BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13890.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493523 jgi|Araly1|493523|fgenesh2_kg.7__2956__AT4G13890.1 1711 0.0
Ahg947030 jgi|Araly1|947030|scaffold_703259.1 1448 0.0
> Ahg493523 jgi|Araly1|493523|fgenesh2_kg.7__2956__AT4G13890.1
Length=1175
Score = 1711 bits (926), Expect = 0.0
Identities = 1094/1177 (93%), Gaps = 4/1177 (0%)
Strand=Plus/Plus
Query 2 AGAGATGGAACCAGTCTATTCTTGGGGAAACACGCATCTTGACTTCGTCGATCCGGAGAT 61
|||||||||| |||||| ||||||||||||||||| ||||| || ||||||||| |||||
Sbjct 1 AGAGATGGAATCAGTCTCTTCTTGGGGAAACACGCCTCTTGTCTCCGTCGATCCCGAGAT 60
Query 62 CTACGACCTAATCGAGAAGGAGAAACATCGTCAATGTCGAGGAATCGAACTCATAGCAGC 121
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 61 CCACGACCTAATCGAGAAGGAGAAACATCGGCAATGTCGAGGAATCGAACTCATAGCCGC 120
Query 122 CGAGAATTTCACTTCCGTGGCCGTCATGGAAGCTCTCGGAAGTTG-CTTAACCAACAAAT 180
|||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||||
Sbjct 121 CGAGAATTTCACTTCCTTGGCTGTCATGGAAGCTCTTGGAAG-TGCCTTAACCAACAAAT 179
Query 181 ACTCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 ACTCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATCG 239
Query 241 AGAGTCTCTGCCGCTCACGCTCTCTCGAAGCCTTCCATTGCAATCCAGAGAAATGGGGCG 300
|||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||
Sbjct 240 AGAGTCTCTGCCGCTCACGCGCTCTCGAGGCTTTCCATTGTGATCCAGAGAAATGGGGCG 299
Query 301 TTAACGTTCAGCCTTACTCTGGTTCCCCTGCGAATTTCGCAGCCTACACCGCCTTGCTCC 360
|||| |||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||
Sbjct 300 TTAATGTTCAGCCTTACTCTGGTTCTCCTGCAAACTTCGCCGCCTACACGGCCTTGCTCC 359
Query 361 AGCCTCATGATCGTATCATGGGGCTTGATTTGCCATCAGGTGGTCATATAACGCATGGTT 420
|||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||
Sbjct 360 AGCCTCATGATCGTATCATGAGGCTTGATCTGCCTTCAGGTGGTCATCTAACGCATGGTT 419
Query 421 ACTATAGCTCTGGTGGGAAGAACATCTCCGCGACCTCGATCTACTTTGAAAACCTTCCCT 480
|||||| ||||||||||||||| || |||||||||||||||||||| |||||||||| |
Sbjct 420 ACTATACCTCTGGTGGGAAGAATATATCCGCGACCTCGATCTACTTCGAAAACCTTCTGT 479
Query 481 ACAAGGTGGATTCCAAGACTGGTTACATTGATTACGACAAACTTGAGGAGAAAGCTATGG 540
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 480 ACAAGGTGGATTCCACCACTGGTTACATTGATTACGACAAGCTTGAGGAGAAAGCAATGG 539
Query 541 ATTTTAGGCCTAAGTTAATTATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATTACG 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTTTAGGCCTAAGTTAATCATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATTACG 599
Query 601 CGAGATTCAGGGCTGTCGCCGACAAGGTTGGAGCTTTTTTGCTCTGTGATATGGCTCATA 660
|||| |||| | |||||| || |||||||||||| ||||||| |||||||||||||| |
Sbjct 600 CGAGGTTCAAAGTTGTCGCGGATAAGGTTGGAGCTCTTTTGCTTTGTGATATGGCTCACA 659
Query 661 ACAGTGCCCTCGTTGCTGCTCAGGAAGCCGCAGACCCGTTCGAGTACTGTGACGTTGTGA 720
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 TCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAGACCCGTTCGAGTACTGTGACGTTGTGA 719
Query 721 CAACGTCAACTCACAAGAGCTTGAGAGGTCCAAGGGCTGGTATGATCTTTTATAGAAAGG 780
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAACCTCAACTCACAAGAGTTTGAGAGGTCCAAGGGCTGGTATGATCTTTTATAGAAAGG 779
Query 781 GACCAAAACCAGCCAAGAAGGGCCAACCCGAGGGTGAAGTCTACGATTTCGACGCAAAAA 840
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 780 GCCCAAAACCAGCCAAGAAGGGCCAACCCGAGGGTGAAGTCTACGATTTTGACAAAAAAA 839
Query 841 TCAACTCTGCGGTATTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTGGTGCTC 900
