BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13700.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493543 jgi|Araly1|493543|fgenesh2_kg.7__2976__AT4G13700.1 2004 0.0
Ahg936040 jgi|Araly1|936040|scaffold_500231.1 870 0.0
> Ahg493543 jgi|Araly1|493543|fgenesh2_kg.7__2976__AT4G13700.1
Length=1482
Score = 2004 bits (1085), Expect = 0.0
Identities = 1246/1325 (94%), Gaps = 6/1325 (0%)
Strand=Plus/Plus
Query 1 ATGACTTTACTAATAATGATTACCCTAACCTCAATATCATTGTTACTTGCCGCCGCCGAA 60
||| ||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||
Sbjct 1 ATGCCTTTACTAATAATCATTACCCTAACCTCAATGTCGTTGTTACTTGCCGCCGGCGAA 60
Query 61 ACAATCCCGACAACTTTAGACGGCCCGTTCAAGCCATTAACCCGCCGGTTCGAGCCGTCT 120
|||||||| |||||||||||||| |||||||||||| | ||||||||||| || ||||||
Sbjct 61 ACAATCCCAACAACTTTAGACGGTCCGTTCAAGCCACTGACCCGCCGGTTTGACCCGTCT 120
Query 121 CTACGACGAGGCAGTGACGACTTACCTATGGATCATCCAAGGCTGAGAAAGAGAAACGTT 180
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 121 CTACGTCGAGGCAGTGACGACTTACCTATGGATCATCCAAGGCTGAGGAAGAGAAACATC 180
Query 181 AGCTCCGATTTTCCAGAACAGATTGCTTTAGCTCTCTCTACACCAACCTCCATGTGGGTT 240
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AGCTCTGATTTCCCAGAACAGATTGCTTTAGCTCTCTCTACTCCAACCTCCATGTGGGTT 240
Query 241 TCTTGGGTCACTGGTGATGCTATAGTTGGCAAAGATGTGAAACCGCTTGATCCTAGTTCT 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCTTGGGTCACTGGTGATGCTATAGTTGGAAAAGATGTGAAACCGCTTGATCCTAGTTCG 300
Query 301 ATTGCTAGTGAGGTTTGGTATGGGAAGGAGAAAGGAAACTATATGCTAAAGAAGAAAGGA 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 ATTGCTAGTGAGGTTTGGTATGGGAAGGAGAAAGGAAACTATTTGCTAAAGAAGAAAGGA 360
Query 361 AACGCAACAGTTTACAGTCAGTTATATCCCTCTGATGGTCTTCTCAATTACACATCAGGC 420
|| ||||||||||| ||||| || ||||||| ||||||||| ||||||||||||||||||
Sbjct 361 AATGCAACAGTTTATAGTCAATTGTATCCCTTTGATGGTCTCCTCAATTACACATCAGGC 420
Query 421 ATCATACATCATGTCCTCATTGACGGTCTGGAACCAGAAACTAGGTATTATTATAGGTGT 480
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 421 ATCATACACCATGTCCTCATTGACGGTCTGGAACCAGAAACTAAGTATTATTATAGATGC 480
Query 481 GGTGATAGCTCTGTTCCTGCAATGAGTGAGGAGATTTCTTTTGAGACTTTGCCATTGCCA 540
|| |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 481 GGCGATAGCTCTGTTTCTGCAATGAGTGAGGAAATTTCTTTTGAGACTTTGCCACTGCCA 540
Query 541 AGTAAAGATGCATATCCTCATAGAATTGCCTTTGTTGGGGATTTGGGTCTTACTAGTAAT 600
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 541 AGTAAAGATGCATATCCTCATCGAATTGCCTTTGTTGGGGATATGGGTCTTACTAGTAAC 600
Query 601 ACTACAACCACCATTGACCATTTGATGGAAAACGATCCC-TCATTGGTTATAATTGTTGG 659
|| ||||||||||||||||||||||||||||| || ||| ||| ||||| ||||||||||
