BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13780.1
Length=2687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493536 jgi|Araly1|493536|fgenesh2_kg.7__2969__AT4G13780.1 4423 0.0
Ahg312128 jgi|Araly1|312128|fgenesh1_pm.C_scaffold_1000908 2148 0.0
Ahg315394 jgi|Araly1|315394|fgenesh1_pm.C_scaffold_2000427 632 4e-180
> Ahg493536 jgi|Araly1|493536|fgenesh2_kg.7__2969__AT4G13780.1
Length=2691
Score = 4423 bits (2395), Expect = 0.0
Identities = 2597/2694 (96%), Gaps = 16/2694 (1%)
Strand=Plus/Plus
Query 1 AGCTTCTCTGATTCGTCTTTCTCCTCTGTCTCTGACTCTTCGCGAAAACCCTAATTAGCT 60
||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AGCCTCTCTGCTTCGTCTTTCTCCTCTATCTCTGACTCTTCGCGAAAACCCTAATTAGCT 60
Query 61 TTGTGGTCTTGTTGTTTTCGCCATGGAAGACGACGGCAAGAGCAGCCCCAAGTTACCGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTGGTCTTGTTGTTTTCGCCATGGAAGACGACGGCAAGAGCAGCCCCAAGTTACCGAT 120
Query 121 CCCTGGAAAGAGAAATATACTAATCACCAGTGCTTTGCCTTACGTCAACAACGTTCCTCA 180
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCTGGCAAGAGAAATATATTAATCACCAGTGCTTTGCCTTACGTCAACAACGTTCCTCA 180
Query 181 TCTCGGAAACATCATCGGATGTGTTCTGAGCGCTGATGTGTATGCTAGATACTGTCGTCT 240
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 181 TCTCGGAAACATCATCGGATGTGTTCTTAGTGCTGATGTGTATGCTAGATACTGTCGTCT 240
Query 241 CCGTGGCTATAATGCGATTTACATATGTGGAACCGATGAATATGGGACTGCAACTGAGAC 300
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGTGGCTATAATGCGATATATATATGTGGAACCGATGAATATGGGACTGCAACTGAGAC 300
Query 301 CAAAGCTTTGGAGGAGAATTGCACCCCCAAGGAAATCTGTGACAAGTACCATGCCATTCA 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 CAAAGCTTTGGAGGAGAATTGCACTCCCAAGGAAATCTGTGACAAGTACCATGCCATTCA 360
Query 361 TAAAGAAGTTTATGACTGGTTTGGTATAAGTTTTGACAAGTTTGGGCGAACTTCAACTCC 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TAAAGAAGTTTATGACTGGTTTGATATAAGTTTTGACAAGTTTGGGCGAACTTCAACTCC 420
Query 421 AGAACAGACTGAGGTGTGCCAAGCAATTTTCAACAAGTTGTGGGACAACAAGTGGCTTTC 480
|||||||||||| ||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct 421 AGAACAGACTGAAGTGTGTCAAGCAATTTTCAAGAAGTTGTGGGATAATAAGTGGCTTTC 480
Query 481 AGAGAACACCATGCAGCAGCTTTACTGCGATACATGCAAGAAGTTCTTAGCTGACCGGCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAGAACACCATGCAGCAGCTTTACTGCGATACATGCAAGAAGTTCTTAGCTGACCGGCT 540
Query 541 TGTTGAGGGTTCTTGTCCGTTCGAAGGATGTAATTATGATTCTGCTCGTGGAGATCAGTG 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTTGAGGGTTCTTGTCCGTTTGAAGGATGTAATTATGATTCTGCTCGTGGAGATCAGTG 600
Query 601 CGAAAAATGTGGAAAGCTCCTGAATCCTACTGAACTTAAAGATCCGAAGTGCAAGGTCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGAAAAATGTGGAAAGCTCCTGAATCCTACTGAACTTAAAGATCCGAAGTGCAAGGTCTG 660
Query 661 TCAAAACACACCCCGAATTCGCGACACAGACCACCTGTTTATTGAGCTTCCGTTACTGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAAAACACACCCCGAATTCGCGACACAGACCACCTGTTTATTGAGCTTCCGTTACTGAA 720
Query 721 AGATAGGTTGGAAGCGTATATTAAAAAGACCTCTGTTACTGGATCTTGGAGTCAAAATGC 780
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 AGATAGGTTGGAAAAGTATATTAACGAGACCTCTGTTACTGGATCTTGGAGTCAAAATGC 780
