BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13690.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355445 jgi|Araly1|355445|fgenesh1_pg.C_scaffold_7002618 977 0.0
> Ahg355445 jgi|Araly1|355445|fgenesh1_pg.C_scaffold_7002618
Length=765
Score = 977 bits (529), Expect = 0.0
Identities = 699/775 (90%), Gaps = 35/775 (5%)
Strand=Plus/Plus
Query 273 ATGAAGAAACCAATTCCTAAAATTAGGGTTTTTGGTCAGCGATCGATTGCTTCTTCCTTC 332
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAAGAAGCCAATTCCTAAAATTAGGGTTTTTGGTCAGCGATCAATTGCTTCTTCCTTC 60
Query 333 CTGAATCTCAGCTCGATTCCTGTCGATAATACTTCGGAAAATCCGCCGGAGAAAGTGGAG 392
||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 61 TTGAATCTGAGCTCGATTCCTGTCGATGGCCCTCCGGAAAATCCGTCGGAGAAAGTGGAG 120
Query 393 AATCGCAGCAAGCTGAACAAATCAGTGCTGTTTAAG-CC-A-AACAACTTTGAGGAGCGG 449
||| | ||||| |||||||||||||| ||||||||| || | |||||| ||||||| ||
Sbjct 121 AATTGTAGCAAACTGAACAAATCAGTTCTGTTTAAGCCCAACAACAACACTGAGGAGAGG 180
Query 450 CTAAGACCATTTACTTCTTTGGTTAGCTCTAAAGAT-CGACTCATATCTCTCA------T 502
||||||||||| |||||||||||||||||||||||| |||||| |||||||| |
Sbjct 181 CTAAGACCATTCACTTCTTTGGTTAGCTCTAAAGATGTGACTCAAATCTCTCATGGGTTT 240
Query 503 ---A--GAGAGAAAAGCGAGGGAAGAAAAGAAAAACGGAGATGGTGGTCTAGAAAAGATG 557
| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 241 GGGATGGAGAGAAAAGCGAGGGAAGAAAGGAAAAACGGAGATGGTGGTCTTGAAAAGATG 300
Query 558 ATGCTTCAGCAGTTCAAGCCAAGAGAGATTCAGATTAGTGAAGAAGTGAGTAGAGATGTA 617
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 301 ATGCTTCAGCAGTTCAAGCCAAGAGAGACTCAGGTAAGTGAAGAAGTGAGTAGAGATGTA 360
Query 618 ACAGGTGATGTGAATCTTGAGCCCG-TGGATCAAACAGCT-GCTGAAGAAACGGATCACA 675
|| ||||| |||| ||||||| || |||||||||| | | |||||||||||||| ||
Sbjct 361 ACTGGTGAGGTGAGTCTTGAG-TCGTTGGATCAAACCG-TAGCTGAAGAAACGGA--GCA 416
Query 676 TGGCTCCGTACTCCACAGAAATCAATGAAGATATCATTGTGAGGGACGATAAAACATCAA 735
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ----TCCGTACTCCACTGAAATCAATGAAGATATCATTGTGAGGGACGATAAAACATCAA 472
Query 736 AGAAAAGAAAAGATCCTTTTGAAGGTATGGAGAGCAT-GAGTAGAACGGGAAAGTCC-GT 793
||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 473 AGAAAAGAAAAGATCCTTTTGAAGGTATGGAGAGCATCG-GTAGAACGGGAAAG-CCTGT 530
Query 794 TATGGTCTTTGGAGACAATTCAAAGGTATCAAAGCCAATGCAAAGGGAAAGAGAAAGA-- 851
||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 531 TATAGTCTTTGGAGACAACTCAAAGGTATCAAAGTCAATGCAAAGGGAAAGAGAAAGAGG 590
Query 852 A-GA--A-GCAACAACAATAGTAAGAAGCAGAGACCCATATACAACCATTATGCAAATGG 907
| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 591 AAGAGGAAGCAACAACATTAGTAAGAAGCAGAGACCCACATACAACCATTATGCAAATGG 650
Query 908 TTCAGGATGGTGGGACTGTGATATGGAAGGTGTTGACTCGGAAGAAGTGGGACATAGAGA 967
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 651 TTCAGGATGGTGGGACTGTGATATGGAAGGTGTTGATTCAGAAGAAGTGGGACATAGTGA 710
Query 968 AGTGTGGGAAGGAGTTGGCTCGACAACATTCGGAGATATAGTTGATTGGCACTAA 1022
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 711 AGTGTGGGAAGGAGTTGGCTCAACAACATTCGGAGATATAGTTGATTGGCACTAA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5