGACCTTCTGGATTCGTGCTACACAAGCGAACACTTGGTGG 770
Query 771 AGTCAATAACCACCAGTGAAACTTTCATTGTTAAGTTGTACATGAAGACGGCAGAGATCG 830
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 771 AGTCAATAACCACCAGTGAAACTTTCATTGTTAAGTTGTACAGGAAGACAGCAGAGATCG 830
Query 831 ACAAAGGTATTCCGAGAAAGAAAACAGAAGCAATAATGGTGTTCAGGCTAGACGAAGAAG 890
|||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 831 TCAAAGGTATTCCTAGAATGAAAACAGAAGCAATAATGGTGTTCAGGCTAGATGAAGAAG 890
Query 891 GAAACGCTGTTTACACTCAAGACATCGGAGATCAAAGCATTTTTCTCACAAATTCTGAAG 950
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 891 GAAACGCTGTTTACACTCAAGACATCGGAGATCAAAGCATTCACCTCACAAATTCTGAAG 950
Query 951 CTTTCTGTTTCCCTTCGAGCTCCTCTCTCAGCCTGGGTCGACCTAACTTCGTCAAAATCG 1010
|||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 951 CTTTCTGTGTCCCTTCGAGCTCCTCTCTCTGCCTGCGTCGACCTAACTTCGTCAAAATCC 1010
Query 1011 TTGATGTCAACGAAGACAGATATTTCAAGCTGGCTAAACAAAAGTGGGATTGTTAGAGTC 1070
|||||||| |||||||||||||| |||||||| |||| ||||||||||||||||| ||||
Sbjct 1011 TTGATGTCGACGAAGACAGATATATCAAGCTGCCTAAGCAAAAGTGGGATTGTTAAAGTC 1070
Query 1071 AATCACTATTCCATCTCAAATGGGAATTGAGTTAAGAGTCTTAGAGTCTTGTCTTTTCTT 1130
| ||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||
Sbjct 1071 ACTCACTATTCCATCTCAAATTGGAATTGAGTTA-GAGTCT-AGAGTCTTGTCTTCTCTT 1128
Query 1131 TTAAACCTTTTAAACATCGATTATGTTGGGACGATGAACATGTTGGATTAAAAGAT-CCA 1189
|||||||||| |||||||||||||||| ||||| |||||| || ||||||||||| |||
Sbjct 1129 TTAAACCTTTCAAACATCGATTATGTTAGGACGCTGAACACATTCGATTAAAAGATTCCA 1188
Query 1190 ACCTTTTGCTATAAGGTTGGTTTCTATTAGCAGTCTCAGTTTGCTAAGAA 1239
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ACCTTTTACTATAAGGTTGGTTTCTATTAGCAGTCTCAGTTTGCTAAGAA 1238
> Ahg495357 jgi|Araly1|495357|fgenesh2_kg.8__1173__AT5G52930.1
Length=1340
Score = 449 bits (243), Expect = 2e-125
Identities = 531/664 (80%), Gaps = 43/664 (6%)
Strand=Plus/Plus
Query 362 GATCGGAAACGCATTTCGCTGCCTCCTCTTGTGACTCTGCCTCATTGCCAAACACAA-TA 420
|||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 259 GATCCGAAACGCATTCCCCTGCCTCCTCTTGTGACTCTGCCTCATTGCCAAACCCAAGT- 317
Query 421 TGTCACCAACGTGGCCATGTC-TACGTCTTCCCCTGAAGA-AGAGGACTGTGTTGTGGCT 478
||||||||||||||||||||| | | ||||| ||||| || | || | ||||||||||||
Sbjct 318 TGTCACCAACGTGGCCATGTCCT-CATCTTCTCCTGAGGATAAAGAA-TGTGTTGTGGCT 375
Query 479 GTCAAGTTCCTGGGACCTCA-ACTCAGCTTTTGCAGACCCGCTCAAAGCAATTCCGAGTG 537
||||||||| | |||||||| | ||||||| || ||||| |||||||| || ||| ||||
Sbjct 376 GTCAAGTTCTTAGGACCTCAGA-TCAGCTTATGTAGACCAGCTCAAAGAAACTCCCAGTG 434
Query 538 GATCAACATCAGAAT-GACAGACCCCTGCTTCTTCTCCTCCCCTGTCATGTTGTCCAAGA 596
||||||||||||||| || | |||| || ||| |||||||||||| ||||| |||||||
Sbjct 435 GATCAACATCAGAATCGAAA-ACCCATGTTTCCACTCCTCCCCTGTTATGTTTTCCAAGA 493
Query 597 AAAATGAG-ATGTTGCGCATAGCTGGCTCTGGAGGCCAACTCATCGGATCATGGGATCTC 655
|| ||| | ||||| | ||| | || |||||||| || ||||| |||||||||||||||
Sbjct 494 AAGATG-GCATGTTTCACATTCCCGGATCTGGAGGTCACCTCATTGGATCATGGGATCTC 552