Query 781 TATTCAAACGACAAATGCATGGCTTAGGGATGGGCTTAGACAGAGATGCATTACGAGGGA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 TATTCAAACGACAAATGCATGGCTTAGGGATGGGCTTAGACAGAGATGCATTACAAGGGA 840
Query 841 TCTTAAGTGGGGAGTGCCTGTCCCACATGAGAAATACAAGGACAAAGTCTTCTATGTTTG 900
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 841 TCTTAAGTGGGGAGTGCCTGTCCCACATGAGAAATATAAGGATAAAGTCTTCTATGTTTG 900
Query 901 GTTTGATGCTCCTATTGGATACGTCTCAATAACGTCTTGCTACACATCTGAATGGGAGAA 960
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GTTTGATGCTCCTATTGGATACGTCTCAATAACGTCATGCTACACATCTGAATGGGAGAA 960
Query 961 GTGGTGGAAGAATCCTGAGAATGTGGAGCTTTATCAGTTTATGGGGAAAGACAATGTGCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTGGTGGAAGAATCCTGAGAATGTGGAGCTTTATCAGTTTATGGGGAAAGACAATGTGCC 1020
Query 1021 ATTTCACACTGTGATGTTTCCCTCTACCCAGCTTGGAACTGAGGAAAATTGGACACTCAT 1080
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1021 ATTTCACACTGTGATGTTTCCCTCTACCCAGCTTGGAACTGGGGAAAATTGGACACTGAT 1080
Query 1081 GAAGACAATCAGTGTGACTGAATATTTAAACTATGAAGACGGAAAGTTCTCCAAGAGTAA 1140
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1081 GAAGACAATCAGTGTGACTGAATATTTAAACTACGAAGACGGAAAGTTCTCCAAGAGTAA 1140
Query 1141 AGGTGTTGGAGTGTTTGGTAATGATGTAAAAGATACAAATATACCTGTCGAAGTGTGGAG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1141 AGGTGTTGGAGTGTTTGGTAATGATGTAAAAGATACAAATATACCTGTCGAAGTATGGAG 1200
Query 1201 ATACTACTTGCTGACCAACAGGCCTGAGGTGTCTGACACATCGTTTTCATGGACTGATTT 1260
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 ATACTACTTGCTGACCAACAGGCCTGAGGTGTCTGACACATCATTTTCATGGACTGATTT 1260
Query 1261 GCAAGCAAAACTGAATGGCGAGTTGCTGAGCAACCTAGGCAACTTTGTTAATCGAGTTCT 1320
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1261 GCAAGCAAAACTGAATGGCGAGTTGCTGAACAACCTAGGCAACTTTGTTAATCGAGTTCT 1320
Query 1321 GAGTTTTATAGCAAAGCCTGATAATGCAGGTTACGGGTCTGTCATTCCTGATGCTCATGA 1380
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1321 GAGTTTTATAGCAAAGCCTAATAATGCAGGTTATGGGTCTGTCATTCCTGATGCTCATGA 1380
Query 1381 TGCTGAATCTCATTCTTTAACAAAATCACTGGCGGAAAAGGTTGAAAAGTTTGTGGCAGA 1440
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGCTGAATCTCATCCTTTAACAAAATCACTGGCGGAAAAGGTTGAAAAGTTTGTGGCAGA 1440
Query 1441 GTATGTTGAAGCCATGGAAAAGGTTAAGCTCAAGCAGGGACTGAAAACTGCTATGCTGAT 1500
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1441 GTATGTTGAAGCCATGGAAAAGGTTAAGCTCAAACAGGGGCTGAAAACTGCTATGCTGAT 1500
Query 1501 TTCAAGCGAAGGGAACTATTACTTGCAGGCAAGCCAATTTTGGAAACTTTACAAGGAAGA 1560
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1501 TTCAAGCGAAGGGAACTTTTACTTGCAGACAAGCCAATTTTGGAAACTTTACAAGGAAGA 1560
Query 1561 TAAACCTTTGTGTGCAGTTGTTATAAGAACTGCTGCTGGTTTAGTACACCTTCTTGCTCA 1620
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TAAACCTTTGTGTGCAATTGTTATAAGAACTGCTGCTGGTTTAGTACACCTTCTTGCTCA 1620
Query 1621 ATTGTTAGAACCTTTCATGCCATCCTTTTCTTGTGAGGTATTTAAACAGCTAAATTTGCC 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GTTGTTAGAACCTTTCATGCCATCCTTTTCTTGTGAGGTATTTAAACAGCTAAATTTGCC 1680