Sbjct 601 ACAACAACCACCATTGACCATTTGATGGAAAATGA-CCCTTCACTGGTTTTAATTGTTGG 659
Query 660 GGACTTAACTTATGCAAACCAGTATCGTACTATTGGTGGTAAAGGAG-TTCCATGCTTCT 718
||||||||| |||||||||||||||||||| | |||||| ||||||| || |||||||||
Sbjct 660 GGACTTAACATATGCAAACCAGTATCGTACAACTGGTGGCAAAGGAGCTT-CATGCTTCT 718
Query 719 CATGTTCGTTTCCTGATGCACCTATAAGGGAGACTTATCAACCTCGCTGGGATGCTTGGG 778
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 719 CATGTTCGTTTCCCGATGCACCTATTAGGGAGACGTATCAACCTCGCTGGGATGCCTGGG 778
Query 779 GAAGGTTCATGGAGCCATTGACTTCCAAGGTCCCAACGATGGTCATTGAAGGCAACCATG 838
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAAGGTTCATGGAGCCACTGACTTCCAAGGTCCCAACGATGGTCATTGAAGGCAACCATG 838
Query 839 AGATTGAGCCTCAAGCTTCAGGGATCACCTTTAAGTCATATTCTGAAAGGTTTGCTGTTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 839 AGATTGAGCCTCAAGCTTCAGGGATCACCTTTAAGTCATATTCTGAAAGGTTTTCAGTTC 898
Query 899 CTGCAAGTGAGAGTGGCTCCAACAGCAACTTCTACTATTCTTTTGATGCCGGAGGAGTGC 958
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 CTGCAAGTGAGAGTGGCTCCAACAGCAACTTCTACTATTCTTTTGATGCTGGAGGAGTGC 958
Query 959 ATTTTGTTATGTTGGGTGCATATGTTGATTACAATAACACTGG-GCTGCAATATGCATGG 1017
||||||||||||||||||| ||||||||||||||| ||||||| || ||| |||||||||
Sbjct 959 ATTTTGTTATGTTGGGTGCTTATGTTGATTACAATCACACTGGAGC-GCAGTATGCATGG 1017
Query 1018 CTAAAGGAAGACTTGTCTAAAGTTGATCGCGCTGTGACACCATGGCTGGTTGCAACTATG 1077
||||||||||||||||||||||||||||| || |||||||| ||| |||||||||| |||
Sbjct 1018 CTAAAGGAAGACTTGTCTAAAGTTGATCGTGCAGTGACACCTTGGTTGGTTGCAACAATG 1077
Query 1078 CATCCACCTTGGTACAACAGCTACTCCTCGCATTACCAGGAGTTTGAATGCATGAGGCAG 1137
||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1078 CATCCGCCTTGGTATAACAGCTACTCCTCGCACTACCAAGAGTTTGAATGCATGAGGCAG 1137
Query 1138 GAAATGGAAGAGCTTCTTTACCAATACCGTGTTGACATAGTTTTTGCAGGACATGTACAT 1197
|||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct 1138 GAAATGGAAGAGCTTCTTTACCAACACCGTGTCGACATCGTGTTTGCAGGACATGTACAT 1197
Query 1198 GCATACGAGAGAATGAACCGCATATACAACTACACACTAGACCCATGTGGACCAGTTTAC 1257
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 GCATACGAGAGAATGAACCGCATATACAACTACACACTAGACCCATGTGGGCCAGTTTAC 1257
Query 1258 ATAACAATAGGAGATGGTGGAAACATTGAGAAAGTTGATGTGGACTTTGCTGATGACCCT 1317
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1258 ATAACAATAGGAGATGGTGGAAACATTGAGAAAGTTGATGTGGACTTTGCGGATGATCCT 1317
Query 1318 GGGAA 1322
|||||
Sbjct 1318 GGGAA 1322
> Ahg936040 jgi|Araly1|936040|scaffold_500231.1
Length=965
Score = 870 bits (471), Expect = 0.0
Identities = 644/723 (89%), Gaps = 29/723 (4%)
Strand=Plus/Plus
