BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13950.1 Length=604 Score E Sequences producing significant alignments: (Bits) Value Ahg493518 jgi|Araly1|493518|fgenesh2_kg.7__2951__AT4G13950.1 660 0.0 Ahg930431 jgi|Araly1|930431|scaffold_302888.1 226 2e-58 > Ahg493518 jgi|Araly1|493518|fgenesh2_kg.7__2951__AT4G13950.1 Length=514 Score = 660 bits (357), Expect = 0.0 Identities = 430/464 (93%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 1 TTCTGCTTAGAGACAGAGAAATAGAGAGAGATCGCGTCGGCACAATCTGCAA-TTTCCAA 59 |||| ||||||||| ||| | | |||||||||||||||||||||||||||| ||||||| Sbjct 1 TTCTACTTAGAGAC--AGACA-A-AGAGAGATCGCGTCGGCACAATCTGCAATTTTCCAA 56 Query 60 CATCGACATGTTTAACTCTACAGCGTTGGTGATTTTCGCCATTCTTTTCCTCTTAATCTC 119 |||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| Sbjct 57 CATCGACATGTTTAACTCTATAGCGTTGGTAATTTTCGCCATTCTTTTCCTCTCAATCT- 115 Query 120 CGCCGATGCGTTCCCGATTCCGTCTCCCAACGGAGAGATCGACGCAATGTTGA-TCCGAA 178 || | ||||||||||||||||| || ||||||||||||||||||||||| | |||||| Sbjct 116 --CCAACGCGTTCCCGATTCCGTCGCCGAACGGAGAGATCGACGCAATGTT-AGTCCGAA 172 Query 179 ACAGTATCATCGGAGAAGATGAAGATCTAATGCCAACTGAGATCAGCCGGAGAGTACTGA 238 |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 173 ACAGCCTCATCGGAGAAGATGAAGATCTAATGCCAACCGAGATCAGCCGGAGAGTACTGA 232 Query 239 TGGCGCAGAAACGGTACATCGGCTACGAAACGCTAAGGAGAGACATGGTTCCTTGTCAGA 298 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 233 TGGCGCAGAAGCGGTACATCGGCTACGAAACCCTAAGGAGAGACATGGTTCCTTGTCAGA 292 Query 299 AACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAATTCTTACAGCAGAGGCT 358 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 293 AACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAATTCTTACAACAGAGGCT 352 Query 359 GTGACACCATTACCAGATGCGCTAGAGACACAAACGACATCAACACATGAAGGTAAGATC 418 | || |||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||| Sbjct 353 GCGAGACCATTACAAGATGTGCTAGAGACACAAGCGATATCAACACATGAAGGTAAGATC 412 Query 419 CAAGAAATTGCCAAAATTGGAAGCTTTTTGGCCGAGGCAAGTAA 462 ||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 413 CAAGAAATTGCCAAAATTGGAAGTTTTTTAGCAGAGGCAAGTAA 456 > Ahg930431 jgi|Araly1|930431|scaffold_302888.1 Length=397 Score = 226 bits (122), Expect = 2e-58 Identities = 248/308 (81%), Gaps = 11/308 (4%) Strand=Plus/Plus Query 109 CTCTTAATCTCCGCCGATGCGTTCCCGATTCCGTCTCCCAACGGAGAGATCGACGCAATG 168 |||| |||||||| | | | ||| ||||||||||| |||||||| |||||||||||| Sbjct 75 CTCTCAATCTCCGTC-ACG-GTT-CCGATTCCGTCGGTGAACGGAGAAATCGACGCAATG 131 Query 169 TTGATCCGAAACAGTATCATC--GG-AGAAG-ATGA-A-GATCTAATGCCAACTGAGATC 222 ||| ||| ||| | | ||| || ||||| | || | || | ||||| | ||||| Sbjct 132 CTGAACCGGAACGGCGTAATCGGGGAAGAAGAAGGAGAGGAGATGATGCCGTCGGAGATA 191 Query 223 AGCCGGAGAGTACTGATGGCGCAGAAACGGTACATCGGCTACGAAACGCTAAGGAGAGAC 282 |||||||||||| ||||| || |||||| ||||| |||| ||||| ||||||||||| Sbjct 192 AGCCGGAGAGTAATGATGATGCGGAAACGATACATAAGCTATGAAACTTTAAGGAGAGAC 251 Query 283 ATGGTTCCTTGTCAGAAACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAAT 342 ||||||||||||||||||||||| |||||||| |||| |||||||||||| || |||||| Sbjct 252 ATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTGGTCAGGCTAAT 311 Query 343 TCTTACAGCAGAGGCTGT-GACACCATTACCAGATGCGCTAGAGACACAAACGACATCAA 401 |||||| |||||| ||| | | |||||| || || ||||||||||| ||||||||||| Sbjct 312 GCTTACAACAGAGGATGTAG-CGTCATTACTAGGTGTGCTAGAGACACTAACGACATCAA 370 Query 402 CACATGAA 409 || |||| Sbjct 371 GACTTGAA 378 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22073168943 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5