Query 1681 TCCACAATTTTCTCTCTCCGACGAGAGGGGAGAGGTATTACTAGCAAGTAGACCATGGGA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TCCACAATTTTCTCTCTCCGACGAGAGGGGAGAGGTATTACTAGCAAGTAGACCATGGGA 1740
Query 1741 TATTCTGCCTCCTAGCCACAGGATAGGCACCCCTCAACCTTTGTTCAAGGAGTTGGAAAA 1800
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1741 GATTCTGCCTCCTAGCCACAGGATAGGCACCACTCAACCTTTGTTCAAGGAGTTGGAAAA 1800
Query 1801 CGACGAAGTGGCACGGTACAGAGAAAAGTTTGCTGGAAGTCAGTCTGATAGACGTGCTAG 1860
||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1801 CGATGAAGTGACACAGTACAGAGAAAAGTTTGCTGGAAGTCAGGCTGATAGACGTGCTAG 1860
Query 1861 GGATGAAGCAGCAAATTTGGCGGATCAACTTAATAAAACAAAACTTTCAGATGCCAAGAA 1920
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1861 GGATGAAGCAGCAAATTTGACAGATCAGCTTAATAAAACAAAACTTTCAGATGCCAAGAA 1920
Query 1921 ACAAAAGGCATCATCA--AAAG-GCGGAGGAAAACCCAAACCTCAACCAGCTGCTGATCG 1977
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1921 ACAAAAGGCATCATCATCAAAAAGCGGAGGAAAACCCAAACCTCAACCAGCTGCTGATCG 1980
Query 1978 TGAAATAACTATGGCAAGACTTGATATCCGAGTTGGTAAAATTGTGAAGGCTGAGAAACA 2037
|||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct 1981 TGAAATTACTATGGCAAGACTTGATATTCGAGTAGGTAAAATTGTGAAGGCTGAGAGACA 2040
Query 2038 TCCCAAGGCAGATGCATTGTATGTAGAAGAAATTGATGTTGGGGGTGGTGAAATTCGCAC 2097
||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2041 TCCTAAGGCAGATACATTGTATGTAGAAGAAATTGATATTGGGGGTGGTGAAATTCGCAC 2100
Query 2098 TGTTGTCAGTGGACTGGTCAAATATATACCTCTTGAGGAAATGCAGAATCGTATGGTTTG 2157
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2101 TGTTGTTAGTGGACTGGTCAAATATATACCTCTAGAGGAGATGCAGAATCGTATGGTTTG 2160
Query 2158 TGTTCTTTGCAACTTGAAACCGGCGAAAATGAGGGATATTGTGTCACAAGCAATGGTTCT 2217
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2161 TGTTCTTTGTAACTTGAAACCGGCGAAAATGAGGGATATTGTGTCGCAAGCAATGGTTCT 2220
Query 2218 TGCAGCTTCCAGTAGTGATGGAAGCAAGGTGGAGTTAGTTGAGCCCCCTAAAACTGCTAA 2277
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2221 TGCAGCTTCCAGTAGTGATGGAAGCAAGGTGGAGTTAGTTGAGCCCCCTGAATCTGCTAT 2280
Query 2278 TATTGGAGAGCGAGTTACATTTCCCGGGTTTGAAGGCGAGCCAGACGATGTCTTAAACCC 2337
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2281 TATTGGAGAGCGAGTTACATTTCCCGGGTTTGAAGGCGAGCCAGATGATGTCTTAAACCC 2340
Query 2338 AAAGAAGAAAGTATGGGAGACGCTTTTGGTTGATCTAAACACAAAAGAGAATCTAGTTGC 2397
||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||||
Sbjct 2341 AAAGAAGAAAGTATGGGAGACACTTTTGGTGGATCTAAACACAAATGAGAATTTAGTTGC 2400
Query 2398 TTGCTACAAAGATGTGCCCTTCACTACATCTGCAGGTGTATGCAAAGTTTCATCCATCAG 2457
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 TTGCTACAAAGATGTTCCCTTCACTACATCTGCAGGTGTATGCAAAGTTTCATCCATCAG 2460
Query 2458 CAATGGCACGATCCGGTAAAAGCTTACTTGAGCCATAAG-CAAACTAATATTCTCCATTT 2516
||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 2461 CAATGGCACGATCCGGTAAAAGCTTCCTTGAGCCATAAGTCAT-CTAATATTCTCCATTT 2519
Query 2517 CTATCTTTCTCTGTAAGAG--AAACGAAA--T-T--CGGAGATTTTCATTTGAAAATTTG 2569
||||||||| ||||||| | |||||||| | | | ||||||||||||||||||||||
Sbjct 2520 CTATCTTTCACTGTAAGGGGGAAACGAAACGTATTTCTGAGATTTTCATTTGAAAATTTG 2579
