BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13930.1
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947030 jgi|Araly1|947030|scaffold_703259.1 2438 0.0
Ahg493523 jgi|Araly1|493523|fgenesh2_kg.7__2956__AT4G13890.1 1358 0.0
> Ahg947030 jgi|Araly1|947030|scaffold_703259.1
Length=1456
Score = 2438 bits (1320), Expect = 0.0
Identities = 1408/1451 (97%), Gaps = 3/1451 (0%)
Strand=Plus/Plus
Query 63 ccATTCAACAATCTACAAAGAAGATGGAACCAGTCTCTTCATGGGGTAACACCTCTCTCG 122
|||||||||||||| | ||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1 CCATTCAACAATCT-C--CGAAGATGGAACCAGTTTCTTCATGGGGAAACACCTCCCTCA 57
Query 123 TCTCCGTAGATCCAGAGATCCACGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAG 182
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 58 TCACCGTAGATCCAGAGATCCATGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAG 117
Query 183 GAATCGAACTTATCGCTTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAA 242
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAATCGAACTTATCGCCTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAA 177
Query 243 GTGCCTTAACCAACAAATACTCCGAAGGTATTCCTGGTAATCGTTATTACGGAGGTAACG 302
|||| ||||||||||||||||| |||||||| |||||||||||||| || ||||||||||
Sbjct 178 GTGCTTTAACCAACAAATACTCTGAAGGTATGCCTGGTAATCGTTACTATGGAGGTAACG 237
Query 303 AATTCATCGATGAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTG 362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AATTCATCGATCAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTG 297
Query 363 ATCCAGCAGCGTGGGGCGTTAATGTTCAGCCGTATTCTGGATCTCCGGCAAATTTCGCTG 422
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 298 ATCCAGCAGCGTGGGGCGTTAATGTTCAGCCTTATTCTGGATCTCCGGCGAATTTCGCTG 357
Query 423 CTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTG 417
Query 483 GTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCT 477
Query 543 ACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGATAAGC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 ACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGAGAAGC 537
Query 603 TTGAAGAGAAGGCGTTGGATTTCAGGCCTAAGTTGCTTATCTGTGGTGGTAGTGCGTATC 662
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 538 TTGAAGAGAAGGCGTTGGATTTTAGGCCAAAGTTGCTTATCTGTGGTGGTAGTGCGTATC 597
Query 663 CTAGGGATTGGGATTACGCTAGATTTAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGC 722
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 598 CTAGGGATTGGGATTACGCTAGATTGAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGC 657
Query 723 TTTGTGACATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCATTTG 782
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 TTTGTGATATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCGTTTG 717
Query 783 AGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTA 777
Query 843 TGATTTTCTACAGGAAGGGTCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCT 902
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGATCTTCTACAGGAAGGGCCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCT 837
Query 903 ATGATTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACA 962
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGACTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACA 897
Query 963 ATCACCAGATTGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGG 1022
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATCACCAGATCGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGG 957
Query 1023 TCTACGCAAAACAAGTGAAAGCCAATGCTGTTGCCCTTGGAAACTACCTAATGAGCAAGG 1082
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 958 TCTACGCAAAACAGGTGAAAGCCAATGCTGTTGCACTTGGAAACTACCTAATGAGCAAGG 1017
Query 1083 GTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTC 1077
Query 1143 TTGGATTGACCGGAAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACATTGAACA 1202
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1078 TTGGATTGACCGGTAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACTTTGAACA 1137
Query 1203 AGAACGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTGCAC 1262
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 AGAATGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTACAC 1197
Query 1263 CCGCGATGACATCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGA 1322
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCGCAATGACTTCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGA 1257
Query 1323 GCCGTGCAGTGACACTGACGTTGGACATCCAAAAGACATACGGTAAGTTGTTGAAGGACT 1382
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1258 GCCGTGCAGTGACACTGACATTGGACATCCAGAAGACATACGGTAAGTTGTTGAAGGACT 1317
Query 1383 TCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGATGTCGAGAAGT 1442
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1318 TCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGACGTCGAGAAGT 1377
Query 1443 TCTCGGCGTCTTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGA 1502
