BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13790.1

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493535 jgi|Araly1|493535|fgenesh2_kg.7__2968__AT4G13790.1         684    0.0  


> Ahg493535 jgi|Araly1|493535|fgenesh2_kg.7__2968__AT4G13790.1
Length=502

 Score =  684 bits (370),  Expect = 0.0
 Identities = 437/468 (93%), Gaps = 10/468 (2%)
 Strand=Plus/Plus

Query  52   AACTTTAGCCATTAATTCAAAG--ttt-ttttttCTTTCTAATACTCGAAATGGCTTTCT  108
            |||| |||| ||||||||||||  ||| |||||| |||||||||||||||||||| ||||
Sbjct  35   AACTGTAGCGATTAATTCAAAGCTTTTGTTTTTTGTTTCTAATACTCGAAATGGCATTCT  94

Query  109  TAAGGAGTTTTTTCGCTACCAAGCATATCATTCGCCGGTCTTTTACTACGGAATCATTAT  168
            ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  95   TAAGGAGTTTTTTTGCTACCAAGCAAATCATTCGCCGGTCTTTTACTACGGAATCATCAT  154

Query  169  CAACGCCTAAAGGGTTCTTTGCTGTGTATGTTGGAGAAAATCTGAAGAAGAAGAGATATC  228
            ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||
Sbjct  155  CAACGCCCAAAGGGTTCTTCGCTGTGTATGTTGGAGAAAACCTGAAGAAGAAGAGGTTTC  214

Query  229  TTGTTCCGGTTTGTTACTTGAACAAGCCATCTTTCCAAGCTTTGCTTAGGAAAGCAGAAG  288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  215  TTGTTCCGGTTTGTTACTTGAACAAGCCATCTTTCCAAGCTTTGCTTAGGAAAGCAGAAG  274

Query  289  AAGAGTTCGGTTTTAATCATCCAACGGGCGGTTTGAGTTTACCATGCGACGAAGCTTTCT  348
            |||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct  275  AAGAGTTCGGTTTTGATCATCCAACTGGTGGTTTGAGTTTACCATGCGACGAAGCTTTCT  334

Query  349  TCTTCACTGTCACTTCTCAGATTCGTTAATCCCATACAATAATTAAAG-TCTTTTTT-AC  406
            |||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||| ||
Sbjct  335  TCTTCATTGTCACTTCTCAGATTTGTTAAGCCCATACAATAATTAAAGATCTTTTTTTAC  394

Query  407  ATTCTCTTATTTATAGAAGAAAATACACATTGTACATACTATACTTTTATATACATACTG  466
            |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct  395  ATTCTCTTATTTATAGAAGAAAATACACATTGTAAATATTACACTTTTATATACATACTG  454

Query  467  ATGAGAAGAATAATTCAACGAACATC-T-T-TT--GCTTTCGTTTTCT  509
            |||||||||||||||||||||||||| | | ||  |||||||||||||
Sbjct  455  ATGAGAAGAATAATTCAACGAACATCATATCTTTTGCTTTCGTTTTCT  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18505460665


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5