Query 2570 ATTCTAATTACAAACATGTTCTTGTAAACTT-AAAGCTTGGTACAATTGTTG-TTATTGA 2627
|||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |||| ||
Sbjct 2580 ATTCTAATTACAAACAGGTTCTTGTAAACTTTAAAGCTTGTTACAATT-TTGGTTATCGA 2638
Query 2628 TTGATGTTGTGAGAAACATTCAGCTTTTTAAAATTGGGCCCAGACGCAAAGCAA 2681
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 2639 TTGATGTTGTGAGAAACATTCAGCTTCTTAAA-TTGGGCCCGGACGCAAAGCAA 2691
> Ahg312128 jgi|Araly1|312128|fgenesh1_pm.C_scaffold_1000908
Length=1752
Score = 2148 bits (1163), Expect = 0.0
Identities = 1571/1763 (89%), Gaps = 47/1763 (3%)
Strand=Plus/Plus
Query 107 CCCAAGTTACCGATCCCTGG-AAAGAGAAATATACTAATCACCAGTGCTTTGCCTTACGT 165
|||||||| |||||| |||| ||| ||||||||||||||||| |||||| ||||||||||
Sbjct 16 CCCAAGTTGCCGATCTCTGGCAAA-AGAAATATACTAATCACAAGTGCTCTGCCTTACGT 74
Query 166 CAACAACGTTCCTCATCTCGGAAACATCATCGGATGTGTTCTGAGCGCTGATGTGTATGC 225
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 75 CAACAACGTCCCTCATCTCGGAAACATCATTGGATGTGTTCTAAGCGCTGATGTGTATGC 134
Query 226 TAGATACTGTCGTCTCCGTGGCTATAATGCGATTTACATATGTGGAACCGATGAATATGG 285
|||||||||||||||||||||||||||||| || || |||||||| || |||||||||||
Sbjct 135 TAGATACTGTCGTCTCCGTGGCTATAATGCCATATATATATGTGGGACTGATGAATATGG 194
Query 286 GACTGCAACTGAGACCAAAGCT-TTGGAGGAGAATTGCACCCCCAAG-GAAATCTGTGAC 343
|||||| ||||||||||||||| || ||||||||| ||| ||||||| ||||||||||||
Sbjct 195 GACTGCTACTGAGACCAAAGCTCTT-GAGGAGAATCGCA-CCCCAAGAGAAATCTGTGAC 252
Query 344 AAGTACCATGCCATTCATAAAGAAGTTTATGACTGGTTTGGTATAAGTTTTGACAAGTTT 403
||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 253 AAGTACCATGCTATTCATAAAGAAGTTTATGACTGGTTTGATATTAGTTTTGACCAGTTT 312
Query 404 GGGCGAACTTCAACTCCAGAACAGACTGAGGTGTGCCAAGCAATTTTCAACAAGTTGTGG 463
|| ||||||||||||||| |||| || | |||||||||| |||||||||||| ||||||
Sbjct 313 GGCCGAACTTCAACTCCACAACATACACAAGTGTGCCAAGAAATTTTCAACAAATTGTGG 372
Query 464 GACAACAAGTGGCTTTCAGAGAACACCATGCAGCAGCTTTACTGCGATACATGCAAGAAG 523
|| ||||||| | ||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 373 GAAAACAAGTTGATTTCAGAGAACACTATACAGCAGCTTTACTGCGATACATGCAACAAG 432
Query 524 TTCTTAGCTGACCGGCTTGTTGAGGGTTCTTGTCCGTTCGAAGGATGTAATTATGATTCT 583
||||||||||||||||||||||||||||| ||| | | | |||||| ||||| |||
Sbjct 433 TTCTTAGCTGACCGGCTTGTTGAGGGTTCCTGT-C---C--ACTATGTAACTATGACTCT 486
Query 584 GCTCGTGGAGATCAGTGCGAAAAATGTGGAAAGCTCCTGAATCCTACTGAACTTAAAGAT 643
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
Sbjct 487 GCTCGTGGAGATCAGTGCGAAAGCTGTGGAAAGCTCCTGAATCCTACTGAACTCATTGCT 546
Query 644 CCGAAGTGCAAGGTCTGTCAAAACACACCCCG-AATTCGCGACACAGACCACCTGTTTAT 702
|||| ||||||||||||||||| |||| |||| ||||||||||||||||||||| |||||
Sbjct 547 CCGAGGTGCAAGGTCTGTCAAACCACA-CCCGAAATTCGCGACACAGACCACCTATTTAT 605
Query 703 TGAGCTTCCGTTA-CTGAAAGAT-AGGTTGGAAGCGTATATTAAAAAGACCTCTGTTAC- 759
||| |||||| | ||||| | | | |||||||||||||||||| ||| |||||| |
Sbjct 606 TGACCTTCCG-AAGCTGAAGGCTCA-GTTGGAAGCGTATATTAATGGGACATCTGTT-CG 662
Query 760 TGGATCTTGGAGTCA-AAATGCTATTCAAACGACAAATGCATGGCTTAGGGATGGGCTT- 817
