BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13770.1
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493537 jgi|Araly1|493537|fgenesh2_kg.7__2970__AT4G13770.1 2514 0.0
Ahg896231 jgi|Araly1|896231|Al_scaffold_0005_197 1170 0.0
Ahg896244 jgi|Araly1|896244|Al_scaffold_0005_210 630 8e-180
Ahg322596 jgi|Araly1|322596|fgenesh1_pm.C_scaffold_5000140 582 2e-165
Ahg333169 jgi|Araly1|333169|fgenesh1_pm.C_scaffold_86000001 577 1e-163
> Ahg493537 jgi|Araly1|493537|fgenesh2_kg.7__2970__AT4G13770.1
Length=1660
Score = 2514 bits (1361), Expect = 0.0
Identities = 1482/1542 (96%), Gaps = 2/1542 (0%)
Strand=Plus/Plus
Query 1 GTAACACTCAAAAGTAGTAACAACTAAGAATGGAAGATATCATCATCGGCGTGGTGGCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAACACTCAAAAGTAGTAACAACTAAGAATGGAAGATATCATCATCGGCGTGGTGGCTC 60
Query 61 TCGCCGCGGTTCTCCTTTTCTTCCTCTACCAAAAACCGAAAACCAAACGGTACAAGCTAC 120
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 61 TCGCCGCGGTTCTCCTCTTCTTCCTTTACCAAAAACCGAAAACCAAACGGTACAAGCTGC 120
Query 121 CTCCAGGGCCATCACCACTTCCGGTGATCGGAAACCTCCTTCAGCTTCAGAAGCTTAACC 180
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CTCCTGGGCCATCACCACTTCCGGTGATTGGAAACCTCCTTCAGCTTCAGAAGCTTAACC 180
Query 181 CACAACGCTTCTTCGCTGGATGGGCCAAAAAATACGGTCCAATCTTGTCATACAGGATAG 240
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 181 CACAACGCTTCTTCGCTGGATGGGCCAAAAAGTACGGACCAATCTTGTCATACAGGATAG 240
Query 241 GAAGCAGAACAATGGTGGTGATATCTTCAGCTGAGCTAGCTAAAGAGCTTCTCAAGACGC 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GAAGCAGAACAATGGTTGTGATATCTTCAGCTGAGCTAGCTAAAGAGCTTCTCAAAACGC 300
Query 301 AAGATGTCAACTTTGCGGACCGGCCTCCACATCGTGGCCATGAGTTCATATCCTACGGCA 360
|||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct 301 AAGATGTCAACTTTGCGGACCGACCTCCGCACCGTGGCCACGAGTTCATATCCTACGGCA 360
Query 361 GGCGTGACATGGCATTAAACCACTACACACCGTATTACCGAGAGATAAGGAAGATGGGGA 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCGTGACATGGCATTGAACCACTACACACCGTATTACCGAGAGATAAGGAAGATGGGGA 420
Query 421 TGAACCACTTGTTCTCACCAACACGTGTGGCCACCTTTAAGCATGTACGAGAGGAAGAGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGAACCACTTGTTCTCACCAACACGTGTGGCCACCTTTAAGCATGTACGAGAGGAAGAGG 480
Query 481 CTAGGAGGATGATGGATAAGATCAACAAGGCCGCGGATAAATCCGAAGTAGTCGATATAA 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 CTAGGAGGATGATGGATAAGATCAACAAGGCCGCGGATAAATCCGAAGTGGTCGATATAA 540
Query 541 GTGAGCTTATGTTGACCTTCACGAACTCGGTTGTGTGTAGACAAGCGTTCGGGAAGAAGT 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCGAGCTTATGTTGACCTTCACGAACTCGGTTGTGTGTAGACAAGCGTTCGGGAAGAAGT 600
Query 601 ACAATGAAGATGGAGAAGAGATGAAGAGGTTCATCAAGATTCTTTATGGGACTCAAAGCG 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAATGAAGATGGGGAAGAGATGAAGAGGTTCATCAAGATTCTTTATGGGACTCAAAGCG 660
Query 661 TTTTGGGGAAGATCTTT-TTCTCTGATTTTTTCCCATATTGTGGCTTTCTTGATGATTTA 719
||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 TTTTGGGGAAGAT-TTTCTTCTCTGATTTTTTCCCATATTGTGGCTTTCTGGATGATTTG 719
