BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13870.2
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493524 jgi|Araly1|493524|fgenesh2_kg.7__2957__AT4G13870.2 1356 0.0
> Ahg493524 jgi|Araly1|493524|fgenesh2_kg.7__2957__AT4G13870.2
Length=1035
Score = 1356 bits (734), Expect = 0.0
Identities = 839/888 (94%), Gaps = 14/888 (2%)
Strand=Plus/Plus
Query 33 TAAAAGAAATGTCATCGTCAAATTGGAT---CGACGACGCTTTTACAGAGGAAGAGCTTC 89
||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TAAAAAAAATGTCTTCGTCAAATTGGATCGACGACGACGCTTTTACAGAGGAAGAGCTTC 60
Query 90 TCGCTATCGACGCCATCGAAGCTTCCTACAATTTCTCCCGttcttcttcttcttcttcCT 149
||||||| ||||||||||||||||||||||||||||||| | ||||||||| | | |
Sbjct 61 TCGCTATTGACGCCATCGAAGCTTCCTACAATTTCTCCC--T-TTCTTCTTC--C-T-C- 112
Query 150 CTGCTGCTCCGACCGTACAAGCTACAACCTCCGTCCATGGCCACGAGGAGGATCCAAATC 209
| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 113 C-GCTTCCCCGACCGTACAAGCTACAACCTCCGGCCATGACCACGAGGAGGATCCAAATC 171
Query 210 AAATCCCCAATAATATCCGTCGCCAATTGCCTCGTTCCATCACTTCTTCTACATCTTATA 269
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 172 AAATCCCCAATAATATCCGTCGCCAATTGCCTCGTTCCATCACTTCTCCTACATCTTATA 231
Query 270 AACGATTTCCTCTCTCCCGTTGCCG-AGCTAGGAATTTTCCAGCAATGAGGTTTGGTGGT 328
|||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||||
Sbjct 232 AACGATTTCCTCTCTCTCGTTGCCGTA-CTAGGAATTTTCCAGCAATGAGATTTGGTGGT 290
Query 329 AGGATTTTGTATAGCAAGACTGCTACTGAGGTTGATAAGCGAGCAATGCAGCTTATTAAA 388
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 291 AGGATTTTGTATAGCAAGACTGCTAGTGAGGTTGATAAGCGAGCAATGCAGCTTCTTAAA 350
Query 389 GTTCTTGATACCAAGAGAGATGAATCTGGAATAGCTTTTGTTGGCTTGGATATTGAGTGG 448
|||||||||||||||||| |||||||||||| |||| ||||||| || ||||||||||||
Sbjct 351 GTTCTTGATACCAAGAGAAATGAATCTGGAAGAGCTATTGTTGGTTTTGATATTGAGTGG 410
Query 449 AGACCAAGTTTTAGAAAAGGTGTTCTCCCGGGGAAGGTTGCGACTGTCCAGATATGTGTA 508
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 411 AGACCAAGTTTTAGAAAAGGTGTTCTCCCGGGGAAGGTTGCAACTGTCCAGATATGTGTA 470
Query 509 GATAGTAATTATTGTGATGTTATGCATATTTTTCATTCTGGTATCCCTCAAAGTCTCCAA 568
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 471 GATAATAATTATTGTGATGTTATGCATATTGTTCATTCTGGTATCCCGCAAAGACTCCAA 530
Query 569 CATCTTATTGAAGATTCAACACTTGTAAAGGTAGGTATTGGAATTGATGGTGACTCTGTG 628
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CATCTGATTGAGGATTCAACACTTGTAAAGGTAGGTATTGGAATTGATGGTGACTCTGTG 590
Query 629 AAGCTTTTCCATGACTATGGAGTTAGTATCAAAGATGTTGAGGATCTTTCAGATTTAGCC 688
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 591 AAGCTTTTCCATGACTATGGAGTTTCCATCAAAGATGTTGAGGATCTTTCAGATTTAGCC 650
Query 689 AACCAAAAAATTGGTGGAGATAAAAAATGGGGCCTTGCCTCACTAACTGAGACACTTGTT 748
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AACCGAAAAATTGGTGGAGATAAAAAATGGGGCCTTGCCTCACTAACTGAGACACTTGTT 710
Query 749 TGCAAAGAGCTCCTGAAGCCAAACAGAATCAGGCTTGGGAACTGGGAGTTTTATCCTCTG 808
||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 711 TGCAAAGAGCTCCTGAAGCCAAATAGAATCAGGCTTGGGAATTGGGAGGTTTATCCTCTA 770
Query 809 TCAAAGCAGCAGTTACAATACGCAGCAACGGATGCTTATGCTTCATGGCATCTTTACAAG 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 771 TCAAAGCAGCAGTTACAATACGCAGCAACGGATGCTTATGCTTCATGGCATCTTTACCAG 830
Query 869 GTTCTTAAGGACCTTCCTGATGCTGTCAGTGGCTCATAACGTGAAGGA 916
|||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 831 GTTCTTAAGGACCTTCCTGATGCTGTCAATGGCTCATAACGTGGAGGA 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5