BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13830.2
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493532 jgi|Araly1|493532|fgenesh2_kg.7__2965__AT4G13830.2 1140 0.0
> Ahg493532 jgi|Araly1|493532|fgenesh2_kg.7__2965__AT4G13830.2
Length=811
Score = 1140 bits (617), Expect = 0.0
Identities = 725/777 (93%), Gaps = 7/777 (1%)
Strand=Plus/Plus
Query 19 TACACATTACCAATTCTCATATTaaaatccacaaaactcaaatccccaaaataaacaaac 78
||||||||||| |||| |||||||||||||||||| |||||| |||||||| | |||||
Sbjct 10 TACACATTACC-ATTCCCATATTAAAATCCACAAATCTCAAAACCCCAAAA-ACCCAAAC 67
Query 79 cctaaaattc-aaaacaatgaaatgttacaaaaGCTCATCAATTCTCTCAACCAATCACC 137
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 CCTAAAA-TCGAAAACAATGAAATGTTACAAAAGCTCATCAATTCTCTCAACCAATCACC 126
Query 138 ACCCATTCTTCTACAAACAACAACCAATCTCCTCTCTTCAACCAACTTCAATCCCAACAA 197
| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 127 ATCCATTCTTCTACAAACAACAACCAATCTCCTCTCTTCAACCATCTTCCTTCCCATCAA 186
Query 198 CTATCTCTTACCCAACCCGAACCCGATTCTCCTCCACCCGGATCCAATCTCGATTAACCC 257
|| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 187 CTCTCTCTTACCCGACCCGAACCCGCTTCTCCTCCACCCGGATCCAATCTCGACTAACCC 246
Query 258 ACGACGATCCAGTAAAACAATCGGAAGACTTATCCTTCTACGATCTTCTCGGCGTCACCG 317
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACGACGATCCCGTAAAACAATCGGAAGACTTATCCTTCTACGATCTTCTCGGCGTCACCG 306
Query 318 AATCAGTCACACTCCCAGAAATCAAACAAGCTTATAAACAACTAGCTCGAAAATATCACC 377
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 307 AATCAGTCACACTCCCAGAAATCAAACAAGCTTATAAACAACTTGCTCGTAAATATCACC 366
Query 378 CCGATGTTTCTCCTCCGGATCGTGTCGAAGAATACACAGATCGGTTTATTCGTGTTCAAG 437
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 367 CCGATGTTTCTCCTCCGGATCGTGTCGAAGAATACACAGATCGGTTTATTAGAGTTCAAG 426
Query 438 AAGCTTACGAAACTCTCTCCGATCCTCGCCGGAGAGTTTTATATGACCGTGATTTGTCTA 497
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 427 AAGCTTACGAAACTCTCTCCGATCCTCGTCGGAGAGTTTTATATGATCGTGATTTGTCTA 486
Query 498 TGGGGTTTTCTTTTTCTTTCTCCGGTCGACGCCAGAACCGTTACGATCAGGAAGTGGTGG 557
|||||||||| ||||| ||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 487 TGGGGTTTTCGTTTTCCTTCTCCGGTAAACGCCGGAACCGTTACGATGAGGAAGTGGTGG 546
Query 558 AAGAGAAGAGTGAGTGGAAAGCAAAATGGCAAACTCAGCTCTCAGGGTTAAGGAGAAGAA 617
||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 547 AAGAGAAGAGTGAGTGGAAGGCAAAATGGCAAACGCAGCTCTCAGGGCTAAGGAGAAGAA 606
Query 618 GCAATCAGAAAGATAATAACACGATGTCTTGGGCTGCAAGAATGCGTCGTCAACAACAAG 677
||||||||||||| |||||| | |||||||||||||| |||||||| |||||||||||||
Sbjct 607 GCAATCAGAAAGACAATAACTCAATGTCTTGGGCTGCTAGAATGCGCCGTCAACAACAAG 666
Query 678 AATCTTCTTAACATACGACATCGA-GTCTTTAGCCTTGTTATGTATAGTCTTTTAATTGT 736
| || |||||||| || ||||| | ||||||||||| ||| ||||||||||||||||||
Sbjct 667 ATTCCTCTTAACACACAACATC-ATGTCTTTAGCCTCCTTACGTATAGTCTTTTAATTGT 725
Query 737 TTGTGTGTAATATAGAAAGCATAGCATCAATACCCCAGCAACTTTGTATATATGTAA 793
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 726 TTGTGTGTAATATAGAAAGCATAGCATCAATAACA-AGAAACTTTGTATATATGTAA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5