Query 720 TCAGGCCTCACAGCTTATATGAAAGAGTGTTTCGAAAGACAAGACACTTATATTCAAGAG 779
||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 720 TCAGGACTCACAGCTTATATGAAAGAGTGTTTCGAACGACAAGACACTTATGTTCAAGAG 779
Query 780 GTTGTCAATGAGACGCTTGATCCTAAGAGAGTCAAGCCCGAAACCGAGAGCATGATTGAT 839
||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 780 GTTATCAATGAGACGCTTGATCCCAAGAGGGTCAAGCCCGAAACCGAGAGCATGATCGAT 839
Query 840 CTCTTGATGGGGATCTACAAAGAACAACCTTTCGCTTCTGAGTTTACTGTAGATAATGTC 899
|||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 840 CTCTTGATGGAGATCTTCAAAGAACAACCTTTCGCTTCTGAGTTCACTGTAGATAATGTC 899
Query 900 AAAGCCGTCATCTTGGATATTGTAGTGGCGGGAACAGATACTGCAGCTGCGGCGGTTGTG 959
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 900 AAAGCCGTGATCTTGGATATTGTAGTGGCGGGAACAGATACCGCAGCTGCGGCAGTTGTG 959
Query 960 TGGGGGATGACGTATCTAATGAAGTACCCACAAGTGTTGAAGAAAGCTCAAGCAGAAGTG 1019
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 TGGGGGATGACATATCTAATGAAGTACCCTCAAGTGTTGAAGAAAGCTCAAGCAGAAGTG 1019
Query 1020 AGAGAGTATATGAAAGAGAAAGGTTCAACGTTCGTTACTGAAGACGATGTCAAGAACCTT 1079
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1020 AGAGAGTATATGAAAGAGAAAGGTTCAACGTTTGTTACTGAAGACGACGTCAAGAACCTT 1079
Query 1080 CCTTACTTCAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAACCAGTGATTCCTCTCCTT 1139
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1080 CCTTACTTCAGAGCCTTAGTTAAAGAAACCTTAAGGATCGAACCGGTGATTCCTCTCCTT 1139
Query 1140 ATCCCTCGTGCTTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCCGCAGGAACA 1199
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1140 ATCCCTCGTGCTTGCATTCAAGACACCAAGATCGCCGGTTACGACATCCCGGCAGGGACA 1199
Query 1200 ACGGTCAACGTCAACGCGTGGGCCGTGTCACGTGACGAGAAAGAATGGGGACCGAACCCT 1259
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1200 ACGGTCAACGTCAACGCGTGGGCCGTGTCACGTGACGAGAAGGAGTGGGGACCGAACCCT 1259
Query 1260 GATGAGTTTAGGCCCGAGAGGTTTCTTGAGAAGGAAGTTGACTTCAAAGGCACGGACTAC 1319
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1260 GACGAGTTCAGGCCCGAGAGGTTTCTTGAGAAGGATGTTGACTTCAAAGGCACGGACTAC 1319
Query 1320 GAGTTTATACCGTTCGGGTCAGGCCGGAGAATGTGCCCGGGAATGCGTCTTGGGGCCGCG 1379
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1320 GAGTTTATACCGTTCGGGTCAGGCCGGAGAATGTGCCCTGGAATGCGTCTTGGTGCGGCG 1379
Query 1380 ATGCTTGAGGTTCCTTATGCGAACCTTCTCCTCAGCTTCAACTTTAAACTTCCTAATGGG 1439
||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1380 ATGCTCGAGGTTCCTTATGTGAACCTTCTTCTCAACTTCAACTTTAAACTTCCTAATGGC 1439
Query 1440 ATGAAACCAGATGATATCAATATGGATGTCATGACTGGTCTTGCTATGCACAAGTCGCAG 1499
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1440 ATGAAACCAGATGATATCAATATGGATGTCATGACTGGTCTCGCTATGCACAAGTCGCAG 1499
Query 1500 CATCTCAAGCTTGTTCCAGAGAAAGTGAACAAGTATTAGCTA 1541
||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1500 CATCTGAAGCTTGTTCCCGAGAAAGTGAACAAGTACTAGCTA 1541
> Ahg896231 jgi|Araly1|896231|Al_scaffold_0005_197