Query 586 GGTCTTACTAGTAATACTACAACCACCATTGACCATTTGATGGAAAACGATCCC-TCATT 644
|||||||||||||| || ||||||||||||||||||||||||||||| || ||| ||| |
Sbjct 42 GGTCTTACTAGTAACACAACAACCACCATTGACCATTTGATGGAAAATGA-CCCTTCACT 100
Query 645 GGTTATAATTGTTGGGGACTTAACTTATGCAAACCAGTATCGTACTATTGGTGGTAAAGG 704
|||| |||||||||||||| | || |||||||||||||| ||||| | |||||| |||||
Sbjct 101 GGTTTTAATTGTTGGGGACATGACATATGCAAACCAGTACCGTACAACTGGTGGCAAAGG 160
Query 705 AGTTCCATGCTTCTCATGTTCGTTTCCTGATGCACCTATAAGGGAGACTTATCAACCTCG 764
|||| |||||||||||||||||||||| |||||||| || || ||||| |||||||||||
Sbjct 161 AGTTTCATGCTTCTCATGTTCGTTTCCAGATGCACCGATTAGAGAGACGTATCAACCTCG 220
Query 765 CTGGGATGCTTGGGGAAGGTTCATGGAGCCATTGACTTCCAAGGTCCCAACGATGGTCAT 824
|||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 221 TTGGGATGCCTGGGGAAGGTTCATGGAGCCATTGACCTCAAAGGTCCCAACAATGGTAAT 280
Query 825 TGAAGGCAACCATGAGATTGAGCCTCAAGCTTCAGGGATCACCTTTAAGTCATATTCTGA 884
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 281 TGAAGGCAACCATGAGATTGAGCCTCAAGCTTCCGGGATCACCTTTAAGTCATATTCAGA 340
Query 885 AAGGTTTGCTGTTCCTGCAAGTGAGAGTGGCTCCAACAGCAACTTCTACTATTCTTTTGA 944
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 AAGGTTTGCAGTTCCTTCAAGTGAGAGTGGCTCCAACAGCAACTTCTACTATTCTTTTGA 400
Query 945 TGCCGGAGGAGTGCATTTTGTTATGTTGGGTGCATATGTTGATTACAATAACACTGGGCT 1004
|| ||||||||||||||||||||||||||| || | || || || | || ||
Sbjct 401 TGTCGGAGGAGTGCATTTTGTTATGTTGGGAGCGCA-GT--ATG-CA-T------GG-CT 448
Query 1005 GCAATATGCATGGCTAAAGGAAGACTTGTCTAAAGTTGATCGCGCTGTGACACCATGGCT 1064
|| | | | || | | ||||||||||||||||||| | |||||||| |||||
Sbjct 449 --AA-A-G---G---AA-G-A---CTTGTCTAAAGTTGATCGCACAGTGACACCTTGGCT 493
Query 1065 GGTTGCAACTATGCATCCACCTTGGTACAACAGCTACTCCTCGCATTACCAGGAGTTTGA 1124
||||||||| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 494 GGTTGCAACGATGCATCCGCCTTGGTATAACAGCTACTCCTCGCACTACCAAGAGTTTGA 553
Query 1125 ATGCATGAGGCAGGAAATGGAAGAGCTTCTTTACCAATACCGTGTTGACATAGTTTTTGC 1184
||||||||||||||| ||||||||||||||||||||| ||||||| ||| | || |||||
Sbjct 554 ATGCATGAGGCAGGAGATGGAAGAGCTTCTTTACCAACACCGTGTCGACCTTGTGTTTGC 613
Query 1185 AGGACATGTACATGCATACGAGAGAATGAACCGCATATACAACTACACACTAGACCCATG 1244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 614 AGGACATGTACATGCATACGAGAGGATGAACCGCATATACAACTACACACTAGACCCATG 673
Query 1245 TGGACCAGTTTACATAACAATAGGAGATGGTGGAAACATTGAGAAAGTTGATGTGGACTT 1304
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 674 TGGGCCAGTTTACATAACAATAGGAGACGGTGGAAACATTGAGAAAGTTGATGTGGACTT 733
Query 1305 TGC 1307
|||
Sbjct 734 TGC 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5