BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13720.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493541 jgi|Araly1|493541|fgenesh2_kg.7__2974__AT4G13720.1 732 0.0
Ahg484191 jgi|Araly1|484191|fgenesh2_kg.5__183__AT4G13720.1 691 0.0
> Ahg493541 jgi|Araly1|493541|fgenesh2_kg.7__2974__AT4G13720.1
Length=826
Score = 732 bits (396), Expect = 0.0
Identities = 453/480 (94%), Gaps = 6/480 (1%)
Strand=Plus/Plus
Query 296 GGGCCATACATAAAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTG 355
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 350 GGGCCATACATCAAGTGGTTTCTAGAGAAGCTTGGTCATGAAGGTCTGAACAACTTACTG 409
Query 356 ATGGCCTATGAAGATAAATCAGCTTATGCATTGTGCGCATTCTCTTTCTCGCGTGGTCCA 415
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 410 ATGGCCTATGAAGATAAATCAGCTTATGCCTTGTGCGCATTCTCTTTCTCGCGTGGTCCA 469
Query 416 GGTGCTGAACCTCTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCCAGAGGA 475
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 470 GGAGCTGAACCTCTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCAAGAGGA 529
Query 476 CCAACTGATTTCGGATGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACGTATGCA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 530 CCAACTGATTTCGGATGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACTTATGCA 589
Query 536 GAGATGGCAAAGGAAGAAAAGAACAAGATATCACATAGGTACAAGTCTTTAGCATTGGTG 595
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 590 GAGATGGAAAAGGAAGAAAAGAACAAGATATCTCATAGGTACAAGTCTTTAGCATTGGTG 649
Query 596 AAATCTCACTTTAAGGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACCATTTAAAGA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 650 AAATCTCACTTTAAGGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACCATCTAAAGA 709
Query 656 GAACCAGAACTC-ATTCATCATTGTCTTCTGCGTTTGAAGAATGGAGCACCAATCACTCA 714
||||||||| || | | |||||||||| | || |||||||| | |||||| ||| |||||
Sbjct 710 GAACCAGAA-TCCAATGATCATTGTCTCCAGCTTTTGAAGATTTGAGCACTAATTACTCA 768
Query 715 CCAGATTCTTGTTCCTATTCTAAGCTCCTTT-GGGAATATT-GATATTGTAACttttttt 772
||||||||||||||||||||||||||||||| ||| |||| | |||||| ||||||||
Sbjct 769 CCAGATTCTTGTTCCTATTCTAAGCTCCTTTTGGGG-TATTAG-TATTGTGTCTTTTTTT 826
Score = 455 bits (246), Expect = 3e-127
Identities = 280/296 (95%), Gaps = 3/296 (1%)
Strand=Plus/Plus
Query 1 GCTTTCGCTATCTGAGACTGAGACACAGACAATGGCGGCGGCGGCGGCGAAAGCAGCGGT 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1 GCTTTCGCTATCTGAGACTGAGACACAGAAAAT---GGCGGCGGCGGCGAAAGCAGCGGT 57
Query 61 GGTTTTGCCACGGCCGGTGACGTTTGTGACTGGAAATGCTAAGAAGCTCGAAGAAGTCAA 120
|||||||||||||||||||||||||||||| ||||| || || ||||||||||| |||||
Sbjct 58 GGTTTTGCCACGGCCGGTGACGTTTGTGACGGGAAACGCCAAAAAGCTCGAAGAGGTCAA 117
Query 121 AGCTATCATCGGAAATTCCATTCCTTTCAAGTCTCTCAAACTCGATTTGCCTGAGCTCCA 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 118 AGCTATCATCGGAAATTCCATTCCTTTCAAGTCTCTCAAACTCGACCTGCCTGAGCTTCA 177
Query 181 AGGTGAGCCTGAGGATATTTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGGATGG 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 178 AGGTGAGCCTGAGGATATCTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGAATGG 237
Query 241 ACCAGTGCTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGGCTTCCTG 296
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 238 ACCAGTGCTAGTGGAAGATACATGTCTTTGTTTCAATGCTTTGAAAGGGCTTCCTG 293