Length=1236
Score = 1170 bits (633), Expect = 0.0
Identities = 797/873 (91%), Gaps = 24/873 (3%)
Strand=Plus/Plus
Query 480 GCTAGGAGGATGATGGATAAGATCAACAAGGCCGCGGATAAATCCGAAGTAGTCGATATA 539
|||||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 385 GCTAGGAGAATGATGAATAAGATCAACAAGGCCGCCGATAAATCCGAAGTGGTCGATATA 444
Query 540 AGTGAGCTTATGTTGACCTTCACGAACTCGGTTGTGTGTAGACAAGCGTTCGGGAAGAAG 599
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 445 AGCGAGCTTATGTTGACGTTCACGAACTCTGTTGTGTGTAGACAAGCGTTCGGGAAGAAG 504
Query 600 TACAATGAAGATGGAGAAGAGATGAAGAGGTTCATCAAGATTCTTTATGGGACTCAAAGC 659
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 505 TACAATGAAGATGGGGAAGAGATGAAGAGGTTCATCAAGATTATTTATGGGACTCAAAGC 564
Query 660 GTTTTGGGGAAGATCTTTTTCTCTGATTTTTTCCCATATTGTGGCTTTCTTGATGATTTA 719
||||||||||| || ||||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 565 GTTTTGGGGAATATTTTTTTCTCTGATTTTTTCCCATATTCTAGTTTTCTCGATGATTTG 624
Query 720 TCAGGCCTCACAGCTTATATGAAAGAGTGTTTCGAAAGACAAGACACTTATATTCAAGAG 779
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 625 TCAGGCCTCACAGTTTATATGAAAGAGTGTTTTGAAAGACAAGACACTTATATTCAAGAG 684
Query 780 GTTGTCAATGAGACGCTTGATCCTAAGAGAGT-CAAGCCCGAAACCGAGAGCATGATTGA 838
||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| ||
Sbjct 685 ATTGTCAATGAGACTCTTGATCCCAAGAG-GTTCAAGCCCGAAACCGAGAGCATGATCGA 743
Query 839 TCTCTTGATGGGGATCTACAAAGAACAACCTTTCGCTTCTGAGTTTACTGTAGATAATGT 898
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 744 TCTCTTGATGGAGATCTACAAAGAACAACCTTTCGCTTCTGAGTTCACTGTAGATAATG- 802
Query 899 CAAAGCCGTCATCTTGGATATTGTAGTGGCGGGAACAGATACTGCAGCTGCGGCGGTTGT 958
| | ||| | || || | | |||| || ||||| |||||||||||||||||
Sbjct 803 -A------T-ATC--G--TA--GT-G-G-CGGGTACGGATACAGCAGCTGCGGCGGTTGT 845
Query 959 GTGGGGGATGACGTATCTAATGAAGTACCCACAAGTGTTGAAGAAAGCTCAAGCAGAAGT 1018
|||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 846 GTGGGGAATGACGTATCTAATGAAGTACCCTCAAGTGATGAAGAATGCTCAAGCAGAAGT 905
Query 1019 GAGAGAGTATATGAAAGAGA-AAGG-TTCAACGTTCGTTACTGAAGACGATGTCAAGAAC 1076
|||||| ||||||||||| | |||| || ||| |||||||||||||| || |||||||||
Sbjct 906 GAGAGACTATATGAAAGA-ACAAGGGTT-AACATTCGTTACTGAAGAAGACGTCAAGAAC 963
Query 1077 CTTCCTTACTTCAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAACCAGTGATTCCTCTC 1136
|||||||||||||||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 964 CTTCCTTACTTCAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAGCCGGTCATACCTCTC 1023
Query 1137 CTTATCCCTCGTGCTTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCCGCAGGA 1196
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1024 CTTATCCCTCGTGCGTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCGGCCGGG 1083
Query 1197 ACAACGGTCAACGTCAACGCGTGGGCCGTGTCACGTGACGAGAAAGAATGGGGACCGAAC 1256
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1084 ACAACGGTCAACGTCAACGCCTGGGCCGTGTCACGTGACGAGAAGGAGTGGGGACCGAAC 1143