||||||||||||| | ||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 663 TGGATCTTGGAGT-AGAAATGCTGTTCAAACGACAAATGCATGGATTAGGGAAGGGCTTC 721
Query 818 AGACAGAGATGCATTACGAGGGATCTT-AAGTGGGGAGTGCCTGTCCCACATGAGAAATA 876
| ||||||||||||||| |||||| || ||||||||||| || |||||||||||||||||
Sbjct 722 A-ACAGAGATGCATTACAAGGGAT-TTAAAGTGGGGAGTTCCAGTCCCACATGAGAAATA 779
Query 877 CAAGGACAAAGTCTTCTATGTTTGGTTTGATGCTCCTATTGGATACGTCTCAATAACGTC 936
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAAGGATAAAGTCTTCTATGTTTGGTTTGATGCTCCTATTGGATACGTCTCAATAACGTC 839
Query 937 TTGCTACACATCTGAATGGGAGAAGTGGTGGAAGAATCCTGAGAATG-TGGAGCTTTATC 995
||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||
Sbjct 840 ATGCTACACATCTGAATGGGAGCAGTGGTGGAAGAATCCTAAGAATGCT-GAGCTTTATC 898
Query 996 AGTTTATGGGGAAAGACAATGTGCCATTTCACACTGTGATGTTTCCCTCTACCCAGCTTG 1055
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 AGTTTATGGGGAAAGACAATGTGCCATTTCACACTGTGATGTTTCCTTCTACCCAGCTTG 958
Query 1056 GAACTGAGGAAAATTGGACACTCATGAAGACAATCAGTGTGACTGAATATTTAA-ACTAT 1114
|||||| ||||||||||||| | ||||||||| ||||||||||||||||||| | | ||
Sbjct 959 GAACTGGGGAAAATTGGACATTGATGAAGACAGTCAGTGTGACTGAATATTTGACA-TAC 1017
Query 1115 GAAGACGGAAAGTTCTCCAAGAGTAAAGGTGTTGGAGTGTTTGGTAATGATGTAAAAGAT 1174
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1018 CAAGGCGGAAAGTTCTCCAAGAGTAAAGGTGTTGGATTGTTTGGTAATGATGTAAAAGAT 1077
Query 1175 ACAAATATACCTGTCGAAGTGTGGAGATACTACTTGCTGACCAACAGGCCTGAGGTGTCT 1234
|||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 1078 ACAAATATCCCTGTAGAAGTATGGAGATACTACTTGCTGATCAACAGGCCTGAGGTATCT 1137
Query 1235 GACACATCGTTTTCATGG-ACTGATTTGCAAGCAAAACTGAATGGCGAGTTGCTGAGCAA 1293
|||||||||||| |||| | |||||||||||||||||||||| ||||||| ||| ||
Sbjct 1138 GACACATCGTTTGAATGGGAA-GATTTGCAAGCAAAACTGAATGACGAGTTGTTGAAAAA 1196
Query 1294 CCTAGGCAACTTTGTTAATCGAGTTCTGAGTTTTATAGCAAAGCCTGATAATGCAGGTTA 1353
||||||||| ||||||||||||||| ||||||||||||||||||| || ||| ||||||
Sbjct 1197 CCTAGGCAATTTTGTTAATCGAGTTGTGAGTTTTATAGCAAAGCCAGAAAATATAGGTTA 1256
Query 1354 CGGGTCTGTCATTCCTGATGCTCATGATGCTGAATCTCATTCTT-TAACAAAATCACTG- 1411
|||||| ||||||||||||||| || ||||||||||||| | |||| | |||||
Sbjct 1257 TGGGTCTATCATTCCTGATGCTCCTGGTGCTGAATCTCAT-CAACTAACGATGTCACTAA 1315
Query 1412 GCGGAAAAGGTTGA-AAAGTTTGTGGCAG-AGTATGTTGAAGCCATGGAAAAGGTTAAGC 1469
| | ||||||||| ||| || |||| || ||||||||||||||||||||||||||||||
Sbjct 1316 GTG-AAAAGGTTGGGAAA-TTGGTGG-AGGAGTATGTTGAAGCCATGGAAAAGGTTAAGC 1372
Query 1470 TCAAGCAGGGACTGAAAACTGCTATGCTGATTTCAAGCGAAGGGAACT-ATTACTTGCAG 1528
|||||||||| ||||||||||||||||| ||||| | ||||||||| || ||||||||
Sbjct 1373 TCAAGCAGGGGCTGAAAACTGCTATGCTCATTTCGGGTGAAGGGAACGCAT-ACTTGCAG 1431
Query 1529 GCAAGCCAATTTTGGAAACTTTACAAGGAAGATAAACCTTTGTGTGCAGTTGTTATAAGA 1588
| ||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 1432 ACCAGCGAATTTTGGAAACTTTACAAGGAAGATAAACCTTCCTGTGCAATTGTTGTAAGA 1491
Query 1589 ACTGCTGCTGGTTTAGTACACCTTCTTGCTCAATTGTTAGAACCTTTCATGCCATCCTTT 1648
| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 1492 AGTGCTGCTGGTTTAGTACACCTTCTTGCACGATTGTTAGAACCTTTCATGCCATCTTTT 1551