> Ahg484191 jgi|Araly1|484191|fgenesh2_kg.5__183__AT4G13720.1
Length=943
Score = 691 bits (374), Expect = 0.0
Identities = 462/503 (92%), Gaps = 11/503 (2%)
Strand=Plus/Plus
Query 308 AAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTGATGGCCTATGAA 367
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 420 AAGTGGTTTCTTGAGAAGCTTGGTCATGAAGGTCTGAACGACTTACTGATGGCCTATGAA 479
Query 368 GATAAATCAGCTTATGCATTGTGCGCATTCTCTTTCTCGCGTGGTCCAGGTGCTGAACCT 427
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 480 GATAAATCAGCTTATGCATTGTCCGCATTCTCTTTCTCACTTGGTCCAGGTGCTGAACCT 539
Query 428 CTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCCAGAGGACCAACTGATTTC 487
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCAAGAGGACCAACTGATTTT 599
Query 488 GGATGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACGTATGCAGAGATGGCAAAG 547
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 600 GGGTGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACTTATGCAGAAATGGCAAAG 659
Query 548 GAAGAAAAGAACAAGATATCACATAGGTACAAGTCTTTAGCATTGGTGAAATCTCACTTT 607
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 660 GAAGAAAAGAACAAGATATCTCATAGGTACAAGTCTTTAGCAATGGTGAAATCTCATTTT 719
Query 608 AAGGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACCATTTAAAGAGAACCAGAACTC 667
|| ||||||||||||||||||||||||||||||||||| | |||||||||||| || ||
Sbjct 720 AAAGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACTAGTTAAAGAGAACCC-AA-TC 777
Query 668 ATTCATCATTGTCTTCTGCGTTTGAAGAATGGAGCACCAATCACTCACCAGATTCTTGTT 727
|| || | | |||| | || |||||||| | |||||| |||||||||||||||||||||
Sbjct 778 AT-CA-C-T-GTCTCCAGCTTTTGAAGATTTGAGCACTGATCACTCACCAGATTCTTGTT 833
Query 728 CCTATTCTAAGCTCCTTTG-GGAATATTGATATTGTAAC-ttttt-ttttCCTCAAATAC 784
||||||||||||||||||| ||| |||| ||||||| | ||||| ||||| |||||||
Sbjct 834 CCTATTCTAAGCTCCTTTGAGGA-TATTAATATTGTTTCCTTTTTGTTTTC-TCAAATAT 891
Query 785 AAGTAGAAACCATGGATTGCAAG 807
||||||||||||||||||| |||
Sbjct 892 AAGTAGAAACCATGGATTGAAAG 914
Score = 418 bits (226), Expect = 3e-116
Identities = 277/300 (92%), Gaps = 9/300 (3%)
Strand=Plus/Plus
Query 1 GCTTTCGCTATCTGAG-ACTGAGACACAGACAATGGCGGCGGCGGCGGCGAAAGCAGCGG 59
|||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 GCTTTCGCTATCTGAGAACTGAGACACAGAAAAT------GGCGGCGGCGAAAGCAGCGG 54
Query 60 TGGTTTTGCCACGGCCGGTGACGTTTGTGACTGGAAATGCTAAGAAGCTCGAAGAAGTCA 119
|||||||||||||||||||||| ||||||| |||||| || |||||||||||||||||||
Sbjct 55 TGGTTTTGCCACGGCCGGTGACTTTTGTGATTGGAAACGCCAAGAAGCTCGAAGAAGTCA 114
Query 120 AAGCTATCATCGGAAATTCCATTCCTTTCAAGTCTCTCAAACTCGATTTGCCTGAGCTCC 179
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 115 AAGCTATCATCGGCAATTCCATTCCTTTCAAGTCTCTCAAACTCGACCTGCCTGAGCTTC 174
Query 180 AAGGTGAGCCTGAGGATATTTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGGATG 239
||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 175 AAGGTGATCCTGAGGATATCTCCAAGGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGAATG 234
Query 240 GACCAGTGCTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGG-CTTCCTGGG 298
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 235 GACCAGTGCTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAA-GGGACGTCCTGGG 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5