BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13955.1
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890976 jgi|Araly1|890976|Al_scaffold_0007_2962 412 5e-115
> Ahg890976 jgi|Araly1|890976|Al_scaffold_0007_2962
Length=282
Score = 412 bits (223), Expect = 5e-115
Identities = 265/285 (93%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 1 ATGGCCACTCAGAAGTTTTCATATTTTCTCTTAGTTTTGTTGATGGTGTTTGCTCTCATC 60
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCCATTCAGAAGTTTTCATATTTTCTCTTACTTTTGTTGATGGTGTTTGCTCTCATC 60
Query 61 CTTCCATCAATAATTTCAGTCGAAGTCATACCCTGTATAGCGGGATCAAAATGTACAAAC 120
|||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 61 CTTCCATCCATAATTTCAGTCGAAGTCATACCGTGTATACCGGGATCAAAATGTACAAAC 120
Query 121 GATATGACATACAACGAACTTTGTAGATTTAAAGGATTCAGCAAAGGAGGGTTTTGTCAA 180
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GATATGACATGCAACGAACTTTGTAGATTTAAAGGATTCAACAAAGGAGGGTTTTGTCAA 180
Query 181 AAATATGTTCACCAAACGATCGGTCGGTGTTGCTGCCATCCTACAGGTTTGGAATCTCAA 240
|||||||||||| |||| | ||| | ||||||||||||||| ||||| |||||||||
Sbjct 181 AAATATGTTCACAAAACAACCGGCCAATGTTGCTGCCATCCT---GGTTTCGAATCTCAA 237
Query 241 GAGTCTTCCATATCCGGTGATACCAATGTAGTCATTACTAATTAA 285
|||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 238 GAGTATTCCACAACCGGTGATACCAATGTAGTCATTACTAATTAA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9958608729
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5