Query 1649 TCTTGTGAGGTATTTAAACAGCTAAATTTGCCTCCACAATTTTCTCTCTCCGACGAGAGG 1708
||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1552 TCTCATGAGGTATTCAAACAGCTAAATTTGCCTCCACATTTTTCACTCTCCGACGAAAGA 1611
Query 1709 GGAGAGGTATTACTAGCAAGTAGACCATGGGATATTCTGCCTCCTAGCCACAGGATAGGC 1768
||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 1612 GGAGAGGTATTACAAGCAAGTAGACCTTGGGAGATTCTGCCTCCAAGCCACAGGATAGGC 1671
Query 1769 ACCCCTCAACCTTTGTTCAAGGAGTTGGAAA-ACGACGAAGTGGCA-CGGTACAGAGAAA 1826
|| |||||||| ||||||||||| || ||| | || |||||| || | ||||| || ||
Sbjct 1672 ACTCCTCAACCATTGTTCAAGGAACTG-AAAGATGAAGAAGTG-CAACAGTACAAAGCAA 1729
Query 1827 AGTTTGCTGGAAGTCA-GTCTGA 1848
||| ||||||||||| ||||||
Sbjct 1730 GGTTCGCTGGAAGTCAAGTCTGA 1752
> Ahg315394 jgi|Araly1|315394|fgenesh1_pm.C_scaffold_2000427
Length=2142
Score = 632 bits (342), Expect = 4e-180
Identities = 452/506 (89%), Gaps = 4/506 (1%)
Strand=Plus/Plus
Query 1973 GATCGTGAAATAACTATGGCAAGACTTGATATCCGAGTTGGTAAAATTGTGAAGGCTGAG 2032
||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1639 GATCGCGAAATTACCATGGCAAGACTTGATATTCGAGTAGGTAAAATTGTGAAGGCTGAG 1698
Query 2033 AAACATCCCAAGGCAGATGCATTGTATGTAGAAGAAATTGATGTTGGGGGTGGTGAAATT 2092
|||||||| ||||||||| |||||||||||||||||||||||||||| | | | || ||
Sbjct 1699 AAACATCCTAAGGCAGATTCATTGTATGTAGAAGAAATTGATGTTGGAGAAGATCAACTT 1758
Query 2093 CGCACTGTTGTCAGTGGACTGGTCAAATATATACCTCTTGAGGAAATGCAGAATCGTATG 2152
||||||||| |||||||| || || ||||||||||||||||| |||||||| ||| ||
Sbjct 1759 TACACTGTTGTTAGTGGACTAGTTAAGTATATACCTCTTGAGGAGATGCAGAACCGTTTG 1818
Query 2153 GTTTGTGTTCTTTGCAACTTGAAACCGGCGAAAATGAGGGATATTGTGTCACAAGCAATG 2212
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 1819 GTTTGTGTTCTTTGCAACTTGAAGCCGGCGAAAATGAGGGAGATTGTGTCACAAGGAATG 1878
Query 2213 GTTCTTGC-AGCTTCCAGTAGTGATGGAAGCAAGGTGGAGTTAGTTGAGCCCCCTAAAAC 2271
|||||||| | |||| ||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 1879 GTTCTTGCCA-CTTCTAGTAGTGATGGTAGCAAGGTGGAGTTAGTTGAGCCCCCTGAATC 1937
Query 2272 TGCTAATATTGGAGAGCGAGTTAC-ATTTCCCGGGTTTGAAGGCGAGCCAGACGATGTCT 2330
| |||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 1938 TTCTAAGATTGGAGAGCGAGTTAAGATT-CCCGGGTTTGAAGGCGAGCCAGACAATGTCT 1996
Query 2331 TAAACCCAAAGAAGAAAGTATGGGAGACGCTTTTGGTTGATCTAAACACAAAAGAGAATC 2390
||||||| |||| |||| ||||||||| ||| | || |||||||||||||| ||||||
Sbjct 1997 TAAACCCGAAGACGAAAATATGGGAGAAACTTGTAGTGGATCTAAACACAAATGAGAATT 2056
Query 2391 TAGTTGCTTGCTACAAAGATGTGCCCTTCACTACATCTGCAGGTGTATGCAAAGTTTCAT 2450
||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||
Sbjct 2057 TAGTTGCTTGCTACAAAAATTTACCCTTCACTACATCTGCAGGTGAATGCAAAGTTTCAT 2116
Query 2451 CCATCAGCAATGGCACGATCCGGTAA 2476
|||| ||||||||||| ||||| |||
Sbjct 2117 CCATTAGCAATGGCACAATCCGATAA 2142
Score = 599 bits (324), Expect = 4e-170
Identities = 591/714 (83%), Gaps = 42/714 (6%)
Strand=Plus/Plus
Query 659 TGTCAAAA-CACACCCCGAATTCGCGACACAGACCACCTGTTTATTGAGCTTCCGTTACT 717
||| |||| ||||||| | |||||||||| ||||| ||||| |||||||||| || ||