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TCTCGGCCTCGTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGA 1437
Query 1503 GATCTTTCTCT 1513
||||| |||||
Sbjct 1438 GATCTCTCTCT 1448
> Ahg493523 jgi|Araly1|493523|fgenesh2_kg.7__2956__AT4G13890.1
Length=1175
Score = 1358 bits (735), Expect = 0.0
Identities = 1037/1183 (88%), Gaps = 20/1183 (2%)
Strand=Plus/Plus
Query 84 AGATGGAACCAGTCTCTTCATGGGGTAACAC-CTCTCTCGTCTCCGTAGATCCAGAGATC 142
|||||||| |||||||||| ||||| ||||| | |||| |||||||| ||||| ||||||
Sbjct 3 AGATGGAATCAGTCTCTTCTTGGGGAAACACGC-CTCTTGTCTCCGTCGATCCCGAGATC 61
Query 143 CACGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAGGAATCGAACTTATCGCTTCC 202
||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||
Sbjct 62 CACGACCTAATCGAGAAGGAGAAACATCGGCAATGTCGAGGAATCGAACTCATAGCCGCC 121
Query 203 GAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAAGTGCCTTAACCAACAAATAC 262
||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 122 GAGAATTTCACTTCCTTGGCTGTCATGGAAGCTCTTGGAAGTGCCTTAACCAACAAATAC 181
Query 263 TCCGAAGGTATTCCTGGTAATCGTTATTACGGAGGTAACGAATTCATCGATGAGATCGAG 322
|| |||||||| |||||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 182 TCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATCGAG 241
Query 323 AATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTGATCCAGCAG-CGTGGGGCGT 381
| ||| ||||| ||| | |||||||| ||||||||||||||||||| || ||||||||
Sbjct 242 AGTCTCTGCCGCTCACGCGCTCTCGAGGCTTTCCATTGTGATCCAG-AGAAATGGGGCGT 300
Query 382 TAATGTTCAGCCGTATTCTGGATCTCCGGCAAATTTCGCTGCTTACACGGCTTTGCTTCA 441
|||||||||||| || ||||| ||||| ||||| ||||| || |||||||| ||||| ||
Sbjct 301 TAATGTTCAGCCTTACTCTGGTTCTCCTGCAAACTTCGCCGCCTACACGGCCTTGCTCCA 360
Query 442 GCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTGGTCATTTGACTCATGGTTA 501
|||||| |||||||||||| |||||||| ||||||||||||||||| | || ||||||||
Sbjct 361 GCCTCATGATCGTATCATGAGGCTTGATCTGCCTTCAGGTGGTCATCTAACGCATGGTTA 420
Query 502 CTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCTACTTTGAGAGTCTTCCGTA 561
|||||| |||||||| ||||| || || ||||| ||||||||||| || | |||| |||
Sbjct 421 CTATACCTCTGGTGGGAAGAATATATCCGCGACCTCGATCTACTTCGAAAACCTTCTGTA 480
Query 562 TAAGGTGAATTTCACCACTGGTTACATTGATTACGATAAGCTTGAAGAGAAGGCGTTGGA 621
|||||| ||| |||||||||||||||||||||||| |||||||| ||||| || ||||
Sbjct 481 CAAGGTGGATTCCACCACTGGTTACATTGATTACGACAAGCTTGAGGAGAAAGCAATGGA 540
Query 622 TTTCAGGCCTAAGTTGCTTATCTGTGGTGGTAGTGCGTATCCTAGGGATTGGGATTACGC 681
||| ||||||||||| | |||||||| || | | | || |||||||| |||||||||||
Sbjct 541 TTTTAGGCCTAAGTTAATCATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATTACGC 600
Query 682 TAGATTTAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGCTTTGTGACATGGCTCACAT 741
|| || | || | | || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 GAGGTTCAAAGTTGTCGCGGATAAGGTTGGAGCTCTTTTGCTTTGTGATATGGCTCACAT 660
Query 742 CAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCATTTGAGTACTGTGACGTTGTGAC 801
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 661 CAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAGACCCGTTCGAGTACTGTGACGTTGTGAC 720
Query 802 AACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTATGAT-TTTCTACAGGAAGG 860
|||| |||| |||||||||||||| |||||||||||||||||||| ||| || || ||||
Sbjct 721 AACCTCAACTCACAAGAGTTTGAGAGGTCCAAGGGCTGGTATGATCTTT-TATAGAAAGG 779
Query 861 GTCCAAAACCA-CCAAAGAAGGGTCAACCCGAGGGTGCAGTCTATGATTTTGAGGACAAA 919
| ||||||||| |||| |||||| ||||||||||||| |||||| |||||||| | |||
Sbjct 780 GCCCAAAACCAGCCAA-GAAGGGCCAACCCGAGGGTGAAGTCTACGATTTTGACAAAAAA 838
Query 920 ATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACAATCACCAGATTGGTGCT 979
||||||||||| || ||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 839 ATCAACTTTGCGGTGTTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTGGTGCT 898
Query 980 CTAGCTGTTGCGTTGAAGCAGGCTAATA-CTCCTGGGTTCAAGGTCTACGCAAAACAAGT 1038
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 899 CTAGCTGTTGCGTTGAAGCAGGCTA-TGGCTCCTGGGTTCAAGGTCTACGCAAAACAGGT 957
Query 1039 GAAAGCCAATGCTG-TTGCCCTTGGAAACTACCTAATGAGCAAGGGTTACCAG-ATTGTG 1096
|||||||||||||| ||||| ||||||||||||||||| | ||||| || | |||||
Sbjct 958 GAAAGCCAATGCTGCTTGCC-TTGGAAACTACCTAATGGGAAAGGGATATT-GTATTGTA 1015
Query 1097 ACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGATTGACCGGA 1156
||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1016 ACCGGTGGAACTGATAACCACCTTGTTCTTTGGGATCTTCGCCCTCTTGGATTGACCGGT 1075
Query 1157 AACAAGGTTGAGAAGCTCT-GCGA-TCTGTGC-AGCATTACATTGAACAAGAACGCAGTA 1213
||||||||||||||| | | | || | || || | |||||| ||||||| ||| || |||
Sbjct 1076 AACAAGGTTGAGAAGGT-TAGTGAAT-TGGGCTA-CATTACTTTGAACAGGAATGCGGTA 1132
Query 1214 TTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCG 1256
|| ||||||| |||| ||||||||||||||||||||||||||
Sbjct 1133 TTCGGAGACACTAGTTTTCTTGCTCCTGGAGGTGTAAGAATCG 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5