BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13950.1
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493518 jgi|Araly1|493518|fgenesh2_kg.7__2951__AT4G13950.1 660 0.0
Ahg930431 jgi|Araly1|930431|scaffold_302888.1 226 2e-58
> Ahg493518 jgi|Araly1|493518|fgenesh2_kg.7__2951__AT4G13950.1
Length=514
Score = 660 bits (357), Expect = 0.0
Identities = 430/464 (93%), Gaps = 10/464 (2%)
Strand=Plus/Plus
Query 1 TTCTGCTTAGAGACAGAGAAATAGAGAGAGATCGCGTCGGCACAATCTGCAA-TTTCCAA 59
|||| ||||||||| ||| | | |||||||||||||||||||||||||||| |||||||
Sbjct 1 TTCTACTTAGAGAC--AGACA-A-AGAGAGATCGCGTCGGCACAATCTGCAATTTTCCAA 56
Query 60 CATCGACATGTTTAACTCTACAGCGTTGGTGATTTTCGCCATTCTTTTCCTCTTAATCTC 119
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 57 CATCGACATGTTTAACTCTATAGCGTTGGTAATTTTCGCCATTCTTTTCCTCTCAATCT- 115
Query 120 CGCCGATGCGTTCCCGATTCCGTCTCCCAACGGAGAGATCGACGCAATGTTGA-TCCGAA 178
|| | ||||||||||||||||| || ||||||||||||||||||||||| | ||||||
Sbjct 116 --CCAACGCGTTCCCGATTCCGTCGCCGAACGGAGAGATCGACGCAATGTT-AGTCCGAA 172
Query 179 ACAGTATCATCGGAGAAGATGAAGATCTAATGCCAACTGAGATCAGCCGGAGAGTACTGA 238
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 173 ACAGCCTCATCGGAGAAGATGAAGATCTAATGCCAACCGAGATCAGCCGGAGAGTACTGA 232
Query 239 TGGCGCAGAAACGGTACATCGGCTACGAAACGCTAAGGAGAGACATGGTTCCTTGTCAGA 298
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 233 TGGCGCAGAAGCGGTACATCGGCTACGAAACCCTAAGGAGAGACATGGTTCCTTGTCAGA 292
Query 299 AACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAATTCTTACAGCAGAGGCT 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 293 AACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAATTCTTACAACAGAGGCT 352
Query 359 GTGACACCATTACCAGATGCGCTAGAGACACAAACGACATCAACACATGAAGGTAAGATC 418
| || |||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 353 GCGAGACCATTACAAGATGTGCTAGAGACACAAGCGATATCAACACATGAAGGTAAGATC 412
Query 419 CAAGAAATTGCCAAAATTGGAAGCTTTTTGGCCGAGGCAAGTAA 462
||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 413 CAAGAAATTGCCAAAATTGGAAGTTTTTTAGCAGAGGCAAGTAA 456
> Ahg930431 jgi|Araly1|930431|scaffold_302888.1
Length=397
Score = 226 bits (122), Expect = 2e-58
Identities = 248/308 (81%), Gaps = 11/308 (4%)
Strand=Plus/Plus
Query 109 CTCTTAATCTCCGCCGATGCGTTCCCGATTCCGTCTCCCAACGGAGAGATCGACGCAATG 168
|||| |||||||| | | | ||| ||||||||||| |||||||| ||||||||||||
Sbjct 75 CTCTCAATCTCCGTC-ACG-GTT-CCGATTCCGTCGGTGAACGGAGAAATCGACGCAATG 131
Query 169 TTGATCCGAAACAGTATCATC--GG-AGAAG-ATGA-A-GATCTAATGCCAACTGAGATC 222
||| ||| ||| | | ||| || ||||| | || | || | ||||| | |||||
Sbjct 132 CTGAACCGGAACGGCGTAATCGGGGAAGAAGAAGGAGAGGAGATGATGCCGTCGGAGATA 191
Query 223 AGCCGGAGAGTACTGATGGCGCAGAAACGGTACATCGGCTACGAAACGCTAAGGAGAGAC 282
|||||||||||| ||||| || |||||| ||||| |||| ||||| |||||||||||
Sbjct 192 AGCCGGAGAGTAATGATGATGCGGAAACGATACATAAGCTATGAAACTTTAAGGAGAGAC 251
Query 283 ATGGTTCCTTGTCAGAAACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAAT 342
||||||||||||||||||||||| |||||||| |||| |||||||||||| || ||||||
Sbjct 252 ATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTGGTCAGGCTAAT 311
Query 343 TCTTACAGCAGAGGCTGT-GACACCATTACCAGATGCGCTAGAGACACAAACGACATCAA 401
|||||| |||||| ||| | | |||||| || || ||||||||||| |||||||||||
Sbjct 312 GCTTACAACAGAGGATGTAG-CGTCATTACTAGGTGTGCTAGAGACACTAACGACATCAA 370
Query 402 CACATGAA 409
|| ||||
Sbjct 371 GACTTGAA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22073168943
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5