BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13940.1
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947029 jgi|Araly1|947029|scaffold_703258.1 2442 0.0
Ahg479893 jgi|Araly1|479893|fgenesh2_kg.3__2594__AT3G23810.1 1633 0.0
> Ahg947029 jgi|Araly1|947029|scaffold_703258.1
Length=1498
Score = 2442 bits (1322), Expect = 0.0
Identities = 1443/1502 (96%), Gaps = 5/1502 (0%)
Strand=Plus/Plus
Query 47 CAAATCTCAGATCTAGCTCAACCATGGCGTTGCTCGTCGAGAAGACCTCAAGTGGCCGTG 106
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAATCTCAGATCTAG---AAAAATGGCGTTGCTCGTCGAGAAGACCTCAAGTGGCCGTG 57
Query 107 AATACAAGGTCAAAGACATGTCTCAAGCCGATTTCGGTCGTCTCGAACTCGAGCTCGCCG 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AATACAAGGTCAAAGACATGTCTCAAGCCGATTTCGGTCGTCTCGAACTCGAGCTCGCCG 117
Query 167 AAGTTGAGATGCCTGGACTCATGGCTTGTCGTACCGAATTCGGACCTTCTCAGCCATTCA 226
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 118 AAGTTGAGATGCCTGGACTCATGGCTTGTCGTACCGAGTTCGGACCTTCTCAACCATTCA 177
Query 227 AAGGCGCTAGAATCACCGGATCTCTTCACATGACCATCCAAACCGCCGTACTCATCGAAA 286
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 AAGGCGCTAGAATCACCGGATCTCTTCACATGACGATCCAAACCGCCGTACTCATCGAAA 237
Query 287 CCCTAACTGCTCTCGGTGCTGAAGTCAGATGGTGTTCCTGCAACATCTTTTCCACTCAAG 346
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 238 CCCTAACTGCTCTCGGTGCTGAAGTCAGATGGTGTTCCTGCAACATCTTCTCTACTCAAG 297
Query 347 ACCACGCCGCCGCAGCCATCGCTCGTGACTCCGCCGCTGTTTTCGCCTGGAAAGGTGAGA 406
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACCACGCCGCCGCCGCAATCGCTCGTGACTCCGCCGCTGTTTTCGCCTGGAAAGGTGAGA 357
Query 407 CTCTTCAGGAGTACTGGTGGTGTACCGAGCGTGCTCTAGATTGGGGTCCAGGTGGTGGTC 466
| ||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 358 CGCTTCAGGAGTATTGGTGGTGTACGGAACGTGCTCTTGATTGGGGTCCAGGTGGTGGTC 417
Query 467 CTGATCTGATTGTTGATGATGGTGGTGACGCTACTCTTTTGATTCATGAGGGTGTTAAAG 526
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 418 CTGATCTGATTGTTGATGATGGTGGTGATGCTACGCTTTTGATCCATGAGGGTGTTAAAG 477
Query 527 CTGAGGAGATCTTTGAGAAGACTGGTCAAGTTCCTGATCCTACTTCTACTGATAACCCTG 586
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTGAAGAGATTTTTGAGAAGACTGGTCAAGTTCCTGATCCTACTTCTACTGATAACCCTG 537
Query 587 AGTTTCAGATCGTGTTGTCTATTATCAAGGAAGGTCTTCAAGTTGATCCTAAGAAGTACC 646
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 538 AGTTTCAGATCGTGTTGTCTATTATCAAGGAAGGTCTTCAGGTTGATCCTAAGAAGTACC 597
Query 647 ACAAGATGAAGGAGAGACTTGTTGGTGTCTCTGAGGAAACTACCACTGGTGTTAAGAGGC 706
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 ATAAGATGAAGGAGAGACTTGTTGGTGTCTCTGAGGAAACTACTACTGGTGTTAAGAGGC 657
Query 707 TTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTG 766
|||| ||||||||| ||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 658 TTTATCAGATGCAGGAAAATGGAACTCTCTTGTTCCCTGCCATTAACGTCAATGACTCTG 717
Query 767 TCACCAAGAGCAAGTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCA 826
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 718 TCACCAAGAGCAAGTTCGACAATTTGTATGGTTGCCGTCACTCACTTCCTGATGGTCTCA 777
Query 827 TGAGGGCCACTGATGTCATGATCGCTGGAAAGGTTGCTGTTATCTGTGGATATGGTGATG 886
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGAGGGCCACTGATGTTATGATCGCTGGAAAGGTTGCTGTTATCTGTGGATATGGTGATG 837
Query 887 TTGGAAAGGGTTGTGCTGCTGCCATGAAGACTGCTGGTGCTAGAGTCATTGTGACTGAGA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTGGAAAGGGTTGTGCTGCTGCCATGAAGACTGCTGGTGCTAGAGTCATTGTGACTGAGA 897
Query 947 TTGATCCCATCTGTGCCCTTCAAGCTTTGATGGAAGGACTTCAGGTTCTTACCCTTGAGG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTGATCCCATCTGTGCCCTTCAAGCTTTGATGGAAGGACTTCAGGTTCTTACCCTTGAGG 957
Query 1007 ATGTTGTCTCAGAAGCTGATATCTTTGTCACCACCACCGGTAACAAAGACATCATCATGG 1066
|||||||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||
Sbjct 958 ATGTTGTCTCTGAAGCTGATATCTTTGTGACCACTACTGGTAACAAAGATATCATCATGG 1017
Query 1067 TCGACCACATGAGGAAGATGAAGAACAACGCTATTGTGTGCAACATTGGTCACTTTGACA 1126
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1018 TTGACCACATGAGGAAGATGAAGAACAATGCTATTGTGTGCAACATTGGTCACTTTGACA 1077
Query 1127 ATGAGATTGACATGCTTGGACTTGAGACTTACCCTGGTGTGAAGCGTATCACCATCAAGC 1186
| ||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1078 ACGAGATCGACATGCTCGGATTTGAGACTTACCCTGGTGTTAAGCGTATCACCATCAAGC 1137
Query 1187 CACAGACTGACAGGTGGGTGTTCCCAGAGACCAAGGCTGGAATCATTGTCTTGGCTGAGG 1246
| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 1138 CCCAGACTGACAGGTGGGTGTTCCCAGAGACAAAGACCGGAATCATTGTCTTGGCTGAGG 1197
Query 1247 GTCGTCTGATGAACTTGGGTTGTGCCACTGGTCACCCAAGTTTCGTGATGTCTTGCTCTT 1306
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTCGTCTCATGAACTTGGGTTGTGCCACTGGTCACCCAAGTTTCGTGATGTCTTGCTCTT 1257
Query 1307 TCACCAACCAGGTGATTGCCCAGCTCGAGCTCTGGAACGAGAAAG-CAAGCGGAAAGTAC 1365
||||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||||
Sbjct 1258 TCACCAACCAGGTGATTGCCCAGCTTGAGCTCTGGAACGAGAA-GTCAAGCGGTAAGTAC 1316
Query 1366 GAGAAGAAGGTGTACGTTCTTCCCAAGCATTTGGATGAGAAGGTTGCATTACTTCACTTG 1425
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1317 GAGAAGAAGGTGTACGTTCTTCCCAAGCATTTGGATGAGAAGGTTGCAGCACTTCACTTG 1376
Query 1426 GGCAAGCTTGGAGCCAGGCTTACAAAGCTGTCAAAGGACCAATCTGACTACGTCAGCATT 1485
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1377 GGCAAGCTTGGAGCCAGGCTTACTAAGCTGTCAAAGGACCAATCTGACTACATCAGCATT 1436
Query 1486 CCAATTGAGGGACCATACAAGCCTCCTCACTACAGGTACTgagagagagagagagTCGAC 1545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1437 CCAATTGAGGGACCATACAAGCCTCCTCACTACAGGTACTGAGAGAGAGAGAGAGTGGAC 1496
Query 1546 AA 1547
||
Sbjct 1497 AA 1498
> Ahg479893 jgi|Araly1|479893|fgenesh2_kg.3__2594__AT3G23810.1