Sbjct 457 TGT-AAAACCACACCCGGGTTTCGCGACACGGACCATTTGTTTCTTGAGCTTCCCTTGCT 515
Query 718 GAAAGATAGGTTGGAAGCGTATATTAAAAAGACCTCT-GTTACTGGATCTTGGAGTCAAA 776
|||| ||| |||| || |||||||||| |||| ||| | || |||||||||||||| |
Sbjct 516 GAAATATAAGTTGAAAAAGTATATTAAAGAGACATCTAG-TAGTGGATCTTGGAGTCGGA 574
Query 777 ATGCTATTCAAACGAC--A--AAT-GC-------A-TGGCT-----TA--G----GGATG 812
|||||||||||||||| | || || | || || || | ||| |
Sbjct 575 ATGCTATTCAAACGACGGATGCATCGCTTAAGGAAGTGCCTAACGATAGCGAAAAGGACG 634
Query 813 GGCTT-AGACAGAGATGCATTACGAGGGATCTT-AAGTGGGGAGTGCCTGTCCCACATGA 870
||||| ||| |||||||||| || |||||| || ||||||||||| || || ||||||||
Sbjct 635 GGCTTAAGA-AGAGATGCATCACAAGGGAT-TTAAAGTGGGGAGTTCCAGTTCCACATGA 692
Query 871 GAAATACAAGGACAAAGTCTTCTATGTTTGGTTTGATGCTCCTATTGGATACGTCTCAAT 930
|||||| ||||| ||||||||||| ||||||||||||||||||||||| || || || ||
Sbjct 693 GAAATATAAGGAAAAAGTCTTCTACGTTTGGTTTGATGCTCCTATTGGTTATGTTTCGAT 752
Query 931 AACGTCTTGCTACACATCTGAATGGGAGAAGTGGTGGAAGAATCCTGAGAATGTGGAGCT 990
||| || || |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 753 AACTTCATGTTACACATCGGAATGGGAGAAGTGGTGGAAGAATCCTGAGAATGTTGAGCT 812
Query 991 TTATCAGTTTATGGGGAAAGACAATGTGCCATTTCACACTGTGATGTTTCCCTCTACCCA 1050
||||||||||||||||||||| |||||| ||||||||||| ||||||| | ||| ||
Sbjct 813 TTATCAGTTTATGGGGAAAGATAATGTGTTTTTTCACACTGTCTTGTTTCCTTGTACGCA 872
Query 1051 GCTTGGAACTGAG-GAAAATTGGAC-ACTCATGAAGACAATCAGTGTGACTGAATATTTA 1108
|||||||||| | ||| ||||||| | | ||||||||| | ||||||||||| ||||||
Sbjct 873 TCTTGGAACTG-GTGAAGATTGGACTA-TGATGAAGACAGTTAGTGTGACTGATTATTTA 930
Query 1109 AACTATGAAGACGGAAAGTTCTCCAAGAGTAAAGGTGTTGGAGTGTTTGGTAATGATGTA 1168
|| || |||| ||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 931 AATTACGAAGGCGGAAAGTTTTCGGAGAGTAAAGGTGTTGGAGTGTTTGGTAATGATGTG 990
Query 1169 AAAGATACAAATATACCTGTCGAAGTGTGGAGATACTACTTGCTGACCAACAGGCCTGAG 1228
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 991 AAAGATACAAATATCCCTGTCGAAGTATGGAGATACTACTTGCTGACCAACAGGCCAGAG 1050
Query 1229 GTGTCTGACACATCGTTTTCATGG-ACTGATTTGCAAGCA-AAACTGAATGGCGAGTTGC 1286
|||||| ||| | ||| |||| | |||||| ||| | ||||| ||| ||||||||
Sbjct 1051 AAGTCTGATACAACATTTAAATGGGA-TGATTTCCAAA-AGAAACTTAATCACGAGTTGC 1108
Query 1287 TGAGC-AACCTAGGCAACTTTGTTAATCGAGTTCTGAGTTTTATAGCAAAGCCT 1339
| ||| ||||| || ||||||||| ||| |||| ||||||||||||||||||||
Sbjct 1109 T-AGCGAACCTTGGAAACTTTGTTTATCTAGTTTTGAGTTTTATAGCAAAGCCT 1161
Score = 438 bits (237), Expect = 8e-122
Identities = 394/468 (84%), Gaps = 18/468 (4%)
Strand=Plus/Plus
Query 83 ATGGAAGACGACGGCAAGAGCAG-CCCCAAGTTACCGATCCCT-GGAAAGAGAAATATAC 140
||||||||||| |||||| | | ||||||||| || || ||| || |||||||||||||
Sbjct 1 ATGGAAGACGAAAGCAAGATC-GTCCCCAAGTTGCCAAT-CCTAGGCAAGAGAAATATAC 58
Query 141 TAATCACCAGTGCTTTGCCTTACGTCAACAACGTTCCTCATCTCGGAAACATCATCGGAT 200
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || |
Sbjct 59 TAATCACCAGTGCTTTGCCTTACGTCAACAACGTACCACATCTAGGAAACATCATTGGTT 118
Query 201 GTGTTCTGAGCGCTGATGTGTATGCTAGATACTGTCGTCTCCGTGGCTATAATGCGATTT 260
||||||| || |||||||| || |||||||| |||||||| ||||||||||| | || |