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCAACTTTGCGGTGTTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTGGTGCTC 899
Query 901 TAGCTGTTGCGTTGAAGCAGGTTATGGCTCCTAGCTTCAAAGTTTATGCAAAACAGGTGA 960
||||||||||||||||||||| |||||||||| | ||||| || || |||||||||||||
Sbjct 900 TAGCTGTTGCGTTGAAGCAGGCTATGGCTCCTGGGTTCAAGGTCTACGCAAAACAGGTGA 959
Query 961 AAGCTAATGCTGCTTGCCTTGCAAGCTACCTAATAA-ATAAGGGATATACTCTTGTAACC 1019
|||| |||||||||||||||| || ||||||||| | ||||||||| | ||||||||
Sbjct 960 AAGCCAATGCTGCTTGCCTTGGAAACTACCTAATGGGA-AAGGGATATTGTATTGTAACC 1018
Query 1020 GATGGAACTGATAACCACCTTATTCTTTGGGATCTTCGCCCTCTTGGATTGACCGGTAAC 1079
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGTGGAACTGATAACCACCTTGTTCTTTGGGATCTTCGCCCTCTTGGATTGACCGGTAAC 1078
Query 1080 AAGGTTGAGAAGGTTTGTGAATTGTGCTACATTACTTTGAACAGGAATGCGGTATTCGGA 1139
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1079 AAGGTTGAGAAGGTTAGTGAATTGGGCTACATTACTTTGAACAGGAATGCGGTATTCGGA 1138
Query 1140 GACACTAGTTTTCTTGCTCCCGGAGGTGTAAGAATCG 1176
|||||||||||||||||||| ||||||||||||||||
Sbjct 1139 GACACTAGTTTTCTTGCTCCTGGAGGTGTAAGAATCG 1175
> Ahg947030 jgi|Araly1|947030|scaffold_703259.1
Length=1456
Score = 1448 bits (784), Expect = 0.0
Identities = 1235/1451 (85%), Gaps = 37/1451 (3%)
Strand=Plus/Plus
Query 4 AGATGGAACCAGTCTATTCTTGGGGAAACA-C-GCATCTTGACTTCGTCGATCCGGAGAT 61
||||||||||||| | ||| |||||||||| | | || | || ||| ||||| |||||
Sbjct 19 AGATGGAACCAGTTTCTTCATGGGGAAACACCTCCCTCATCAC--CGTAGATCCAGAGAT 76
Query 62 CTACGACCTAATCGAGAAGGAGAAACATCGTCAATGTCGAGGAATCGAACTCATAGCAGC 121
| | |||||||||||||||||||||| ||| |||||||||||||||||||| || || |
Sbjct 77 CCATGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAGGAATCGAACTTATCGCCTC 136
Query 122 CGAGAATTTCACTTCCGTGGCCGTCATGGAAGCTCTCGGAAGTTGC-TTAACCAACAAAT 180
|||||||||||||||| | |||||||| |||||||||||||| ||| |||||||||||||
Sbjct 137 CGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAAG-TGCTTTAACCAACAAAT 195
Query 181 ACTCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATAG 240
|||| |||||||||||||||||||||||||| ||||||| ||| ||||||||| |||| |
Sbjct 196 ACTCTGAAGGTATGCCTGGTAATCGTTACTATGGAGGTAACGAATTCATCGATCAGATCG 255
Query 241 AGAGTCTCTGCCGCTCACGCTCTCTCGAAGCCTTCCATTGCAATCCAG-AGAAATGGGGC 299
||| ||| ||||| ||| | |||||||||| |||||||| |||||| || ||||||
Sbjct 256 AGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTGATCCAGCAG-CGTGGGGC 314
Query 300 GTTAACGTTCAGCCTTACTCTGGTTCCCCTGCGAATTTCGCAGCCTACACCGCCTTGCTC 359
||||| ||||||||||| ||||| || || ||||||||||| || ||||| || |||||
Sbjct 315 GTTAATGTTCAGCCTTATTCTGGATCTCCGGCGAATTTCGCTGCTTACACGGCTTTGCTT 374
Query 360 CAGCCTCATGATCGTATCATGGGGCTTGATTTGCCATCAGGTGGTCATATAACGCATGGT 419
|||||||| |||||||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 375 CAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTGGTCATTTGACTCATGGT 434
Query 420 TACTATAGC-TCTGGTGGGAAGAACATCTCCGCGACCTCGATCTACTTTGAAAACCTTCC 478
||||||| | |||||||| ||||| ||||| ||||| |||||||||||||| | |||||
Sbjct 435 TACTATA-CATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCTACTTTGAGAGTCTTCC 493
Query 479 CTACAAGGTGGATTCCAAGACTGGTTACATTGATTACGACAAACTTGAGGAGAAAGC-TA 537
|| |||||| ||| || |||||||||||||||||||| || ||||| ||||| || |
Sbjct 494 GTATAAGGTGAATTTCACCACTGGTTACATTGATTACGAGAAGCTTGAAGAGAAGGCGT- 552
Query 538 TGGATTTTAGGCCTAAGTTAATTATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATT 597
