BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13730.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947046 jgi|Araly1|947046|scaffold_703275.1 2348 0.0
> Ahg947046 jgi|Araly1|947046|scaffold_703275.1
Length=1437
Score = 2348 bits (1271), Expect = 0.0
Identities = 1381/1433 (96%), Gaps = 12/1433 (1%)
Strand=Plus/Plus
Query 12 CAAAATCAAAATCCATGGCCAAGAAAGGTATCCCAGAGTGGCTCAACAGTTCTCTCTGG- 70
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 CAAAATCAAAATCCATGGCCAAGAAAGGTATCCCAGAGTGGCTCAACAGTTCTCTCTGGT 66
Query 71 --T-C-CTCCT-CTCCT-C-C-CATCGACGATCGCCACCTCCGCAATCCTGCC-GCCACT 121
| | ||||| ||||| | | |||||||||||||||||||||||||||| || ||||||
Sbjct 67 CTTCCGCTCCTCCTCCTCCTCTCATCGACGATCGCCACCTCCGCAATCCT-CCGGCCACT 125
Query 122 TCCATCACCCCTCCATCTCCTCCGATCGTCGAGCGTCCTCCTTTTTCTTCCTCTCCCTCC 181
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TCCGTCACCCCTCCATCTCCTCCGATCGTCGAGCGTCCTCCTTTTTCTTCCTCTCCCTCC 185
Query 182 GCGATTTCCACCGCACCAGCTCCTCCTCTTCCTGTTCGTCCTCCTTCCAAATCTGAGATT 241
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 186 GCGATTACCACCGCACCAGCTCCGACTCTTCCTGTTCGTCCTCCTTCCAAATCTGAGATT 245
Query 242 AACGATTTGCAGAATGGGAGTGGTAACGATGGTGCTGGAATTGAAACTCCCGCAGTTTCT 301
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||
Sbjct 246 AACGATTTGCAGAATGGGAGTGGTAATGATGGAGCTGGAAGCGAAACTCCCGCAGCTTCT 305
Query 302 TCTGTTGAAGATGTTTCTCGAAAAGCGCAGGTCGTGGCTGAGTTATCGAAGAAGGTGATA 361
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 306 TCTGTTGAAGATGTTTCTCGAAAAGCGCAGGTCGTTGCTGAGTTATCGAAGAAGGTGATA 365
Query 362 GACTTGAAGGAATTGAGGAAGATAGCTTCACAAGGTCTACCTGATGATGCTGGAATTCGA 421
||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 366 GACTTAAAGGAATTGAGGAAAATTGCTTCACAAGGTCTACCTGATGATGCTGGAATTCGC 425
Query 422 TCCATTGTTTGGAAGCTTTTGTTGGATTATTTGTCACCGGATCGCTCTCTGTGGTCTTCT 481
|||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||||
Sbjct 426 TCCATTGTTTGGAAGCTTTTATTGGGTTATCTGTCACCGGATCGCTCTCTCTGGTCTTCT 485
Query 482 GAGTTAGCTAAGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAACCCT 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 486 GAGTTAGCTAAGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAATCCT 545
Query 542 TCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGATCCAAAAATC 601
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 546 TCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGACCCAAAAATC 605
Query 602 GAAAGCCCTGGTGCCCTTTCAAGGTCAGAGATTACTCATGAGGATCATCCCTTAAGTCTT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GAAAGCCCTGGTGCCCTTTCAAGGTCAGAGATTACTCATGAGGATCATCCCTTAAGTCTT 665
Query 662 GGAACAACAAGCTTATGGAATAATTTTTTCAAGGACACAGAAGTTTTGGAACAAATAGAA 721
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 666 GGAACAACAAGCTTGTGGAATAATTTTTTCAAGGACACAGAAGTCTTGGAACAAATAGAC 725
Query 722 CGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCA 781
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 726 CGCGATGTGATGCGTACTCATCCAGACATGCACTTTTTCTCTGGGGATTCAGCGGTTGCA 785
Query 782 AAATCTAATCAGGATGCTTTGAAGAACATTTTGACTATTTTCGCAAAGTTGAATCCTGGC 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CAATCTAATCAGGATGCTTTGAAGAACATTTTGACTATTTTCGCAAAGTTGAATCCTGGC 845
Query 842 ATCAGATATGTACAAGGGATGAATGAGATATTGGCACCTATTTTCTACATCTTCAAAAAT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 846 ATCAGATATGTACAAGGGATGAATGAGATATTGGCACCTATTTTCTACATCTTTAAAAAT 905
Query 902 GACCCGGATAAAGGAAATGCAGCATACGCTGAATCAGATGCATTTTTCTGTTTTGTTGAA 961
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 906 GACCCGGATAAAGGAAATGCTGCTTATGCTGAATCAGATGCATTTTTCTGTTTTGTTGAA 965
Query 962 TTGATGAGTGGGTTTCGAGATAATTTCTGTCAACAACTAGATAACAGTGTTGTGGGTATA 1021
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 966 TTGATGAGTGGGTTTCGAGATAATTTCTGTCAACAACTTGATAACAGTGTTGTGGGTATA 1025
Query 1022 CGTTACACTATAACAAGACTGTCGTTGCTCTTGAAGCATCATGATGAAGAACTTTGGCGT 1081
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1026 CGTTACACTATAACAAGACTGTCGTTGCTCCTGAAGCATCATGATGAAGAACTTTGGCGT 1085
Query 1082 CATTTAGAAGTCACAACCAAAATAAACCCGCAATTCTATGCATTCAGATGGATCACACTC 1141
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CATTTAGAAGTCACAACTAAAATAAACCCGCAATTCTATGCATTCAGATGGATCACACTC 1145
Query 1142 CTATTGACTCAAGAATTCAATTTCGTGGAAAGCCTTCACATCTGGGACACACTCTTAAGC 1201
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 CTATTGACTCAAGAGTTCAATTTCGTGGAAAGCCTTCACATCTGGGACACACTCTTAAGC 1205
Query 1202 GACCCGGAAGGTCCTCAGGAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTT 1261
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1206 GACCCCGAAGGTCCTCAGGAAACGCTACTGCGGATATGCTGTGCAATGTTGATTCTAGTT 1265
Query 1262 CGAAGGCGTTTGCTTGCTGGAGATTTTACGTCGAACCTCAAACTTCTTCAGAACTATCCT 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 CGAAGGCGTTTGCTTGCTGGAGATTTTACGTCGAACCTCAAACTTCTTCAGAACTATCCT 1325
Query 1322 CCTACAAACATCAGTCACATGCTCTATGTGGCAGACAAATTACGCACTAAATAAAAATCT 1381
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1326 CCTACAAACATCAGTCATATGCTCTATGTGGCAGACAAATTACGCACTAAATAAAGATCT 1385
Query 1382 TCAGGTTAATAATATTTCACTCCCTACTCCTTTATAAAACTCTGCAACTTTCG 1434
||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1386 TCAGGTTAATAATATTTCACTCCCTTCTCCTTTATAAA-CTCTGCAACTTTCG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5