Sbjct 119 GTGTTCTAAGTGCTGATGTCTACGCTAGATATTGTCGTCTACGTGGCTATAACACAATCT 178
Query 261 ACATATGTGGAACCGATGAATATGGGACTGCAACTGAGACCAAAGCTTTGGAGGAGAATT 320
||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||
Sbjct 179 ACATATGTGGAACCGATGAATATGGAACTGCAACAGAGACAAAAGCTTTAGAGGAAAATT 238
Query 321 GCACCCCCAAGGAAATCTGTGACAAGTACCATGCCATTCATAAAGAAGTTTATGACTGGT 380
| || || || || || ||||||||||||||||| |||||| ||| ||||||| ||||
Sbjct 239 GTACACCGAAAGAGATTTGTGACAAGTACCATGCAATTCATCAAG---TTTATGATTGGT 295
Query 381 TTGGTATAAGTTTTGACAAGTTTGGGCGAACTTCAACTCCAGA-ACAGACTGAGGTGTGC 439
||| |||||||||||| |||||||| |||||||||||||| || ||| | || | ||
Sbjct 296 TTGATATAAGTTTTGATAAGTTTGGTCGAACTTCAACTCCTGAGACAAA---AGTT-TGT 351
Query 440 CAAGCA-ATTTTCAACAAGTTGTGGGACAAC-AAGTGGCTTTCAGA-GAACACCATGCAG 496
|||| | |||||||||||||||||||| ||| || ||| |||| || || || ||| |
Sbjct 352 CAAG-AGATTTTCAACAAGTTGTGGGAAAACGAA-TGGATTTCTGAAGAT-ACTATGAAA 408
Query 497 CAGCTTTACTGCGATACATGCAAGAAGTTCTTAGCTGACCGGCTTGTT 544
|| | ||| || ||||||||||||||||| |||||||| || ||||||
Sbjct 409 CAACCTTATTGTGATACATGCAAGAAGTTTTTAGCTGATCGTCTTGTT 456
Score = 390 bits (211), Expect = 2e-107
Identities = 389/472 (82%), Gaps = 24/472 (5%)
Strand=Plus/Plus
Query 1405 ATCACTGGCGGAA-AAGGTTGAAAAGTTTGTGGCA-GAGTATGTTGAAGCCATGGAAAAG 1462
|||||| || ||| | | | ||||| || |||| | || |||||| ||| ||||||||
Sbjct 1182 ATCACTTGCTGAATATGCTGGAAAA-TTGGTGG-AGGACTATGTTAAAGTTATGGAAAAA 1239
Query 1463 GTTAAGCTCAAG-CAGGGACTGAAAACTGCTATGCTGATT-TC-AAGCGAAGGGAACTA- 1518
|||||||||||| |||| || | || | ||||| || || || ||||||||| |
Sbjct 1240 GTTAAGCTCAAGAAAGGG-CTTCATACCACAATGCT-CTTATCGAA-TGAAGGGAAC-AC 1295
Query 1519 TTACTTGCAGGCA-AGCCAA-TTTTGGAAACTTTACAAGGAAGATAAACC-TTTGTGTGC 1575
|||||||||| | | |||| |||||| |||| ||||| |||||||||| | | |||||
Sbjct 1296 ATACTTGCAGG-ATA-CCAATTTTTGGGAACTCTACAAAAAAGATAAACCGTCT-TGTGC 1352
Query 1576 AGTTGTTATAAGAACTGCTGCTGGTTTAGTACACCTTCTTGCTCAATTGTTAGAACCTTT 1635
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1353 AGTTGTTATAAGAACTGCTGCTGGTTTAGTACACCTTCTTGCACGATTGTTAGAACCTTT 1412
Query 1636 CATGCCATCCTTTTCTTGTGAGGTATTTAAACAGCTAAATTTGCCTCCACAATTTTCTCT 1695
||||||||| |||||| ||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 1413 CATGCCATCTTTTTCTCGTGAGGTATTTAAACAGCTGAATTTGCCACCACATTTTTCACT 1472
Query 1696 CTCCGACGAGAGGGGAGAGGTATTACTAGCAAGTAGACCATGGGATATTCTGCCT-CCTA 1754
|||||| |||| ||||||||||||| ||||||||| | ||||| ||||| ||| || |
Sbjct 1473 CTCCGAAGAGAAAGGAGAGGTATTACAAGCAAGTAGTCTTTGGGAGATTCTTCCTTCCAA 1532
Query 1755 GCCACAGGATAGGCACCCCTCAACCTTTGTTCAAGGAGTTGGAAAACGACGA-AGTGGCA 1813
||||||||| || || |||||||| ||||||||| | ||||| | || || | || |
Sbjct 1533 -CCACAGGATTGGAACACCTCAACCATTGTTCAAGAAAATGGAAGAGGAAGAGA-TGAAA 1590
Query 1814 CGGTACAGAGAAAAGTTTGCTGGAAGTCA-GTCTGATAGACGTGCTAGGGAT 1864
| |||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 1591 CATTACAGAGAAAAGTTTGCTGGAAGTCAAG-CTGATAGACTTGCTAGGGAT 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101358141945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5