Query 656 CA-AAAC-CATAGCAACAACCCCAAG-TTGCAGAT-CTTGCGGTTTCAA-AACCTTCCCA 710
|| |||| || |||| ||| ||||| || |||| || ||| || ||| |||||||||
Sbjct 553 CACAAACACA-AGCA-CAATCCCAATATT-CAGAGGCT-GCGATT-CAAGAACCTTCCCG 607
Query 711 AGCTGTCCGAGAC-AAAACGAGAACTTCTGGAGTCGTGCTACACAAGTGAACACTTGGTG 769
|||| || |||| |||| | || ||| || | ||||| | |||||| |||||||||||
Sbjct 608 AGCTCACCAAGACCAAAAGG-GAGCTTTTGCATTCGTGTTGCACAAGCCAACACTTGGTG 666
Query 770 GAGTCAATAACCACC-AGTGAAACTTTCATTGTTAAGTTGT-ACATGAAGACGGCAGAGA 827
||||||| ||| || | ||| |||||| |||| |||| || ||| |||| | || |
Sbjct 667 GAGTCAAGAACTACGGA-TGAGACTTTCTTTGTCAAGT-GTTACAGGAAGGC--CACA-- 720
Query 828 TCGACAAAGGTATTCCGAGAAA-GAAAACAGAAGCAATAATGGTGTTCAGGCTAGACGAA 886
|| || || | || ||| ||||||| |||| ||||||| |||| ||||||||||
Sbjct 721 TC--CAGTGGCGTGGTGA-AAATGAAAACAAAAGCTGTAATGGTCTTCAAGCTAGACGAA 777
Query 887 GAAGGAAACGCTGTTTACACTCAAGACATCGGAGATCAAAGCATTTTTCTCACAAATTCT 946
||||||||||||||||||||||||||||||||| ||| ||||||| ||| |||| |||
Sbjct 778 GAAGGAAACGCTGTTTACACTCAAGACATCGGACATCTCTGCATTTTCCTCTCAAAGTCT 837
Query 947 GAAGC-TTTCTGTTTCCCTTCGAGCTCC-TCTCTCAGCCTGGGTCGACCTAACTTCGTCA 1004
||| | ||| ||| ||||| | | |||| | ||| || || | | |||||| |||||
Sbjct 838 GAACCGTTT-TGTGTCCCTGCTAACTCCATTTCTG-GCATGTG-C--CCTAACATCGTCG 892
Query 1005 AAAT 1008
||||
Sbjct 893 AAAT 896
> Ahg495525 jgi|Araly1|495525|fgenesh2_kg.8__1341__AT5G54450.1
Length=1071
Score = 126 bits (68), Expect = 4e-28
Identities = 273/368 (74%), Gaps = 30/368 (8%)
Strand=Plus/Plus
Query 673 CCCCAAGTTGCAGATCTTGCGGTTTC-AAAACCTTCCCAAGCTGTCCGAGACAAAACGAG 731
||| || ||||||| ||||| || | |||| || |||||| | ||| |||| ||||| |
Sbjct 625 CCCGAA-TTGCAGAGATTGCGATTCCGAAAA-CTCCCCAAGTTTTCCAAGACCAAACGGG 682
Query 732 AACTTCTGGAGTCGTGCTACA-CAAGTGAACACTTGGTGGAGTCAATAACCA-CCAGTGA 789
| ||| |||| || |||| || | | |||||||| |||||||| ||| | ||||
Sbjct 683 AGCTTTTGGATTCCTGCTGCATC-ACCGAACACTTAGTGGAGTC----CCCAGCTGGTGA 737
Query 790 AACTTTCATT-GTTAAGTTGTACATGAAGACGGCA-GAG-A-TC--GAC-A--AA-GGTA 839
||| ||| || ||||||| ||||| ||| || ||| | | | ||| | || ||||
Sbjct 738 AACCTTC-TTGGTTAAGTGGTACAGGAAAACTGCACCCGCACCCAAGACTATCAATGGTA 796
Query 840 TTCCGAGAAA-GAAAACAGAAGCAATAATGGTGTTCAGGCTAGACGAAGAAGGAAACGCT 898
| || ||| | ||||| || | | |||||||||| || || ||| |||||||||||
Sbjct 797 TGGTGA-AAATGCAAACAAAAACTGTGATGGTGTTCAAACTTGATGAAAAAGGAAACGCT 855
Query 899 GTTTACACTCAAGACATCGGAGATCAA-AGCATTTTTCTCACAAATTCTGAAGCTTTCTG 957
||||||||||||||||| || |||| | |||||| ||| |||| |||||| |||||||
Sbjct 856 GTTTACACTCAAGACATTGGGGATCTCTA-CATTTTCCTCTCAAAGTCTGAACCTTTCTG 914
Query 958 TTTCCCTTCGAGCTCCTCTCTCAGCCTGGGTCGACCTAACTTCGTCAAAATCGTTG-ATG 1016
| ||||| | ||||||| || | || || || | |||| |||| | ||| ||| |||
Sbjct 915 TGTCCCTGCTAGCTCCTTTCCCGGCATG--TCCTC-TAACCGCGTCGAGATC-TTGGATG 970
Query 1017 TCAACGAA 1024
||||||||
Sbjct 971 TCAACGAA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5