Query 1257 CCTGATGAGTTTAGGCCCGAGAGGTTTCTTGAGAAGGAAGTTGACTTCAAAGGCACGGAC 1316
||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1144 CCTGACGAGTTCAGGCCCGAGAGGTTTCTTGAGAAGGAGGTTGACTTCAAAGGCACAGAC 1203
Query 1317 TACGAGTTTATACCGTTCGGGTCAGGCCGGAGA 1349
|| ||||||||||| ||||||||||||||||||
Sbjct 1204 TATGAGTTTATACCATTCGGGTCAGGCCGGAGA 1236
Score = 398 bits (215), Expect = 9e-110
Identities = 255/274 (93%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 173 GCTTAACCCACAACGCTTCTTCGCTGGATGGGCCAAAAAATACGGTCCAATCTTGTCATA 232
||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 111 GCTTAACCCACAACGGTTCTTTGCTGGATGGGCCAAGAAATACGGACCAATCTTGTCATA 170
Query 233 CAGGATAGGAAGCAGAACAATGGTGGTGATATCTTCAGCTGAGCTAGCTAAAGAGCTTCT 292
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 171 CAAGATAGGAACCAGAACAATGGTGGTGATATCTTCAGCTGAGTTAGCTAAAGAGCTTCT 230
Query 293 CAAGACGCAAGATGTCAACTTTGCGGACCGGCCTCCACATCGTGGCCATGAGTTCATATC 352
||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 231 CAAGATGCAAGATGTCAACTTTGCCGACCGGCCTCCACACCGTGGCCACGAGTTCATATC 290
Query 353 CTACGGCAGGCGTG---ACATGGCATTAAACCACTACACACCGTATTACCGAGAGATAAG 409
|||| || |||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct 291 CTACTGCCGGCGTGATCACATGGCATTGAACCACTACACACCTTATTACCGAGAGATAAG 350
Query 410 GAAGATGGGGATGAACCACTTGTTCTCACCAACA 443
|||||||||||||||||||||||||||||| |||
Sbjct 351 GAAGATGGGGATGAACCACTTGTTCTCACCCACA 384
> Ahg896244 jgi|Araly1|896244|Al_scaffold_0005_210
Length=813
Score = 630 bits (341), Expect = 8e-180
Identities = 394/420 (94%), Gaps = 2/420 (0%)
Strand=Plus/Plus
Query 480 GCTAGGAGGATGATGGATAAGATCAACAAGGCCGCGGATAAATCCGAAGTAGTCGATATA 539
|||||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 385 GCTAGGAGAATGATGAATAAGATCAACAAGGCCGCCGATAAATCCGAAGTGGTCGATATA 444
Query 540 AGTGAGCTTATGTTGACCTTCACGAACTCGGTTGTGTGTAGACAAGCGTTCGGGAAGAAG 599
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 445 AGCGAGCTTATGTTGACGTTCACGAACTCTGTTGTGTGTAGACAAGCGTTCGGGAAGAAG 504
Query 600 TACAATGAAGATGGAGAAGAGATGAAGAGGTTCATCAAGATTCTTTATGGGACTCAAAGC 659
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 505 TACAATGAAGATGGGGAAGAGATGAAGAGGTTCATCAAGATTATTTATGGGACTCAAAGC 564
Query 660 GTTTTGGGGAAGATCTTTTTCTCTGATTTTTTCCCATATTGTGGCTTTCTTGATGATTTA 719
||||||||||| || ||||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 565 GTTTTGGGGAATATTTTTTTCTCTGATTTTTTCCCATATTCTAGTTTTCTCGATGATTTG 624
Query 720 TCAGGCCTCACAGCTTATATGAAAGAGTGTTTCGAAAGACAAGACACTTATATTCAAGAG 779
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 625 TCAGGCCTCACAGTTTATATGAAAGAGTGTTTTGAAAGACAAGACACTTATATTCAAGAG 684
Query 780 GTTGTCAATGAGACGCTTGATCCTAAGAGAGT-CAAGCCCGAAACCGAGAGCATGATTGA 838
||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| ||
Sbjct 685 ATTGTCAATGAGACTCTTGATCCCAAGAG-GTTCAAGCCCGAAACCGAGAGCATGATCGA 743
Query 839 TCTCTTGATGGGGATCTACAAAGAACAACCTTTCGCTTCTGAGTTTACTGTAGATAATGT 898