||||||||||||| ||||| |||||||||| || | | | || |||||||| |||||||
Sbjct 553 TGGATTTTAGGCCAAAGTTGCTTATCTGTGGTGGTAGTGCGTATCCTAGGGATTGGGATT 612
Query 598 ACGCGAGATTCAGGGCTGTCGCCGACAAGGTTGGAGCTTTTTTGCTCTGTGATATGGCTC 657
|||| ||||| || ||| | || || |||||||||||| ||||||| |||||||||||||
Sbjct 613 ACGCTAGATTGAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGCTTTGTGATATGGCTC 672
Query 658 ATAACAGTGCCCTCGTTGCTGCTCAGGAAGCCGCAGACCCGTTCGAGTACTGTGACGTTG 717
| | ||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 673 ACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCGTTTGAGTACTGTGACGTTG 732
Query 718 TGACAACGTCAACTCACAAGAGCTTGAGAGGTCCAAGGGCTGGTATGATCTTTTATAGAA 777
||||||| |||| |||||||| ||||| ||||||||||||||||||||||| || || |
Sbjct 733 TGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTATGATCTTCTACAGGA 792
Query 778 AGGGACCAAAACCAGCC-AAGAAGGGCCAACCCGAGGGTGAAGTCTACGA-TTTCGACGC 835
|||| ||||||||| || |||||||| ||||||||||||| |||||| || ||| || |
Sbjct 793 AGGGCCCAAAACCA-CCAAAGAAGGGTCAACCCGAGGGTGCAGTCTATGACTTT-GA-GG 849
Query 836 A-AAAATCAACTCTGCGGTATTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTG 894
| |||||||||| ||| |||||||||||||||||| |||||||||||||| || |||| |
Sbjct 850 ACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACAATCACCAGATCG 909
Query 895 GTGCTCTAGCTGTTGCGTTGAAGCAGG-TTATGGCTCCTAGCTTCAAAGTTTATGCAAAA 953
||||||||||||||||||||||||||| | || ||||| | ||||| || || ||||||
Sbjct 910 GTGCTCTAGCTGTTGCGTTGAAGCAGGCTAAT-ACTCCTGGGTTCAAGGTCTACGCAAAA 968
Query 954 CAGGTGAAAGCTAATGCTGCTTGC-CTTGCAAGCTACCTAATAAATAAGGGATATA-C-T 1010
||||||||||| ||||||| |||| |||| || ||||||||| | ||||| | || |
Sbjct 969 CAGGTGAAAGCCAATGCTG-TTGCACTTGGAAACTACCTAATGAGCAAGGG-T-TACCAG 1025
Query 1011 CTTGTAACCGATGGAACTGATAACCACCTTATTCTTTGGGATCTTCGCCCTCTTGGATTG 1070
|||| ||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1026 ATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGATTG 1085
Query 1071 ACCGGTAACAAGGTTGAGAAGGTTTGTGAAT-TGTGCTA-CATTACTTTGAACAGGAATG 1128
||||||||||||||||||||| | || || | ||||| | |||||||||||||| |||||
Sbjct 1086 ACCGGTAACAAGGTTGAGAAGCTCTGCGA-TCTGTGC-AGCATTACTTTGAACAAGAATG 1143
Query 1129 CGGTATTCGGAGACACTAGTTTTCTTGCTCCCGGAGGTGTAAGAATCGGTACACCGGCGA 1188
| ||||| ||||||| |||| ||||||||| ||||||||||||||||||||||| || |
Sbjct 1144 CAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTACACCCGCAA 1203
Query 1189 TGACATCGAGAGGATTGGTGGAGAAGGACTTTGAGAAGATAGGAGAGTTCCTGCA-CCGT 1247
|||| |||||||||||||||||||||||||||||| |||||||||| |||||| | ||||
Sbjct 1204 TGACTTCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTG-AGCCGT 1262
Query 1248 GCCGTGACAATCACGTTGGACATCCAGGAG-CAGTACGGTAAGGTGATGAAGGACTTCAA 1306
|| |||||| | || |||||||||||| || || ||||||||| || |||||||||||||
Sbjct 1263 GCAGTGACACTGACATTGGACATCCAGAAGACA-TACGGTAAGTTGTTGAAGGACTTCAA 1321
Query 1307 CAAGGGTTTGGTGAACAACAAGGAGATCGATGAGATAAAGGCTGACGTTGAGGAGTTCAC 1366
||||||||||||||||||||| || ||||| || | ||||||||||| ||| ||||| |
Sbjct 1322 CAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGACGTCGAGAAGTTCTC 1381
Query 1367 GTACGATTTTGATATGCCTGGATTTTTCATCTCTGAG-TCAAGGA-ACG-ATTAGAGATC 1423
| | | ||| ||||||||||| |||| |||||| | ||| | | | ||||||||||
Sbjct 1382 GGCCTCGTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGAGATC 1441
Query 1424 TCTCACTCTCT 1434
|||| ||||||
Sbjct 1442 TCTCTCTCTCT 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5