Length=1712
Score = 1633 bits (884), Expect = 0.0
Identities = 1282/1475 (87%), Gaps = 23/1475 (2%)
Strand=Plus/Plus
Query 70 ATGGCGTTGCTCGTCGAGAAGACCTCAAGTGGCCGTGAATACAAGGTCAAAGACATGTCT 129
||||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 43 ATGGCTTTGCTTGTTGAGAAAACATCAAGTGGCCGTGAATACAAGGTCAAAGACATGTCT 102
Query 130 CAAGCCGATTTCGGTCGTCTCGAACTCGAGCTCGCCGAAGTTGAGATGCCTGGACTCATG 189
|| ||||| ||||| || |||||| ||||||| |||||||| || ||||||||||| |
Sbjct 103 CAGGCCGACTTCGGCCGGCTCGAAATCGAGCTAGCCGAAGTCGAAATGCCTGGACTTGTC 162
Query 190 GCTTGTCGTACCGAATTCGGACCTTCTCAGCCATTCAAAGGCGCTAGAATCACCGGATCT 249
|||| ||||| ||||||||||| ||||||||| | ||||| || ||||||||||||||
Sbjct 163 TCTTGCCGTACTGAATTCGGACCATCTCAGCCACTAAAAGGAGCAAGAATCACCGGATCA 222
Query 250 CTTCACATGACCATCCAAACCGCCGTACTCATCGAAACCCTAACTGCTCTCGGTGCTGAA 309
|| |||||||| || |||||||| || | |||||||| |||| |||||||| ||||||
Sbjct 223 CTCCACATGACGATTCAAACCGCTGTTTTGATCGAAACGTTAACCGCTCTCGGCGCTGAA 282
Query 310 GTCAGATGGTGTTCCTGCAACATCTTTTCCACTCAAGACCACGCCGCCGCAGCCATCGCT 369
|||||||||||||| ||||||||||| || |||||||| |||||||| ||||| || |||
Sbjct 283 GTCAGATGGTGTTCTTGCAACATCTTCTCAACTCAAGATCACGCCGCGGCAGCGATTGCT 342
Query 370 CGTGACTCCGCCGCTGTTTTCGCCTGGAAAGGTGAGACTCTTCAGGAGTACTGGTGGTGT 429
||||| |||||||| || ||||| |||||||||||||||||||| || || |||||||||
Sbjct 343 CGTGATTCCGCCGCGGTGTTCGCTTGGAAAGGTGAGACTCTTCAAGAATATTGGTGGTGT 402
Query 430 ACCGAGCGTGCTCTAGATTGGGGTCCAGGTGGTGGTCCTGATCTGATTGTTGATGATGGT 489
|| ||| | ||||| ||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 403 ACGGAGAGAGCTCTTGATTGGGGTCCTGGTGGTGGTCCTGATCTTATCGTTGATGACGGT 462
Query 490 GGTGACGCTACTCTTTTGATTCATGAGGGTGTTAAAGCTGAGGAGATCTTTGAGAAGACT 549
||||| ||||| || ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 463 GGTGATGCTACGCTGTTGATCCATGAGGGTGTTAAAGCTGAAGAGATCTTTGAGAAGACT 522
Query 550 GGTCAAGTTCC-TGATCCTACTTCTACTGATAA-CCCTGAGTTTCAGATCGTGTTGTCTA 607
||| | ||||| ||| || || ||||| ||||| ||| |||||||||||||||||| | |
Sbjct 523 GGT-ACGTTCCCTGACCCGACGTCTACGGATAATCCC-GAGTTTCAGATCGTGTTGGCGA 580
Query 608 TTATCA-AGGAAGGTCTTCAAGTTGATCCTAAGAAGTACCACAAGATGAAGGAGAGACTT 666
|||||| || | ||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 581 TTATCAGAG-ACGGTCTTCAAGTTGATCCCAAGAAGTACCATAAGATGAAGGAGAGA-TT 638
Query 667 G-TTGGTGTCTCTGAGGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAA 725
| ||||||| ||||| || |||||||||||||||||||||||||| ||||||||| | |
Sbjct 639 GGTTGGTGTTTCTGAAGAGACTACCACTGGTGTTAAGAGGCTTTATCAGATGCAGGAGAC 698
Query 726 TGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGTTCGA 785
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 699 TGGAACTCTCTTGTTCCCTGCCATTAACGTCAATGACTCTGTCACCAAGAGCAAGTTTGA 758
Query 786 CAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGGGCCACTGATGTCAT 845
||||||||| || ||||| ||||| || |||||||||||||||||||| |||||||| ||
Sbjct 759 CAACTTGTACGGATGCCGACACTCGCTACCTGATGGTCTCATGAGGGCTACTGATGTTAT 818
Query 846 GATCGCTGGAAAGGTTGCTGTTATCTGTGGATATGGTGATGTTGGAAAGGGTTGTGCTGC 905
||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 819 GATTGCTGGAAAGGTTGCTGTTATCTGTGGTTATGGTGATGTAGGAAAAGGTTGTGCTGC 878
Query 906 TGCCATGAAGACTGCTGGTGCTAGAGTCATTGTGACTGAGATTGATCCCATCTGTGCCCT 965
|| ||||| || || |||||| | ||||| ||||||||||||||||| |||||||| ||
Sbjct 879 AGCAATGAAAACCGCGGGTGCTCGTGTCATAGTGACTGAGATTGATCCAATCTGTGCTCT 938
Query 966 TCAAGCT-TTGATGGAAGGACTTCAGGTTCTTACCCTTGAGGATGTTGTCTC-AGAAGCT 1023
||| ||| || |||||||| ||||| ||||| || |||||||||||| | || |||||||
Sbjct 939 TCAGGCTCTT-ATGGAAGGTCTTCAAGTTCTAACTCTTGAGGATGTTCT-TCCAGAAGCT 996
Query 1024 GATATCTTTGTCACCACCACCGGTAACAAAGACATCATCATGGTCGACCACATGAGGAAG 1083
||||||||||| ||||| || ||||||||||| ||||||||||| |||||||||||||||
Sbjct 997 GATATCTTTGTGACCACTACTGGTAACAAAGATATCATCATGGTTGACCACATGAGGAAG 1056
Query 1084 ATGAAGAACAACGCTATTGTGTGCAACATTGGTCACTTTGACAATGAGATTGACATGCTT 1143
||||||||||| || ||||| || ||||||||||| |||||||| || || |||||||||
Sbjct 1057 ATGAAGAACAATGCCATTGTCTGTAACATTGGTCATTTTGACAACGAAATCGACATGCTT 1116
Query 1144 GGACTTGAGACTTACCCTGGTGTGAAGCGTATCACCATCAAGCCACAGACTGACAGGTGG 1203
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1117 GGACTTGAGACTTACCCTGGTGTGAAACGTATCACCATCAAGCCACAGACCGATAGGTGG 1176
Query 1204 GTGTTCCCAGAGACCAAGGCTGGAATCATTGT-CTTGGCTGAGGGTCGTCTGATGAACTT 1262
||||| ||||| |||||| |||| |||||||| || | |||| |||||| ||||||||||
Sbjct 1177 GTGTTTCCAGACACCAAGTCTGGTATCATTGTTCTAG-CTGAAGGTCGTTTGATGAACTT 1235
Query 1263 GGGTTGTGCCACTGGTCACCCAAGTTTCGTGATGTCTTGCTCTTTCACCAACCAGGTGAT 1322
||| || || ||||| ||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1236 GGGATGCGCTACTGGACACCCGAGTTTCGTGATGTCGTGCTCATTCACCAACCAGGTGAT 1295
Query 1323 TGCCCAGCTCGAGCTCTGGAACGAGAAAG-CAAGCGGAAAGTACGAGAAGAAGGTGTACG 1381
||| ||||| ||||||||||||||||| | | ||||| ||||| |||||||||||||| |
Sbjct 1296 TGCACAGCTTGAGCTCTGGAACGAGAA-GTCGAGCGGGAAGTATGAGAAGAAGGTGTATG 1354
Query 1382 TTCTTCCC-AAGCATTTGGATGAGAAGGTTGCATT-ACTTCACTTGGGCAAGCTTGGAGC 1439
|| || || || || |||||||||||||| || | ||||||||| || ||||| || ||
Sbjct 1355 TT-TTGCCTAAACACTTGGATGAGAAGGTAGC-TGCACTTCACTTAGGTAAGCTCGGTGC 1412
Query 1440 CAGGCTTACAAAGCTGT-CAAAGGACCAATCTGACTACGTCAGCATTCCAATTGAGGGAC 1498
|| || || ||||| | | ||||||||||||||||| |||||||| || ||||| || |
Sbjct 1413 AAGACTCACCAAGCT-TACCAAGGACCAATCTGACTATGTCAGCATACCTATTGAAGGTC 1471
Query 1499 CATACAAGCCTCCTCACTACAGGTACTgagagaga 1533
| ||||||||| ||| |||||||||||||| |||
Sbjct 1472 CCTACAAGCCTGTTCATTACAGGTACTGAGA-AGA 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74809241180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5