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 744 TCTCTTGATGGAGATCTACAAAGAACAACCTTTCGCTTCTGAGTTCACTGTAGATAATGT 803
Score = 398 bits (215), Expect = 9e-110
Identities = 255/274 (93%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 173 GCTTAACCCACAACGCTTCTTCGCTGGATGGGCCAAAAAATACGGTCCAATCTTGTCATA 232
||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 111 GCTTAACCCACAACGGTTCTTTGCTGGATGGGCCAAGAAATACGGACCAATCTTGTCATA 170
Query 233 CAGGATAGGAAGCAGAACAATGGTGGTGATATCTTCAGCTGAGCTAGCTAAAGAGCTTCT 292
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 171 CAAGATAGGAACCAGAACAATGGTGGTGATATCTTCAGCTGAGTTAGCTAAAGAGCTTCT 230
Query 293 CAAGACGCAAGATGTCAACTTTGCGGACCGGCCTCCACATCGTGGCCATGAGTTCATATC 352
||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 231 CAAGATGCAAGATGTCAACTTTGCCGACCGGCCTCCACACCGTGGCCACGAGTTCATATC 290
Query 353 CTACGGCAGGCGTG---ACATGGCATTAAACCACTACACACCGTATTACCGAGAGATAAG 409
|||| || |||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct 291 CTACTGCCGGCGTGATCACATGGCATTGAACCACTACACACCTTATTACCGAGAGATAAG 350
Query 410 GAAGATGGGGATGAACCACTTGTTCTCACCAACA 443
|||||||||||||||||||||||||||||| |||
Sbjct 351 GAAGATGGGGATGAACCACTTGTTCTCACCCACA 384
Score = 141 bits (76), Expect = 2e-32
Identities = 102/114 (89%), Gaps = 3/114 (3%)
Strand=Plus/Plus
Query 30 ATGGAAGATATCATCATCGGCGTGGTGGCTCTCGCCGCGGTTCTCCTTTTCTTCCTCTAC 89
||||||| || ||||||||||| ||||||||||||||||||||||| |||||| | |||
Sbjct 1 ATGGAAG--AT-ATCATCGGCGTCGTGGCTCTCGCCGCGGTTCTCCTCTTCTTCATGTAC 57
Query 90 CAAAAACCGAAAACCAAACGGTACAAGCTACCTCCAGGGCCATCACCACTTCCG 143
||||||||||||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct 58 CAAAAACCGAAAACCAAACGGTACAAGCTGCCTCCTGGACCATCTCCGCTTCCG 111
> Ahg322596 jgi|Araly1|322596|fgenesh1_pm.C_scaffold_5000140
Length=498
Score = 582 bits (315), Expect = 2e-165
Identities = 447/508 (88%), Gaps = 19/508 (4%)
Strand=Plus/Plus
Query 1029 ATGAAAG-AGAAAGGTTCAACGTTCGTTACTGAAGACGATGTCAAGAACCTTCCTTACTT 1087
||||||| | || |||| ||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1 ATGAAAGAACAAGGGTT-AACATTCGTTACTGAAGAAGACGTCAAGAACCTTCCTTACTT 59
Query 1088 CAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAACCAGTGATTCCTCTCCTTATCCCTCG 1147
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct 60 CAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAGCCGGTCATACCTCTCCTTATCCCTCG 119
Query 1148 TGCTTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCCGCAGGAACAACGGTCAA 1207
||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 120 TGCGTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCGGCCGGGACAACGGTCAA 179
Query 1208 CGTCAACGCGTGGGCCGTGTCACGTGACGAGAAAGAATGGGGACCGAACCCTGATGAGTT 1267
||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 180 CGTCAACGCCTGGGCCGTGTCACGTGACGAGAAGGAGTGGGGACCGAACCCTGACGAGTT 239
Query 1268 TAGGCCCGAGAGGTTTCTTGAGAAGGAAGTTGACTTCAAAGGCACGGACTACGAGTTTAT 1327
|||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 240 CAGGCCCGAGAGGTTTCTTGAGAAGGAGGTTGACTTCAAAGGCACAGACTATGAGTTTAT 299
