BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13850.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493528 jgi|Araly1|493528|fgenesh2_kg.7__2961__AT4G13850.3 857 0.0
> Ahg493528 jgi|Araly1|493528|fgenesh2_kg.7__2961__AT4G13850.3
Length=652
Score = 857 bits (464), Expect = 0.0
Identities = 603/668 (90%), Gaps = 18/668 (3%)
Strand=Plus/Plus
Query 1 TTCATTCTACATTTCCTCTGCCTCTTTCTCAGATCACAAAACCCTAATTTCGAATCTTTA 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2 TTCATTCTTCATTTCCTCTGCCTCTTTCTCAGATCACAAAACCCTAATTTCGAAGCTTTA 61
Query 61 TTCTTCAGAATGGCTTTCTGTAACAAACTCGGTGGTCTATTGAGACAGAACATTTCTTCT 120
||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||
Sbjct 62 TTCATCAGAATGGCTTTCTGCAACAAACTCGGTGGTCTGTTGAGACAGAACATTACTCCT 121
Query 121 AACGGAAATGTTCCGGTTACGTCTATGCTCGGATCTCTCCGGTTGATGTCTACCAAGCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AACGGAAATGTTCCGGTTACGTCTATGCTCGGATCTCTCCGGTTGATGTCTACCAAGCTT 181
Query 181 TTCATCGGAGGTCTCTCATGGGGAACCGATGACGCA-TCCTTAAGGGATGCTTTTGCTCA 239
||| |||||||||| ||||||||||| |||||| || ||||| |||||||||||||||||
Sbjct 182 TTCGTCGGAGGTCTTTCATGGGGAACTGATGAC-CAGTCCTTGAGGGATGCTTTTGCTCA 240
Query 240 CTTCGGTGACGTTGTTGATGCTAAAGTTATCGTTGATAGAGAGACAGGAAGATCAAGGGG 299
||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 241 CTTCGGTGAAGTTGTTGATGCTAAAGTCATCGTAGATAGAGAGACGGGAAGATCGAGGGG 300
Query 300 GTTTGGATTTGTCAACTTCAATGATGAGGGTGCTGCAACTGCTGCCATATCAGAGATGGA 359
||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||
Sbjct 301 ATTTGGATTTGTCAACTTCAATGACGAGAGTGCTGCATCTGCTGCCATTTCAGAGATGGA 360
Query 360 CGGAAAGGAACTGAATGGTCGTCACATCCGAGTGAATCCTGCTAATGATAGACCAAGTGC 419
||||||||| |||||||||||| |||| ||||||||| ||||||||| |||||||||||
Sbjct 361 CGGAAAGGATCTGAATGGTCGTAACATTCGAGTGAATGTTGCTAATGAAAGACCAAGTGC 420
Query 420 TCCACGGGCTTAtggaggtggtggtggatacagtggtggaggtggaggctacggaggagg 479
||| |||||||| |||||||||||||| ||||||||||| | | | | | |||||
Sbjct 421 TCCTCGGGCTTACGGAGGTGGTGGTGGTTACAGTGGTGGC--T--A--C-A-GT-GGAGG 471
Query 480 tggtggtgggtacggaggaggaggtggtggctatggaggaggtggtgatggtggtggtgg 539
||||||||| ||| || || ||||| ||||| ||||||||||||| | |||||||||
Sbjct 472 TGGTGGTGGCTAC--AGT-GGTGGTGGCGGCTACGGAGGAGGTGGTGGCGATGGTGGTGG 528
Query 540 tTTCTAAACAGAGGAGGTGCTTGTGAAGAAGAAGAGTTAATGGTTCTGTTTAGTTGGTTT 599
|| |||||| ||| || ||||||||||||||| | || |||||||||||||||||||||
Sbjct 529 TTACTAAACGGAG-AGTTGCTTGTGAAGAAGA-G--TTGATGGTTCTGTTTAGTTGGTTT 584
Query 600 CTTCTATTGAATCTTATGTTAGTACAAAACCTGAATGGGATTTGCTGAAAACTCTTTACT 659
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 585 CTTCAATTGAATCTTATGTTAGTATAAAACCTGAATGGGATTTGCTGAAAACTCGTTACT 644
Query 660 Cttttttt 667
||||||||
Sbjct 645 CTTTTTTT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5