Query 1328 ACCGTTCGGGTCAGGCCGGAGAATGTGCCCGGGA-ATGCGT-C-TTGG-GGCCGCGATGC 1383
||| |||||||||||||||||||||| | | ||||| | || || | || |
Sbjct 300 ACCATTCGGGTCAGGCCGGAGAATGTACGTTCCATATGCGAACCTTCTTGGT-GAGA--C 356
Query 1384 TTGAGGTTCCTTATGCGAACCTTCTCCTCAGCTTCAACTTTAAACTTCCTAATGGGATGA 1443
| ||| ||| | | | |||| |||| ||||||||| |||||||||||||||||||
Sbjct 357 --G-GGTG--TTA--C-A-C-TTCTTCTCAACTTCAACTTCAAACTTCCTAATGGGATGA 406
Query 1444 AACCAGATGATATCAATATGGATGTCATGACTGGTCTTGCTATGCACAAGTCGCAGCATC 1503
|| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 407 AAGCAGATGAGATCAATATGGATGTCATGACGGGTCTTGCTATGCATAAGTCGCAGCATC 466
Query 1504 TCAAGCTTGTTCCAGAGAAAGTGAACAA 1531
||||||||||||| ||||||||||||||
Sbjct 467 TCAAGCTTGTTCCCGAGAAAGTGAACAA 494
> Ahg333169 jgi|Araly1|333169|fgenesh1_pm.C_scaffold_86000001
Length=498
Score = 577 bits (312), Expect = 1e-163
Identities = 446/508 (88%), Gaps = 19/508 (4%)
Strand=Plus/Plus
Query 1029 ATGAAAG-AGAAAGGTTCAACGTTCGTTACTGAAGACGATGTCAAGAACCTTCCTTACTT 1087
||||||| | || |||| ||| |||||||||||||| || |||| |||||||||||||||
Sbjct 1 ATGAAAGAACAAGGGTT-AACATTCGTTACTGAAGAAGACGTCAGGAACCTTCCTTACTT 59
Query 1088 CAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAACCAGTGATTCCTCTCCTTATCCCTCG 1147
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct 60 CAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAGCCGGTCATACCTCTCCTTATCCCTCG 119
Query 1148 TGCTTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCCGCAGGAACAACGGTCAA 1207
||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 120 TGCGTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCGGCCGGGACAACGGTCAA 179
Query 1208 CGTCAACGCGTGGGCCGTGTCACGTGACGAGAAAGAATGGGGACCGAACCCTGATGAGTT 1267
||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 180 CGTCAACGCCTGGGCCGTGTCACGTGACGAGAAGGAGTGGGGACCGAACCCTGACGAGTT 239
Query 1268 TAGGCCCGAGAGGTTTCTTGAGAAGGAAGTTGACTTCAAAGGCACGGACTACGAGTTTAT 1327
|||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 240 CAGGCCCGAGAGGTTTCTTGAGAAGGAGGTTGACTTCAAAGGCACAGACTATGAGTTTAT 299
Query 1328 ACCGTTCGGGTCAGGCCGGAGAATGTGCCCGGGA-ATGCGT-C-TTGG-GGCCGCGATGC 1383
||| |||||||||||||||||||||| | | ||||| | || || | || |
Sbjct 300 ACCATTCGGGTCAGGCCGGAGAATGTACGTTCCATATGCGAACCTTCTTGGT-GAGA--C 356
Query 1384 TTGAGGTTCCTTATGCGAACCTTCTCCTCAGCTTCAACTTTAAACTTCCTAATGGGATGA 1443
| ||| ||| | | | |||| |||| ||||||||| |||||||||||||||||||
Sbjct 357 --G-GGTG--TTA--C-A-C-TTCTTCTCAACTTCAACTTCAAACTTCCTAATGGGATGA 406
Query 1444 AACCAGATGATATCAATATGGATGTCATGACTGGTCTTGCTATGCACAAGTCGCAGCATC 1503
|| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 407 AAGCAGATGAGATCAATATGGATGTCATGACGGGTCTTGCTATGCATAAGTCGCAGCATC 466
Query 1504 TCAAGCTTGTTCCAGAGAAAGTGAACAA 1531
||||||||||||| ||||||||||||||
Sbjct 467 TCAAGCTTGTTCCCGAGAAAGTGAACAA 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65096228705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5